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arvados.git
2014-07-08 Brett Smith3078: arv-put always writes progress before starting... commit | commitdiff | tree | snapshot
2014-07-08 Peter Amstutzmissing paren typo in arvados-bcbio-nextgen.py. refs... commit | commitdiff | tree | snapshot
2014-07-08 Peter Amstutzbc-bio script links gemini reference data. refs #2991 commit | commitdiff | tree | snapshot
2014-07-08 Brett Smith3204: Remove redundant pull-right from Workbench Collec... commit | commitdiff | tree | snapshot
2014-07-08 radhikarefs #3140 commit | commitdiff | tree | snapshot
2014-07-08 radhika3140: revert multiple content tabs work commit | commitdiff | tree | snapshot
2014-07-07 Peter Amstutzadd 'import sys' to arvados-bcbio-nextgen. no issue # commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzDon't use "arv" command wrapper, call arv-get/arv-put... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzUpdate arvados-cli dependency to correct deployed versi... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzMerge branch '3123-pipeline-report-job-submit-errors... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzGoogle API client jsonifies the body, so we don't have to. commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzUpdate package version dependencies on arvados-cli... commit | commitdiff | tree | snapshot
2014-07-07 Peter Amstutzarv-run-pipeline-instance sends error message to logs... commit | commitdiff | tree | snapshot
2014-07-07 radhikacloses #3140 commit | commitdiff | tree | snapshot
2014-07-07 Ward Vandewegecrunch-dispatch: make sure to update the info['slurm_st... commit | commitdiff | tree | snapshot
2014-07-07 radhikaMerge branch 'master' into 3140-project-content-tabs commit | commitdiff | tree | snapshot
2014-07-07 radhikaMerge branch 'master' into 3140-project-content-tabs commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzDon't render selection check boxes when using show_file... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzConsider script_parameters in determining whether to... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzDefault arvados-bcbio-nextgen pipeline to use freebayes... commit | commitdiff | tree | snapshot
2014-07-07 Peter Amstutzarvados-bcbio-nextgen writes output now. Put write_dir... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzBugfix os.environ() -> os.environ[] no issue # commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzMerge branch 'bcbio-nextgen' refs #2991 commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzAdd -n cores to run bcbio in parallel on a multicore... commit | commitdiff | tree | snapshot
2014-07-07 Peter AmstutzAdd $(node.cores) substitution to run-program, and... commit | commitdiff | tree | snapshot
2014-07-07 Peter Amstutzrun-command retry after exception when writing output... commit | commitdiff | tree | snapshot
2014-07-07 Ward VandewegeDoc: fix link to pipeline instances page in workbench. commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzMerge branch '3185-job-invalid-without-errors' refs... commit | commitdiff | tree | snapshot
2014-07-04 Tom Clegg3185: Fix job validation failure with no errors given. commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli... commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzMerge branch '2991-job-docker-images' refs #2991 commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzMerge branch '2342-run-command-wrapper' refs #2342 commit | commitdiff | tree | snapshot
2014-07-04 Ward VandewegeMerge branch '3141-keep-logging-improvements' commit | commitdiff | tree | snapshot
2014-07-04 Ward Vandewegekeep: MockVolume should return os.ErrNotExist instead... commit | commitdiff | tree | snapshot
2014-07-04 Ward VandewegeRevert "Do not print an error when hitting 'not found... commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli... commit | commitdiff | tree | snapshot
2014-07-04 Ward VandewegeMerge branch 'master' into 3141-keep-logging-improvements commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzDon't send null job creation parameters in arv-run... commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzDon't raise exception if filters parameter parses to commit | commitdiff | tree | snapshot
2014-07-04 Peter AmstutzDon't set "too long" flag on websocket test timer if... commit | commitdiff | tree | snapshot
2014-07-04 radhikaMerge branch 'master' into 3140-project-content-tabs commit | commitdiff | tree | snapshot
2014-07-04 radhika3140: add partials for all the content tabs commit | commitdiff | tree | snapshot
2014-07-04 radhikaoops commit | commitdiff | tree | snapshot
2014-07-03 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli... commit | commitdiff | tree | snapshot
2014-07-03 Peter AmstutzAdded note about how to build bcbio-nextgen docker... commit | commitdiff | tree | snapshot
2014-07-03 radhikaMerge branch 'master' into 3140-project-content-tabs commit | commitdiff | tree | snapshot
2014-07-03 radhikarefs #3055 commit | commitdiff | tree | snapshot
2014-07-03 radhikaMerge branch 'master' into 3055-advanced-tab-explanations commit | commitdiff | tree | snapshot
2014-07-03 radhikaMerge branch 'master' into 3055-advanced-tab-explanations commit | commitdiff | tree | snapshot
2014-07-03 Peter Amstutzjob create method parameters need to be converted to... commit | commitdiff | tree | snapshot
2014-07-03 radhika3140: add Other_objects to pane list commit | commitdiff | tree | snapshot
2014-07-03 Ward VandewegeDo not blow up trying to run a job if runtime_constrain... commit | commitdiff | tree | snapshot
2014-07-03 Ward VandewegeAdd some more detail to the docker installation page. commit | commitdiff | tree | snapshot
2014-07-03 Tom CleggMerge branch '3174-arv-ls-size-fencepost' closes #3174 commit | commitdiff | tree | snapshot
2014-07-03 Tim PierceMerge branch '2873-permission-links-ownership' commit | commitdiff | tree | snapshot
2014-07-03 Tim PierceMerge branch '2985-shared-projects-descriptions' commit | commitdiff | tree | snapshot
2014-07-03 Peter AmstutzUpdate arvados-cli dependency of API server so crunch... commit | commitdiff | tree | snapshot
2014-07-03 Tom Clegg3174: Round up, not down, when reporting file sizes... commit | commitdiff | tree | snapshot
2014-07-03 Tom Clegg3174: Heed "common" section of config yaml the same... commit | commitdiff | tree | snapshot
2014-07-03 Peter AmstutzMerge remote-tracking branch 'origin/master' into job... commit | commitdiff | tree | snapshot
2014-07-03 Ward Vandewegedocker: mkimage-debootstrap.sh: wrap which calls that... commit | commitdiff | tree | snapshot
2014-07-03 Peter Amstutz"filters" is now propagated through from pipeline compo... commit | commitdiff | tree | snapshot
2014-07-03 Peter AmstutzDocker job's $HOME is now inside docker container,... commit | commitdiff | tree | snapshot
2014-07-03 radhika3140: add additional content tabs to pane list commit | commitdiff | tree | snapshot
2014-07-03 radhika3140: Move tab line buttons, remove show filtering... commit | commitdiff | tree | snapshot
2014-07-03 Tim Pierce2873: more code review changes commit | commitdiff | tree | snapshot
2014-07-03 Peter Amstutzfix bwa_index commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzBacked that out, make a symlink to tool-data instead commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutztool-data in work commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzfix sub R1 R2 commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzrefer template directly commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzwrite template commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzopen for writing commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzfix config copy commit | commitdiff | tree | snapshot
2014-07-02 Peter Amstutzfixed syntax error commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzFixed +x commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzFirst try at bcbio-nextgen script commit | commitdiff | tree | snapshot
2014-07-02 Tim Pierce2985: display project descriptions inline commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzImprove output messages a bit commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzDo not mount $TASK_WORK inside the container; scratch... commit | commitdiff | tree | snapshot
2014-07-02 Tim PierceMerge branch '3151-permission-ttl' commit | commitdiff | tree | snapshot
2014-07-02 Tim Pierce3151: use 2-week default permission TTL commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzTypo fix ${HOME} -> $ENV{HOME} commit | commitdiff | tree | snapshot
2014-07-02 radhika3055: add explanation to the example commands in the... commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzShould probably wait to install ruby before setting... commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzUse separate $HOME for commands run outside the docker commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzUse 'install' to create /keep, /tmp/crunch-src, /tmp... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeMerge branch '3118-docker-fixes' commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeRemove superfluous cd commands commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeFix up link in the docker alert box. commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeThe linkchecker rake task should return with the exit... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeMerge branch '3118-docker-fixes' commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeAdd state of the docker installation alert to the top... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeMerge branch 'master' into 3141-keep-logging-improvements commit | commitdiff | tree | snapshot
2014-07-02 Tim Pierce2873: changes for code review commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeDo not print an error when hitting 'not found' with... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeMove error logging for block-not-found from GetBlock... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeUnixVolume has no business being loud about files that... commit | commitdiff | tree | snapshot
2014-07-02 Peter AmstutzChange crunch-dispatch to use "git fetch-pack --all... commit | commitdiff | tree | snapshot
2014-07-02 Ward VandewegeAdd documentation to doc.arvados.org for the local... commit | commitdiff | tree | snapshot
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