arvados.git
6 years agoUse configured postgres port in arvados-ws config in tests. pgport
Tom Clegg [Fri, 22 Sep 2017 20:31:46 +0000 (16:31 -0400)]
Use configured postgres port in arvados-ws config in tests.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12298-cancel-fail'
Tom Clegg [Fri, 22 Sep 2017 13:27:01 +0000 (09:27 -0400)]
Merge branch '12298-cancel-fail'

refs #12298

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12292-cwl-tmpdir-default' refs #12292
Peter Amstutz [Thu, 21 Sep 2017 15:38:49 +0000 (11:38 -0400)]
Merge branch '12292-cwl-tmpdir-default' refs #12292

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoInstall upstream pip to work around Debian bug, no issue #
Peter Amstutz [Mon, 18 Sep 2017 21:40:05 +0000 (17:40 -0400)]
Install upstream pip to work around Debian bug, no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12292: Find crunchrunner vars even when mixed into a partial line
Peter Amstutz [Wed, 20 Sep 2017 20:05:18 +0000 (16:05 -0400)]
12292: Find crunchrunner vars even when mixed into a partial line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12292: Set defaults for tmpdir, outdir, keep
Peter Amstutz [Wed, 20 Sep 2017 19:24:34 +0000 (15:24 -0400)]
12292: Set defaults for tmpdir, outdir, keep

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12298: Allow non-null log when cancelling an unrunnable container.
Tom Clegg [Wed, 20 Sep 2017 21:44:22 +0000 (17:44 -0400)]
12298: Allow non-null log when cancelling an unrunnable container.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoFix dashboard crash on uncommitted container request.
Tom Clegg [Wed, 20 Sep 2017 20:03:53 +0000 (16:03 -0400)]
Fix dashboard crash on uncommitted container request.

refs #12246

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12247-no-failed-checksum'
Tom Clegg [Wed, 20 Sep 2017 15:33:31 +0000 (11:33 -0400)]
Merge branch '12247-no-failed-checksum'

closes #12247

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12107-faster-git'
Tom Clegg [Wed, 20 Sep 2017 13:57:31 +0000 (09:57 -0400)]
Merge branch '12107-faster-git'

closes #12107

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Add protective comment.
Tom Clegg [Wed, 20 Sep 2017 13:54:47 +0000 (09:54 -0400)]
12107: Add protective comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12084-dispatch-stuck'
Tom Clegg [Wed, 20 Sep 2017 13:45:06 +0000 (09:45 -0400)]
Merge branch '12084-dispatch-stuck'

closes #12084

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12084: Fix dispatcher getting bogged down on "too many open files".
Tom Clegg [Wed, 20 Sep 2017 02:14:37 +0000 (22:14 -0400)]
12084: Fix dispatcher getting bogged down on "too many open files".

Previously, handling the "too many open files" error from popen3
consisted of sleeping 1 second and trying the next job in the
queue. When lots of jobs were queued, this meant getting stuck in
start_jobs() for a long time, futilely trying to start different jobs,
which all failed for the same reason.

Worse, being stuck here meant none of the working jobs could finish,
which meant no file descriptors could be freed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12084: Remove dead code.
Tom Clegg [Wed, 20 Sep 2017 01:54:05 +0000 (21:54 -0400)]
12084: Remove dead code.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12084: Reap children whose threads exit abnormally (status == nil).
Tom Clegg [Wed, 20 Sep 2017 01:51:38 +0000 (21:51 -0400)]
12084: Reap children whose threads exit abnormally (status == nil).

Ruby's thread status is false if the thread exited normally, nil if it
exited abnormally.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Fix test suite dependence on outer git config.
Tom Clegg [Tue, 19 Sep 2017 14:02:47 +0000 (10:02 -0400)]
12107: Fix test suite dependence on outer git config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12247: Simplify (Hash)Sum() usage.
Tom Clegg [Tue, 19 Sep 2017 14:47:06 +0000 (10:47 -0400)]
12247: Simplify (Hash)Sum() usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12247: Propagate write errors, don't hide them with "bad checksum".
Tom Clegg [Tue, 19 Sep 2017 14:37:43 +0000 (10:37 -0400)]
12247: Propagate write errors, don't hide them with "bad checksum".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Fix broken commit-exists-in-internal-repo check.
Tom Clegg [Tue, 19 Sep 2017 13:56:29 +0000 (09:56 -0400)]
12107: Fix broken commit-exists-in-internal-repo check.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Fix broken "git branch --contains" check.
Tom Clegg [Tue, 19 Sep 2017 13:52:02 +0000 (09:52 -0400)]
12107: Fix broken "git branch --contains" check.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Test fetch-and-tag on unreferenced and non-tip commits.
Tom Clegg [Mon, 18 Sep 2017 20:46:13 +0000 (16:46 -0400)]
12107: Test fetch-and-tag on unreferenced and non-tip commits.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Use a fresh internal.git repo for each test run.
Tom Clegg [Mon, 18 Sep 2017 20:41:31 +0000 (16:41 -0400)]
12107: Use a fresh internal.git repo for each test run.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoBump PhantomJS version no issue #
Peter Amstutz [Mon, 18 Sep 2017 19:13:36 +0000 (15:13 -0400)]
Bump PhantomJS version no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoArvbox explicitly initializes postgres with en_US.UTF-8 locale. no issue #
Peter Amstutz [Fri, 15 Sep 2017 15:42:01 +0000 (11:42 -0400)]
Arvbox explicitly initializes postgres with en_US.UTF-8 locale.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoFix quoting in test_with_arvbox no issue #
Peter Amstutz [Mon, 18 Sep 2017 19:09:08 +0000 (15:09 -0400)]
Fix quoting in test_with_arvbox no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch 'master' into 12107-faster-git
Tom Clegg [Mon, 18 Sep 2017 18:33:36 +0000 (14:33 -0400)]
Merge branch 'master' into 12107-faster-git

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12197-show-pdh-in-trash'
Tom Clegg [Mon, 18 Sep 2017 18:25:25 +0000 (14:25 -0400)]
Merge branch '12197-show-pdh-in-trash'

closes #12197

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch 'master' into 12197-show-pdh-in-trash
Tom Clegg [Mon, 18 Sep 2017 18:24:48 +0000 (14:24 -0400)]
Merge branch 'master' into 12197-show-pdh-in-trash

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12197: Update PDH column label for consistency.
Tom Clegg [Mon, 18 Sep 2017 18:10:40 +0000 (14:10 -0400)]
12197: Update PDH column label for consistency.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoRemove -f from 'docker tag' due to Docker update refs #12234
Peter Amstutz [Mon, 18 Sep 2017 14:13:58 +0000 (10:13 -0400)]
Remove -f from 'docker tag' due to Docker update refs #12234

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12197: Test PDH search and display on trash page.
Tom Clegg [Mon, 18 Sep 2017 03:03:29 +0000 (23:03 -0400)]
12197: Test PDH search and display on trash page.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12197: Remove trash/delete labels on content rows.
Tom Clegg [Thu, 14 Sep 2017 15:31:05 +0000 (11:31 -0400)]
12197: Remove trash/delete labels on content rows.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoArvbox support for caching and offline install of npm packages. no issue #
Peter Amstutz [Fri, 15 Sep 2017 00:22:49 +0000 (20:22 -0400)]
Arvbox support for caching and offline install of npm packages.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12248-crunch2-reversemap' closes #12248
Peter Amstutz [Thu, 14 Sep 2017 16:18:40 +0000 (12:18 -0400)]
Merge branch '12248-crunch2-reversemap' closes #12248

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12236-libcloud-blob-storage-regression'
Lucas Di Pentima [Thu, 14 Sep 2017 15:20:15 +0000 (12:20 -0300)]
Merge branch '12236-libcloud-blob-storage-regression'
Refs #12236

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12236: Bumped libcloud version dependency to 2.2.1.dev2
Lucas Di Pentima [Thu, 14 Sep 2017 15:03:28 +0000 (12:03 -0300)]
12236: Bumped libcloud version dependency to 2.2.1.dev2

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12194-search-always-valid'
Tom Clegg [Wed, 13 Sep 2017 21:07:41 +0000 (17:07 -0400)]
Merge branch '12194-search-always-valid'

closes #12194

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12197: Show UUID and PDH of trashed collections.
Tom Clegg [Wed, 13 Sep 2017 20:37:46 +0000 (16:37 -0400)]
12197: Show UUID and PDH of trashed collections.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12197: Add missing end tags.
Tom Clegg [Wed, 13 Sep 2017 20:03:07 +0000 (16:03 -0400)]
12197: Add missing end tags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12194-search-always-valid'
Tom Clegg [Wed, 13 Sep 2017 19:37:09 +0000 (15:37 -0400)]
Merge branch '12194-search-always-valid'

refs #12194

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12248: Bugfix reversemap.
Peter Amstutz [Tue, 12 Sep 2017 20:58:33 +0000 (16:58 -0400)]
12248: Bugfix reversemap.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12236-libcloud-blob-storage-regression'
Lucas Di Pentima [Wed, 13 Sep 2017 14:54:05 +0000 (11:54 -0300)]
Merge branch '12236-libcloud-blob-storage-regression'
Refs #12236

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12236: Bumped libcloud to 2.2.1.dev2 that fixes a regression
Lucas Di Pentima [Wed, 13 Sep 2017 14:47:26 +0000 (11:47 -0300)]
12236: Bumped libcloud to 2.2.1.dev2 that fixes a regression
related to alternate cloud environments.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12107: Fix unreliable use of git-fetch.
Tom Clegg [Wed, 13 Sep 2017 13:32:46 +0000 (09:32 -0400)]
12107: Fix unreliable use of git-fetch.

Git-fetch does not fetch by sha1. If we can't find and fetch a branch
containing the desired commit, we still need to fall back on
pack-objects|unpack-objects.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoFix arvbox-demo (2nd try) refs #12234
Peter Amstutz [Tue, 12 Sep 2017 16:06:53 +0000 (12:06 -0400)]
Fix arvbox-demo (2nd try) refs #12234

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12186-cwl-no-nameroot' closes #12186
Peter Amstutz [Tue, 12 Sep 2017 15:44:26 +0000 (11:44 -0400)]
Merge branch '12186-cwl-no-nameroot' closes #12186

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '10349-cookbook' closes #10349
Peter Amstutz [Tue, 12 Sep 2017 15:17:55 +0000 (11:17 -0400)]
Merge branch '10349-cookbook' closes #10349

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Add support for syntax highlighting inline code blocks.
Peter Amstutz [Tue, 12 Sep 2017 15:15:24 +0000 (11:15 -0400)]
10349: Add support for syntax highlighting inline code blocks.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Add code snippet for combining collections.
Peter Amstutz [Tue, 12 Sep 2017 13:47:59 +0000 (09:47 -0400)]
10349: Add code snippet for combining collections.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoFix arvbox-demo refs #12234
Peter Amstutz [Mon, 11 Sep 2017 18:04:05 +0000 (14:04 -0400)]
Fix arvbox-demo refs #12234

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12234-arvbox-stretch' refs #12234
Peter Amstutz [Mon, 11 Sep 2017 17:21:31 +0000 (13:21 -0400)]
Merge branch '12234-arvbox-stretch' refs #12234

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Fix formatting. Add link from user guide to improve discoverability.
Peter Amstutz [Mon, 11 Sep 2017 15:57:54 +0000 (11:57 -0400)]
10349: Fix formatting.  Add link from user guide to improve discoverability.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12234: Need --system so pip installs SDK packages globally.
Peter Amstutz [Mon, 11 Sep 2017 15:51:21 +0000 (11:51 -0400)]
12234: Need --system so pip installs SDK packages globally.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Add snippts for listing inputs/outputs of containers, failed child
Peter Amstutz [Mon, 11 Sep 2017 14:59:02 +0000 (10:59 -0400)]
10349: Add snippts for listing inputs/outputs of containers, failed child
requests, list logs of request.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Add "Create a collection sharing link"
Peter Amstutz [Wed, 30 Aug 2017 21:33:13 +0000 (17:33 -0400)]
10349: Add "Create a collection sharing link"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10349: Working on Python code snippits for manipulating container requests.
Peter Amstutz [Mon, 14 Aug 2017 13:33:00 +0000 (09:33 -0400)]
10349: Working on Python code snippits for manipulating container requests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12186: Filter nameroot from runner-submitted input object.
Peter Amstutz [Tue, 29 Aug 2017 16:56:55 +0000 (12:56 -0400)]
12186: Filter nameroot from runner-submitted input object.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12186: Filter nameroot/nameext from RunInSingleContainer and update test.
Peter Amstutz [Tue, 29 Aug 2017 16:48:59 +0000 (12:48 -0400)]
12186: Filter nameroot/nameext from RunInSingleContainer and update test.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12234: Update arvbox to Debian stretch, Docker 17, Postgres 9.6
Peter Amstutz [Fri, 8 Sep 2017 16:58:43 +0000 (12:58 -0400)]
12234: Update arvbox to Debian stretch, Docker 17, Postgres 9.6

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '10472-csummary-cwl-pipeline'
Tom Clegg [Fri, 8 Sep 2017 16:22:49 +0000 (12:22 -0400)]
Merge branch '10472-csummary-cwl-pipeline'

closes #10472
closes #12221

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Fix npm sanity-check recipe.
Tom Clegg [Fri, 8 Sep 2017 16:20:26 +0000 (12:20 -0400)]
12033: Fix npm sanity-check recipe.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Use itervalues() instead of iteritems() if key is not used.
Tom Clegg [Fri, 8 Sep 2017 16:17:29 +0000 (12:17 -0400)]
10472: Use itervalues() instead of iteritems() if key is not used.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Fix logging format.
Tom Clegg [Fri, 8 Sep 2017 14:05:34 +0000 (10:05 -0400)]
10472: Fix logging format.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12221: Merge branch '12221-crunchstat-summary-valueerror'
Tom Clegg [Fri, 8 Sep 2017 13:52:32 +0000 (09:52 -0400)]
12221: Merge branch '12221-crunchstat-summary-valueerror'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12194: Update comment.
Tom Clegg [Fri, 8 Sep 2017 13:50:26 +0000 (09:50 -0400)]
12194: Update comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12194: Handle to_tsquery(null).
Tom Clegg [Fri, 8 Sep 2017 02:17:39 +0000 (22:17 -0400)]
12194: Handle to_tsquery(null).

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12107: Use git-fetch instead of pack|unpack, and only when needed.
Tom Clegg [Fri, 8 Sep 2017 02:12:12 +0000 (22:12 -0400)]
12107: Use git-fetch instead of pack|unpack, and only when needed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12194: Fix empty search case.
Tom Clegg [Fri, 8 Sep 2017 01:45:23 +0000 (21:45 -0400)]
12194: Fix empty search case.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12194: Fix accidentally mutated argument.
Tom Clegg [Fri, 8 Sep 2017 01:08:57 +0000 (21:08 -0400)]
12194: Fix accidentally mutated argument.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12194: Construct @@ operands more carefully to avoid bad API munge.
Tom Clegg [Fri, 8 Sep 2017 01:03:38 +0000 (21:03 -0400)]
12194: Construct @@ operands more carefully to avoid bad API munge.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Merge branch 'master' into 10472-csummary-cwl-pipeline
Tom Clegg [Thu, 7 Sep 2017 21:04:58 +0000 (17:04 -0400)]
10472: Merge branch 'master' into 10472-csummary-cwl-pipeline

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Add test for arvados-cwl-runner job tree.
Tom Clegg [Thu, 7 Sep 2017 21:03:04 +0000 (17:03 -0400)]
10472: Add test for arvados-cwl-runner job tree.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Fix tests.
Tom Clegg [Thu, 7 Sep 2017 13:05:39 +0000 (09:05 -0400)]
12033: Fix tests.

refs #12033

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: browserify is needed in production env, for package-building.
Tom Clegg [Thu, 7 Sep 2017 02:57:27 +0000 (22:57 -0400)]
12033: browserify is needed in production env, for package-building.

refs #12033

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Fix tests.
Tom Clegg [Wed, 6 Sep 2017 22:54:44 +0000 (18:54 -0400)]
12033: Fix tests.

refs #12033

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Fix tests.
Tom Clegg [Wed, 6 Sep 2017 22:33:13 +0000 (18:33 -0400)]
12033: Fix tests.

refs #12033

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Un-bork text reports.
Tom Clegg [Wed, 6 Sep 2017 21:06:23 +0000 (17:06 -0400)]
10472: Un-bork text reports.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Follow job trees made by arvados-cwl-runner jobs.
Tom Clegg [Wed, 6 Sep 2017 20:12:20 +0000 (16:12 -0400)]
10472: Follow job trees made by arvados-cwl-runner jobs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago10472: Conserve FDs by not opening collections until ready to read.
Tom Clegg [Wed, 6 Sep 2017 20:06:39 +0000 (16:06 -0400)]
10472: Conserve FDs by not opening collections until ready to read.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12033-multisite-search'
Tom Clegg [Wed, 6 Sep 2017 19:02:35 +0000 (15:02 -0400)]
Merge branch '12033-multisite-search'

refs #12033

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoFix typo in python documentation.
Ward Vandewege [Wed, 6 Sep 2017 15:24:12 +0000 (11:24 -0400)]
Fix typo in python documentation.

closes #12222

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years ago12033: Document one-SaveUIState-per-page limitation.
Tom Clegg [Wed, 6 Sep 2017 15:09:27 +0000 (11:09 -0400)]
12033: Document one-SaveUIState-per-page limitation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Document SaveUIState.
Tom Clegg [Wed, 6 Sep 2017 15:06:07 +0000 (11:06 -0400)]
12033: Document SaveUIState.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoApply a few gofmt -s fixes.
Ward Vandewege [Wed, 6 Sep 2017 14:49:51 +0000 (10:49 -0400)]
Apply a few gofmt -s fixes.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoAdd Running to excluded non-categories. Improve error
Tom Morris [Tue, 5 Sep 2017 21:23:23 +0000 (17:23 -0400)]
Add Running to excluded non-categories. Improve error

6 years agoMerge branch '12212-aws-instance-profile'
Lucas Di Pentima [Tue, 5 Sep 2017 21:02:04 +0000 (18:02 -0300)]
Merge branch '12212-aws-instance-profile'
refs #12212

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12033: Skip "show" btn if guessed workbench link is obviously wrong.
Tom Clegg [Tue, 5 Sep 2017 20:29:55 +0000 (16:29 -0400)]
12033: Skip "show" btn if guessed workbench link is obviously wrong.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Merge branch 'master' into 12033-multisite-search
Tom Clegg [Tue, 5 Sep 2017 20:27:44 +0000 (16:27 -0400)]
12033: Merge branch 'master' into 12033-multisite-search

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12212: Added example on web documentation
Lucas Di Pentima [Tue, 5 Sep 2017 19:45:59 +0000 (16:45 -0300)]
12212: Added example on web documentation

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12190-s3-read-after-write'
Tom Clegg [Tue, 5 Sep 2017 19:39:57 +0000 (15:39 -0400)]
Merge branch '12190-s3-read-after-write'

refs #12190

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12190: Don't test block existence before first write.
Tom Clegg [Mon, 4 Sep 2017 20:42:08 +0000 (16:42 -0400)]
12190: Don't test block existence before first write.

"Amazon S3 provides read-after-write consistency for PUTS of new
objects in your S3 bucket in all regions with one caveat. The caveat
is that if you make a HEAD or GET request to the key name (to find if
the object exists) before creating the object, Amazon S3 provides
eventual consistency for read-after-write."

-- http://docs.aws.amazon.com/AmazonS3/latest/dev/Introduction.html#ConsistencyModel

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12212: Adding configuration example for apllying instance profiles to created
Lucas Di Pentima [Mon, 4 Sep 2017 15:43:58 +0000 (12:43 -0300)]
12212: Adding configuration example for apllying instance profiles to created
computed nodes.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12055: Merge branch '12055-nodemanager-ec2-tags'
Lucas Di Pentima [Fri, 1 Sep 2017 22:03:51 +0000 (19:03 -0300)]
12055: Merge branch '12055-nodemanager-ec2-tags'
Closes #12055

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12055: Avoid RAM exhaustion on bootup by asking AWS only the AMI
Lucas Di Pentima [Fri, 1 Sep 2017 20:06:54 +0000 (17:06 -0300)]
12055: Avoid RAM exhaustion on bootup by asking AWS only the AMI
list owned by 'self'. refs #9223 #12163

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12134-llfuse-patch'
Tom Clegg [Fri, 1 Sep 2017 15:29:46 +0000 (11:29 -0400)]
Merge branch '12134-llfuse-patch'

refs #12134

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12055: Merge branch 'master' into 12055-nodemanager-ec2-tags
Lucas Di Pentima [Thu, 31 Aug 2017 20:16:02 +0000 (17:16 -0300)]
12055: Merge branch 'master' into 12055-nodemanager-ec2-tags

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12055: Updated dev version number & dependency scripts
Lucas Di Pentima [Thu, 31 Aug 2017 20:15:16 +0000 (17:15 -0300)]
12055: Updated dev version number & dependency scripts

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago10472: Ignore "Running [command]" log message from crunchstat.
Tom Clegg [Thu, 31 Aug 2017 14:18:34 +0000 (10:18 -0400)]
10472: Ignore "Running [command]" log message from crunchstat.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago4878: Fix whitespace and missing </p> tag.
Tom Clegg [Wed, 30 Aug 2017 15:27:02 +0000 (11:27 -0400)]
4878: Fix whitespace and missing </p> tag.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12033: Avoid startsWith(), unsupported in test suite.
Tom Clegg [Wed, 30 Aug 2017 15:19:26 +0000 (11:19 -0400)]
12033: Avoid startsWith(), unsupported in test suite.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>