arvados.git
9 years ago3413: add TrashHandler, package trash 3413-keep-trash-handler
Tim Pierce [Tue, 26 Aug 2014 20:39:51 +0000 (16:39 -0400)]
3413: add TrashHandler, package trash

Added a trash collector interface for handling the trash list from Data
Manager.

"PUT /trash" requests are routed to the TrashHandler, which verifies
that the request was sent by Data Manager and consists of a valid trash
list.  The TrashHandler sends the list to a trash.Collector goroutine
for handling.

TestTrashHandler simulates trash requests from the data manager and from
an ordinary user, using syntactically valid and invalid trash lists.  It
verifies that the trash collector goroutine received at least one valid
list of the correct size.

9 years agocloses #3620
radhika [Tue, 26 Aug 2014 18:47:46 +0000 (14:47 -0400)]
closes #3620
Merge branch '3620-admin-only-gear-menu'

9 years agoMerge branch 'master' into 3620-admin-only-gear-menu
radhika [Tue, 26 Aug 2014 18:45:43 +0000 (14:45 -0400)]
Merge branch 'master' into 3620-admin-only-gear-menu

9 years agocloses #3642
radhika [Tue, 26 Aug 2014 18:45:03 +0000 (14:45 -0400)]
closes #3642
Merge branch '3642-search-for-active-only'

9 years ago3620: change menu item role from presentation to menuitem for clickable links. http...
radhika [Tue, 26 Aug 2014 18:42:53 +0000 (14:42 -0400)]
3620: change menu item role from presentation to menuitem for clickable links. w3.org/TR/wai-aria/roles#role_definitions

9 years agoMerge branch 'master' into 3642-search-for-active-only
radhika [Tue, 26 Aug 2014 18:04:48 +0000 (14:04 -0400)]
Merge branch 'master' into 3642-search-for-active-only

9 years agoMerge branch 'master' into 3620-admin-only-gear-menu
radhika [Tue, 26 Aug 2014 18:00:05 +0000 (14:00 -0400)]
Merge branch 'master' into 3620-admin-only-gear-menu

9 years agocloses #3112
radhika [Tue, 26 Aug 2014 17:57:50 +0000 (13:57 -0400)]
closes #3112
Merge branch '3112-report-bug'

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 17:57:19 +0000 (13:57 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: 404 error page default message while reporting issue
radhika [Tue, 26 Aug 2014 17:56:30 +0000 (13:56 -0400)]
3112: 404 error page default message while reporting issue

9 years agoFixed missing import in robust_put. no issue #
Peter Amstutz [Tue, 26 Aug 2014 17:51:42 +0000 (13:51 -0400)]
Fixed missing import in robust_put.  no issue #

9 years ago3112: login_tests works with javascript driver
radhika [Tue, 26 Aug 2014 17:20:43 +0000 (13:20 -0400)]
3112: login_tests works with javascript driver

9 years ago3112: still the login_tests fails when ran in the entire suite
radhika [Tue, 26 Aug 2014 17:10:23 +0000 (13:10 -0400)]
3112: still the login_tests fails when ran in the entire suite

9 years ago3112: removed rack_test driver and added selenium driver. still the test "trying...
radhika [Tue, 26 Aug 2014 16:30:26 +0000 (12:30 -0400)]
3112: removed rack_test driver and added selenium driver. still the test "trying to use expired token redirects to login page" fails when the entire suite is tested, but passes when this one test file is executed.

9 years ago3112: add scrollbar to the report issue popup
radhika [Tue, 26 Aug 2014 16:10:05 +0000 (12:10 -0400)]
3112: add scrollbar to the report issue popup

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 15:42:01 +0000 (11:42 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: skip filters in actions controller, instead of application controller
radhika [Tue, 26 Aug 2014 15:40:36 +0000 (11:40 -0400)]
3112: skip filters in actions controller, instead of application controller

9 years agoMerge branch '3136-stale-pipeline-instance-display' closes #3136
Peter Amstutz [Tue, 26 Aug 2014 15:36:12 +0000 (11:36 -0400)]
Merge branch '3136-stale-pipeline-instance-display' closes #3136

9 years ago3112: no need to reload after sending report.
radhika [Tue, 26 Aug 2014 15:32:59 +0000 (11:32 -0400)]
3112: no need to reload after sending report.

9 years agoMerge branch '3147-pysdk-retries'
Brett Smith [Tue, 26 Aug 2014 15:32:10 +0000 (11:32 -0400)]
Merge branch '3147-pysdk-retries'

Closes #3147.

9 years ago3147: Fix unwanted integer division in KeepClient logs.
Brett Smith [Tue, 26 Aug 2014 00:58:37 +0000 (20:58 -0400)]
3147: Fix unwanted integer division in KeepClient logs.

9 years ago3147: Add retry support to Python SDK's KeepClient.
Brett Smith [Fri, 22 Aug 2014 17:38:40 +0000 (13:38 -0400)]
3147: Add retry support to Python SDK's KeepClient.

9 years ago3147: Remove old Keep signing support from Python SDK.
Brett Smith [Fri, 22 Aug 2014 19:57:36 +0000 (15:57 -0400)]
3147: Remove old Keep signing support from Python SDK.

Per Tom.

9 years ago3147: Add check_http_response_success to Python SDK.
Brett Smith [Tue, 26 Aug 2014 13:46:46 +0000 (09:46 -0400)]
3147: Add check_http_response_success to Python SDK.

Other parts of the SDK need to end loops based on the result of an
HTTP request.  This function puts that logic in one place.

9 years ago3147: Add RetryLoop to the Python SDK.
Brett Smith [Tue, 26 Aug 2014 13:46:17 +0000 (09:46 -0400)]
3147: Add RetryLoop to the Python SDK.

This provides a general-purpose mechanism for us to retry all kinds of
operations.

9 years ago3147: Move fake Python HTTP response generation to arvados_testutil.
Brett Smith [Thu, 21 Aug 2014 15:13:23 +0000 (11:13 -0400)]
3147: Move fake Python HTTP response generation to arvados_testutil.

Other tests can use this functionality.

9 years ago3136: Use map to correctly get the list of uuids. Check that there is a job
Peter Amstutz [Tue, 26 Aug 2014 15:25:01 +0000 (11:25 -0400)]
3136: Use map to correctly get the list of uuids.  Check that there is a job
record before trying to use it.

9 years agoFix test. refs #3149
Tom Clegg [Tue, 26 Aug 2014 15:24:32 +0000 (11:24 -0400)]
Fix test. refs #3149

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 15:17:24 +0000 (11:17 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoFix migration and api templates that rely on changes that did not end up happening...
Tom Clegg [Tue, 26 Aug 2014 15:14:07 +0000 (11:14 -0400)]
Fix migration and api templates that rely on changes that did not end up happening. refs #3036

9 years agoMerge branch '3149-server-side-search' closes #3149
Tom Clegg [Tue, 26 Aug 2014 15:00:53 +0000 (11:00 -0400)]
Merge branch '3149-server-side-search' closes #3149

9 years ago3149: Merge branch 'master' into 3149-server-side-search
Tom Clegg [Tue, 26 Aug 2014 15:00:16 +0000 (11:00 -0400)]
3149: Merge branch 'master' into 3149-server-side-search

9 years agoSet up arvados env vars when running arv-normalize. No issue #
Tom Clegg [Tue, 26 Aug 2014 13:49:37 +0000 (09:49 -0400)]
Set up arvados env vars when running arv-normalize. No issue #

9 years agoMerge branch '3036-collection-uuids' closes #3036
Peter Amstutz [Tue, 26 Aug 2014 14:45:17 +0000 (10:45 -0400)]
Merge branch '3036-collection-uuids' closes #3036

9 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Tue, 26 Aug 2014 14:43:41 +0000 (10:43 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
services/api/test/fixtures/groups.yml

9 years ago3036: Fix merge conflicts. One python sdk test still fails.
Peter Amstutz [Tue, 26 Aug 2014 12:48:08 +0000 (08:48 -0400)]
3036: Fix merge conflicts.  One python sdk test still fails.

9 years agoMove styles out of tab partial. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:41:53 +0000 (01:41 -0400)]
Move styles out of tab partial. No issue #

9 years agoPropagate query params to tab panes. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:29:04 +0000 (01:29 -0400)]
Propagate query params to tab panes. No issue #

9 years agoRemove uuid-guessing code from "combine selected files". refs #3504
Tom Clegg [Tue, 26 Aug 2014 04:20:13 +0000 (00:20 -0400)]
Remove uuid-guessing code from "combine selected files". refs #3504

9 years agoDo not blow up in install stage when TASK_WORK is not set. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:51:25 +0000 (23:51 -0400)]
Do not blow up in install stage when TASK_WORK is not set. No issue #

9 years agoDo not blow up when tmp directory already exists. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:26:38 +0000 (23:26 -0400)]
Do not blow up when tmp directory already exists. No issue #

9 years agoMerge branch '3112-report-bug' into 3642-search-for-active-only
radhika [Tue, 26 Aug 2014 03:16:58 +0000 (23:16 -0400)]
Merge branch '3112-report-bug' into 3642-search-for-active-only

9 years agoMerge branch '3112-report-bug' into 3620-admin-only-gear-menu
radhika [Tue, 26 Aug 2014 03:16:22 +0000 (23:16 -0400)]
Merge branch '3112-report-bug' into 3620-admin-only-gear-menu

9 years ago3112: alert left justification
radhika [Tue, 26 Aug 2014 03:12:55 +0000 (23:12 -0400)]
3112: alert left justification

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 03:09:37 +0000 (23:09 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3149: Clarify comments. Stick with a-b-c data keys where possible;
Tom Clegg [Tue, 26 Aug 2014 02:29:11 +0000 (22:29 -0400)]
3149: Clarify comments. Stick with a-b-c data keys where possible;
when not possible, explain why not.

9 years agoMerge branch '3149-filter-any' refs #3149
Tom Clegg [Tue, 26 Aug 2014 01:50:41 +0000 (21:50 -0400)]
Merge branch '3149-filter-any' refs #3149

9 years ago3149: Explain what "any" does as a filter attribute.
Tom Clegg [Tue, 26 Aug 2014 01:48:47 +0000 (21:48 -0400)]
3149: Explain what "any" does as a filter attribute.

9 years agoFix test fixtures breaking Workbench tests. refs #3171
Tom Clegg [Tue, 26 Aug 2014 01:33:57 +0000 (21:33 -0400)]
Fix test fixtures breaking Workbench tests. refs #3171

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 01:26:43 +0000 (21:26 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoDo not blow up when stdout!=subprocess.PIPE. no issue #
Tom Clegg [Tue, 26 Aug 2014 00:59:37 +0000 (20:59 -0400)]
Do not blow up when stdout!=subprocess.PIPE. no issue #

9 years agoMerge branch '3660-project-editable' closes #3660
Tom Clegg [Tue, 26 Aug 2014 00:41:43 +0000 (20:41 -0400)]
Merge branch '3660-project-editable' closes #3660

9 years ago3660: Clarify self-contradicting comment.
Tom Clegg [Tue, 26 Aug 2014 00:41:23 +0000 (20:41 -0400)]
3660: Clarify self-contradicting comment.

9 years agoUpdate Gemfile.lock. refs #3405
Tom Clegg [Tue, 26 Aug 2014 00:34:00 +0000 (20:34 -0400)]
Update Gemfile.lock. refs #3405

9 years agoMerge branch '3171-admin-groups' closes #3171
Tom Clegg [Tue, 26 Aug 2014 00:24:56 +0000 (20:24 -0400)]
Merge branch '3171-admin-groups' closes #3171

9 years agoInstead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
Tom Clegg [Tue, 26 Aug 2014 00:24:12 +0000 (20:24 -0400)]
Instead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
in setup script.

Without this, scripts that write to arvados.current_job().tmpdir
(i.e., JOB_WORK) fail.

No issue #

9 years agoMerge branch '3112-report-bug' into 3642-search-for-active-only
radhika [Mon, 25 Aug 2014 23:31:33 +0000 (19:31 -0400)]
Merge branch '3112-report-bug' into 3642-search-for-active-only

9 years ago3620: minor test update
radhika [Mon, 25 Aug 2014 23:30:18 +0000 (19:30 -0400)]
3620: minor test update

9 years agoMerge branch '3112-report-bug' into 3620-admin-only-gear-menu
radhika [Mon, 25 Aug 2014 23:21:08 +0000 (19:21 -0400)]
Merge branch '3112-report-bug' into 3620-admin-only-gear-menu

9 years ago3112: move manage account testing into its own file
radhika [Mon, 25 Aug 2014 23:19:41 +0000 (19:19 -0400)]
3112: move manage account testing into its own file

9 years agoMerge branch '3112-report-bug' into 3642-search-for-active-only
radhika [Mon, 25 Aug 2014 21:33:36 +0000 (17:33 -0400)]
Merge branch '3112-report-bug' into 3642-search-for-active-only

9 years agoMerge branch '3112-report-bug' into 3620-admin-only-gear-menu
radhika [Mon, 25 Aug 2014 21:32:18 +0000 (17:32 -0400)]
Merge branch '3112-report-bug' into 3620-admin-only-gear-menu

9 years ago3112: update issue report routes config and some other minor test updates.
radhika [Mon, 25 Aug 2014 21:20:51 +0000 (17:20 -0400)]
3112: update issue report routes config and some other minor test updates.

9 years agoDo not blow up with pipeline has a plain value in a script_parameter. No issue #
Tom Clegg [Mon, 25 Aug 2014 20:53:02 +0000 (16:53 -0400)]
Do not blow up with pipeline has a plain value in a script_parameter. No issue #

9 years ago3112: fix indentation
radhika [Mon, 25 Aug 2014 20:52:39 +0000 (16:52 -0400)]
3112: fix indentation

9 years ago3112: add some space below the submit button and alert panel
radhika [Mon, 25 Aug 2014 20:43:58 +0000 (16:43 -0400)]
3112: add some space below the submit button and alert panel

9 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Mon, 25 Aug 2014 20:29:32 +0000 (16:29 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
sdk/python/arvados/commands/put.py
services/api/app/controllers/application_controller.rb
services/api/app/controllers/arvados/v1/collections_controller.rb
services/api/app/models/arvados_model.rb
services/api/test/fixtures/groups.yml
services/api/test/fixtures/links.yml

9 years ago3112: minor cleanup
radhika [Mon, 25 Aug 2014 20:25:58 +0000 (16:25 -0400)]
3112: minor cleanup

9 years agoMerge branch '3112-report-bug' into 3620-admin-only-gear-menu
radhika [Mon, 25 Aug 2014 18:37:38 +0000 (14:37 -0400)]
Merge branch '3112-report-bug' into 3620-admin-only-gear-menu

9 years agoMerge branch '3112-report-bug' into 3642-search-for-active-only
radhika [Mon, 25 Aug 2014 18:37:07 +0000 (14:37 -0400)]
Merge branch '3112-report-bug' into 3642-search-for-active-only

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 18:36:55 +0000 (14:36 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3642: display search box in topnav only to active users
radhika [Mon, 25 Aug 2014 18:32:46 +0000 (14:32 -0400)]
3642: display search box in topnav only to active users

9 years agoMerge branch '3171-group-membership' refs #3171
Tom Clegg [Mon, 25 Aug 2014 18:16:11 +0000 (14:16 -0400)]
Merge branch '3171-group-membership' refs #3171

9 years ago3171: Merge branch 'master' into 3171-group-membership
Tom Clegg [Mon, 25 Aug 2014 18:15:57 +0000 (14:15 -0400)]
3171: Merge branch 'master' into 3171-group-membership

Conflicts:
services/api/test/fixtures/links.yml

9 years ago3171: Fix wording, update docs.
Tom Clegg [Mon, 25 Aug 2014 18:12:37 +0000 (14:12 -0400)]
3171: Fix wording, update docs.

9 years ago3620: display gear menu to admin users only. update the layout tests accordingly.
radhika [Mon, 25 Aug 2014 17:56:05 +0000 (13:56 -0400)]
3620: display gear menu to admin users only. update the layout tests accordingly.

9 years agoMerge branch '3448-keep-put-timestamps'
Tim Pierce [Mon, 25 Aug 2014 17:31:01 +0000 (13:31 -0400)]
Merge branch '3448-keep-put-timestamps'

Closes #3448.

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 17:29:39 +0000 (13:29 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: minor update in application layout test
radhika [Mon, 25 Aug 2014 16:09:41 +0000 (12:09 -0400)]
3112: minor update in application layout test

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 16:04:20 +0000 (12:04 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: Move profile testing out of application_layout_test.rb into it's own file for...
radhika [Mon, 25 Aug 2014 16:02:57 +0000 (12:02 -0400)]
3112: Move profile testing out of application_layout_test.rb into it's own file for better testability.

9 years agoDo not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
Ward Vandewege [Mon, 25 Aug 2014 15:39:05 +0000 (11:39 -0400)]
Do not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
arguments to Rails.

no issue #

9 years agoDo not blow up in crunch-dispatch: fix syntax error. Ouch.
Ward Vandewege [Mon, 25 Aug 2014 15:29:53 +0000 (11:29 -0400)]
Do not blow up in crunch-dispatch: fix syntax error. Ouch.

no issue #

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 15:13:51 +0000 (11:13 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3448: update tests with "untouchable" volumes
Tim Pierce [Mon, 25 Aug 2014 14:40:28 +0000 (10:40 -0400)]
3448: update tests with "untouchable" volumes

Added a "Touchable" flag to MockVolume, so that we can test that
PutBlock does the right thing when Touch fails.  Previous code was using
volume.Bad as an attempt to test this, but that short-circuited the Put
request before it ever attempted to call Touch.

Added TODOs with more testing improvements we can make as time permits.

9 years agoMerge branch 'multiple-dispatch' no issue #
Tom Clegg [Mon, 25 Aug 2014 14:16:27 +0000 (10:16 -0400)]
Merge branch 'multiple-dispatch' no issue #

9 years agocrunch-dispatch can run --jobs, --pipelines, or both.
Tom Clegg [Mon, 25 Aug 2014 14:05:14 +0000 (10:05 -0400)]
crunch-dispatch can run --jobs, --pipelines, or both.

9 years ago3136: Fetch actual job objects for use in rendering pipeline jobs.
Peter Amstutz [Mon, 25 Aug 2014 13:23:34 +0000 (09:23 -0400)]
3136: Fetch actual job objects for use in rendering pipeline jobs.

9 years agoWith new apiserver, after upload, arv-put prints portable data hash instead of
Peter Amstutz [Mon, 25 Aug 2014 12:51:47 +0000 (08:51 -0400)]
With new apiserver, after upload, arv-put prints portable data hash instead of
collection uuid for compatibility with crunch.  refs #3504

9 years ago3149: Propagate filters from remote->dialog->infinite. Fix tests.
Tom Clegg [Mon, 25 Aug 2014 03:43:53 +0000 (23:43 -0400)]
3149: Propagate filters from remote->dialog->infinite. Fix tests.

9 years ago3149: Do not blow up on small devices/windows.
Tom Clegg [Mon, 25 Aug 2014 02:40:09 +0000 (22:40 -0400)]
3149: Do not blow up on small devices/windows.

9 years ago3149: Do not preload results in search dialog. Let infinite scroll do it.
Tom Clegg [Mon, 25 Aug 2014 02:23:43 +0000 (22:23 -0400)]
3149: Do not preload results in search dialog. Let infinite scroll do it.

9 years ago3149: Fix infinite scroll not updating after retry/refresh.
Tom Clegg [Mon, 25 Aug 2014 02:09:42 +0000 (22:09 -0400)]
3149: Fix infinite scroll not updating after retry/refresh.

9 years ago3149: Fix user-controlled filters overwriting page-controlled filters.
Tom Clegg [Mon, 25 Aug 2014 01:36:40 +0000 (21:36 -0400)]
3149: Fix user-controlled filters overwriting page-controlled filters.

9 years ago3149: Let Workbench server do all the filtering where infinite-scroll facilities...
Tom Clegg [Sun, 24 Aug 2014 23:58:54 +0000 (19:58 -0400)]
3149: Let Workbench server do all the filtering where infinite-scroll facilities exist.

9 years ago3149: Propagate search string to Workbench server using filters param.
Tom Clegg [Sun, 24 Aug 2014 22:46:29 +0000 (18:46 -0400)]
3149: Propagate search string to Workbench server using filters param.

9 years ago3149: Untabify.
Tom Clegg [Sun, 24 Aug 2014 21:22:50 +0000 (17:22 -0400)]
3149: Untabify.

9 years ago3149: Fix operator precedence in SQL statements built from record_filters.
Tom Clegg [Mon, 25 Aug 2014 01:50:22 +0000 (21:50 -0400)]
3149: Fix operator precedence in SQL statements built from record_filters.

9 years ago3149: Support "ilike" operator in record_filters.
Tom Clegg [Sun, 24 Aug 2014 23:48:28 +0000 (19:48 -0400)]
3149: Support "ilike" operator in record_filters.

9 years ago3149: Support "any" and array in filter "column" element.
Tom Clegg [Sun, 24 Aug 2014 22:48:48 +0000 (18:48 -0400)]
3149: Support "any" and array in filter "column" element.