Merge branch 'master' into 4487-and-4558
[arvados.git] / crunch_scripts /
drwxr-xr-x   ..
-rwxr-xr-x 2031 GATK2-VariantFiltration
-rwxr-xr-x 2836 GATK2-bqsr
-rwxr-xr-x 7379 GATK2-merge-call
-rwxr-xr-x 5216 GATK2-realign
-rwxr-xr-x 5699 arvados-bcbio-nextgen.py
-rw-r--r-- 3744 arvados_bwa.py
-rw-r--r-- 1643 arvados_gatk2.py
-rw-r--r-- 1504 arvados_ipc.py
-rw-r--r-- 1372 arvados_picard.py
-rw-r--r-- 3664 arvados_samtools.py
-rwxr-xr-x 3935 bwa-aln
-rwxr-xr-x 1197 bwa-index
-rwxr-xr-x 1202 collection-merge
drwxr-xr-x - crunchutil
-rwxr-xr-x 1764 decompress-all.py
-rwxr-xr-x 420 file-select
-rwxr-xr-x 655 grep
-rwxr-xr-x 1012 hash
-rwxr-xr-x 4763 pgp-survey-import
-rwxr-xr-x 530 pgp-survey-parse
-rwxr-xr-x 6761 picard-gatk2-prep
-rw-r--r-- 2427 pyrtg.py
-rwxr-xr-x 733 rtg-fasta2sdf
-rwxr-xr-x 1434 rtg-fastq2sdf
-rwxr-xr-x 1155 rtg-map
-rwxr-xr-x 988 rtg-snp
-rwxr-xr-x 15986 run-command
-rwxr-xr-x 4615 split-fastq.py