arvados.git
3 weeks ago21651: Remove unused imports and squelch warnings 21651-cmd-card-virtual-list
Stephen Smith [Sun, 7 Apr 2024 17:55:57 +0000 (13:55 -0400)]
21651: Remove unused imports and squelch warnings

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Improve formatting and remove warnings
Stephen Smith [Sun, 7 Apr 2024 17:02:10 +0000 (13:02 -0400)]
21651: Improve formatting and remove warnings

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Update browserdb
Stephen Smith [Sun, 7 Apr 2024 16:24:18 +0000 (12:24 -0400)]
21651: Update browserdb

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Update io card unit tests for virtual list
Stephen Smith [Sat, 6 Apr 2024 03:05:57 +0000 (23:05 -0400)]
21651: Update io card unit tests for virtual list

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Change io panel json tab to virtual list, fix layout issues
Stephen Smith [Fri, 5 Apr 2024 23:57:31 +0000 (19:57 -0400)]
21651: Change io panel json tab to virtual list, fix layout issues

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Create CopyResultToClipboard to format cmd for clipboard using callback
Stephen Smith [Fri, 5 Apr 2024 23:21:19 +0000 (19:21 -0400)]
21651: Create CopyResultToClipboard to format cmd for clipboard using callback

Performs formatting on large text only when clicked

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Add line formatter to VirtualCodeSnippet to do cmd card line processing
Stephen Smith [Sat, 6 Apr 2024 01:46:29 +0000 (21:46 -0400)]
21651: Add line formatter to VirtualCodeSnippet to do cmd card line processing

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21651: Add virtual code snippet, implement in cmd card
Stephen Smith [Fri, 5 Apr 2024 21:43:16 +0000 (17:43 -0400)]
21651: Add virtual code snippet, implement in cmd card

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks agoRevert "Merge branch '21583-railsapi-base64-gem'"
Brett Smith [Fri, 5 Apr 2024 15:02:34 +0000 (11:02 -0400)]
Revert "Merge branch '21583-railsapi-base64-gem'"

This reverts commit ec67d31d1c519c4b1b624f6df0534d27f39f3ed9, reversing
changes made to e792b65d396b15b2c6c90ab2ab70d19c81f98460.

Refs #21583.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

3 weeks agoMerge branch '21448-menu-reorder'
Lisa Knox [Fri, 5 Apr 2024 13:11:35 +0000 (09:11 -0400)]
Merge branch '21448-menu-reorder'

closes #21448

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks agoMerge branch '21508-io-panel-performance' into main. Closes #21508
Stephen Smith [Thu, 4 Apr 2024 19:06:32 +0000 (15:06 -0400)]
Merge branch '21508-io-panel-performance' into main. Closes #21508

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks agoMerge branch '21639-keep-cache-dict' refs #21639
Peter Amstutz [Thu, 4 Apr 2024 16:36:15 +0000 (12:36 -0400)]
Merge branch '21639-keep-cache-dict' refs #21639

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks ago21639: Add type hint to cachelist
Peter Amstutz [Thu, 4 Apr 2024 15:57:54 +0000 (11:57 -0400)]
21639: Add type hint to cachelist

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks agoMerge branch '21583-railsapi-base64-gem'
Brett Smith [Thu, 4 Apr 2024 14:11:47 +0000 (10:11 -0400)]
Merge branch '21583-railsapi-base64-gem'

Refs #21583.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

3 weeks ago21583: Add test for base64 gem lock 21583-railsapi-base64-gem
Brett Smith [Thu, 4 Apr 2024 13:39:35 +0000 (09:39 -0400)]
21583: Add test for base64 gem lock

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

3 weeks ago21639: Have to actually re-add storage classes test 21639-keep-cache-dict
Peter Amstutz [Wed, 3 Apr 2024 21:32:45 +0000 (17:32 -0400)]
21639: Have to actually re-add storage classes test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks ago21639: PEP8 cleanup
Peter Amstutz [Wed, 3 Apr 2024 21:28:37 +0000 (17:28 -0400)]
21639: PEP8 cleanup

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks ago21639: Code cleanup
Peter Amstutz [Wed, 3 Apr 2024 21:17:50 +0000 (17:17 -0400)]
21639: Code cleanup

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks ago21639: Move KeepStorageClassesTestCase to another file
Peter Amstutz [Wed, 3 Apr 2024 20:44:42 +0000 (16:44 -0400)]
21639: Move KeepStorageClassesTestCase to another file

It was failing due to some crosstalk with another test in test_keep_client.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21448: adjusted test specs Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii... 21448-menu-reorder
Lisa Knox [Wed, 3 Apr 2024 15:52:11 +0000 (11:52 -0400)]
21448: adjusted test specs Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: removed toolbar width transition Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Wed, 3 Apr 2024 15:26:50 +0000 (11:26 -0400)]
21448: removed toolbar width transition Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21508: Make io panel cypress test more robust 21508-io-panel-performance
Stephen Smith [Wed, 3 Apr 2024 15:23:59 +0000 (11:23 -0400)]
21508: Make io panel cypress test more robust

Scrolls each checked input into view to advance virtual list and enumerates all
expected params

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21448: added default multiselect order Arvados-DCO-1.1-Signed-off-by: Lisa Knox ...
Lisa Knox [Wed, 3 Apr 2024 15:04:14 +0000 (11:04 -0400)]
21448: added default multiselect order Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21508: Fix unit test for io panel by mocking autosizer for virtuallist
Stephen Smith [Wed, 3 Apr 2024 14:10:29 +0000 (10:10 -0400)]
21508: Fix unit test for io panel by mocking autosizer for virtuallist

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21639: Adjust test mocking
Peter Amstutz [Wed, 3 Apr 2024 13:57:00 +0000 (09:57 -0400)]
21639: Adjust test mocking

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21448: moved share button to 1st in 2nd group menuArvados-DCO-1.1-Signed-off-by:...
Lisa Knox [Wed, 3 Apr 2024 13:55:39 +0000 (09:55 -0400)]
21448: moved share button to 1st in 2nd group menuArvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: fixed dividers in toolbar menuArvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Wed, 3 Apr 2024 13:46:24 +0000 (09:46 -0400)]
21448: fixed dividers in toolbar menuArvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks agoMerge branch '21601-setuptools-git-deps'
Brett Smith [Tue, 2 Apr 2024 21:18:58 +0000 (17:18 -0400)]
Merge branch '21601-setuptools-git-deps'

Refs #21601.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

4 weeks ago21601: Add test for arvados_version.py synchronization 21601-setuptools-git-deps
Brett Smith [Tue, 2 Apr 2024 20:50:41 +0000 (16:50 -0400)]
21601: Add test for arvados_version.py synchronization

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

4 weeks ago21508: Fix process io cypress tests, remove image preview test
Stephen Smith [Tue, 2 Apr 2024 20:32:47 +0000 (16:32 -0400)]
21508: Fix process io cypress tests, remove image preview test

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Tweak io panel name column width
Stephen Smith [Tue, 2 Apr 2024 19:51:42 +0000 (15:51 -0400)]
21508: Tweak io panel name column width

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Add tooltip to external http/s files
Stephen Smith [Tue, 2 Apr 2024 19:28:34 +0000 (15:28 -0400)]
21508: Add tooltip to external http/s files

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Add tooltip helpers for primitive & primitive array display
Stephen Smith [Tue, 2 Apr 2024 17:54:44 +0000 (13:54 -0400)]
21508: Add tooltip helpers for primitive & primitive array display

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

21508: add guard

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21448: removed dividers from overflow menuArvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Tue, 2 Apr 2024 18:35:15 +0000 (14:35 -0400)]
21448: removed dividers from overflow menuArvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks agoMerge branch '21613-fed-token-exp'
Tom Clegg [Tue, 2 Apr 2024 17:01:44 +0000 (13:01 -0400)]
Merge branch '21613-fed-token-exp'

fixes #21613

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21508: Fix panel container sizing and json tab scrollbars
Stephen Smith [Tue, 2 Apr 2024 15:53:03 +0000 (11:53 -0400)]
21508: Fix panel container sizing and json tab scrollbars

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks agoMerge branch '21541-arv-mount-keyerror-rebase' refs #21541
Peter Amstutz [Tue, 2 Apr 2024 15:26:33 +0000 (11:26 -0400)]
Merge branch '21541-arv-mount-keyerror-rebase' refs #21541

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21639: Make sure it is a mmap object before calling madvise
Peter Amstutz [Tue, 2 Apr 2024 15:23:20 +0000 (11:23 -0400)]
21639: Make sure it is a mmap object before calling madvise

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21508: Add wrappers to chips and move ellipsis styles to fix tooltip alignment
Stephen Smith [Tue, 2 Apr 2024 14:52:49 +0000 (10:52 -0400)]
21508: Add wrappers to chips and move ellipsis styles to fix tooltip alignment

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21541: Code cleanups 21541-arv-mount-keyerror-rebase
Peter Amstutz [Tue, 2 Apr 2024 14:52:09 +0000 (10:52 -0400)]
21541: Code cleanups

* Remove the gc threshold change
* Add/improve comments
* Use "truthy" tests instead of len(foo) > 0

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks agoMerge branch '21636-s3-token-expiry'
Tom Clegg [Tue, 2 Apr 2024 14:44:44 +0000 (10:44 -0400)]
Merge branch '21636-s3-token-expiry'

fixes #21636

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21636: Increase ExpiryWindow and add doc reference. 21636-s3-token-expiry
Tom Clegg [Tue, 2 Apr 2024 14:43:59 +0000 (10:43 -0400)]
21636: Increase ExpiryWindow and add doc reference.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks agoMerge branch '21598-local-keepstore-emptytrash'
Tom Clegg [Tue, 2 Apr 2024 14:28:26 +0000 (10:28 -0400)]
Merge branch '21598-local-keepstore-emptytrash'

fixes #21598

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21639: Don't try to madvise zero length blocks
Peter Amstutz [Tue, 2 Apr 2024 14:05:41 +0000 (10:05 -0400)]
21639: Don't try to madvise zero length blocks

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21508: Rename class for clarity
Stephen Smith [Tue, 2 Apr 2024 13:56:19 +0000 (09:56 -0400)]
21508: Rename class for clarity

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21639: Tell the kernel to map in whole blocks with madvise
Peter Amstutz [Tue, 2 Apr 2024 13:19:34 +0000 (09:19 -0400)]
21639: Tell the kernel to map in whole blocks with madvise

This increases cold cache performance from 150 MB/s to 400 MB/s

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21508: Remove remaining io panel image preview code
Stephen Smith [Tue, 2 Apr 2024 13:15:04 +0000 (09:15 -0400)]
21508: Remove remaining io panel image preview code

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Condense io panel css and remove redundant wrappers/rules
Stephen Smith [Tue, 2 Apr 2024 02:31:14 +0000 (22:31 -0400)]
21508: Condense io panel css and remove redundant wrappers/rules

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Fix io panel json content width
Stephen Smith [Tue, 2 Apr 2024 01:08:07 +0000 (21:08 -0400)]
21508: Fix io panel json content width

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Add helpful comments to styles
Stephen Smith [Tue, 2 Apr 2024 01:07:35 +0000 (21:07 -0400)]
21508: Add helpful comments to styles

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Add virtual list to io panel and styles to make sizing behave
Stephen Smith [Tue, 2 Apr 2024 01:06:33 +0000 (21:06 -0400)]
21508: Add virtual list to io panel and styles to make sizing behave

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21639: Note about 0 prefetch threads
Peter Amstutz [Tue, 2 Apr 2024 00:32:49 +0000 (20:32 -0400)]
21639: Note about 0 prefetch threads

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21639: Keep a running total instead of recomputing total
Peter Amstutz [Tue, 2 Apr 2024 00:17:22 +0000 (20:17 -0400)]
21639: Keep a running total instead of recomputing total

From profiling, it turns out just summing the block sizes to get the
cache usage was a significant drag on the read() fast path.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21639: Improve critical path of read() from cache
Peter Amstutz [Mon, 1 Apr 2024 19:58:06 +0000 (15:58 -0400)]
21639: Improve critical path of read() from cache

* Don't use tobytes(), it makes a copy, and it should be be zero-copy.
* Prefetching adds a lot of overhead.  Don't do it.
* Don't use a list comprehension to calculate cache size

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21508: Split mounts and param table styles
Stephen Smith [Sun, 7 Apr 2024 19:48:00 +0000 (15:48 -0400)]
21508: Split mounts and param table styles

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Remove image preview from io panel
Stephen Smith [Mon, 1 Apr 2024 14:41:35 +0000 (10:41 -0400)]
21508: Remove image preview from io panel

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21508: Expand secondary param values into separate parameters
Stephen Smith [Fri, 29 Mar 2024 23:34:05 +0000 (19:34 -0400)]
21508: Expand secondary param values into separate parameters

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

4 weeks ago21613: Fix handling of expired token re-validating with new UUID. 21613-fed-token-exp
Tom Clegg [Mon, 1 Apr 2024 21:51:43 +0000 (17:51 -0400)]
21613: Fix handling of expired token re-validating with new UUID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21448: fixed user-profile test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Mon, 1 Apr 2024 17:36:16 +0000 (13:36 -0400)]
21448: fixed user-profile test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: removed move to from processes Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Mon, 1 Apr 2024 16:59:47 +0000 (12:59 -0400)]
21448: removed move to from processes Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: fixed user profile test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Mon, 1 Apr 2024 15:50:54 +0000 (11:50 -0400)]
21448: fixed user profile test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21639: Don't return broken cache slots
Peter Amstutz [Mon, 1 Apr 2024 15:10:52 +0000 (11:10 -0400)]
21639: Don't return broken cache slots

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21448: changed int tests to new menu orders Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Mon, 1 Apr 2024 15:07:01 +0000 (11:07 -0400)]
21448: changed int tests to new menu orders Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: fixed toolbar divider so it renders consistently Arvados-DCO-1.1-Signed-off...
Lisa Knox [Mon, 1 Apr 2024 13:55:50 +0000 (09:55 -0400)]
21448: fixed toolbar divider so it renders consistently Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21639: Use a more efficient data structure for the keep block cache
Peter Amstutz [Mon, 1 Apr 2024 13:52:53 +0000 (09:52 -0400)]
21639: Use a more efficient data structure for the keep block cache

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21636: Test http status returned for unknown backend errors.
Tom Clegg [Mon, 1 Apr 2024 13:20:02 +0000 (09:20 -0400)]
21636: Test http status returned for unknown backend errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21636: Set ExpiryWindow to avoid credential expiry races.
Tom Clegg [Fri, 29 Mar 2024 20:58:23 +0000 (16:58 -0400)]
21636: Set ExpiryWindow to avoid credential expiry races.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks agoMerge branch '21617-fed-content'
Tom Clegg [Fri, 29 Mar 2024 20:39:09 +0000 (16:39 -0400)]
Merge branch '21617-fed-content'

fixes #21617
fixes #21533

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21617: Split test cases.
Tom Clegg [Fri, 29 Mar 2024 20:37:43 +0000 (16:37 -0400)]
21617: Split test cases.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21448: divider in place for toolbar menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 29 Mar 2024 18:44:24 +0000 (14:44 -0400)]
21448: divider in place for toolbar menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: divider in place for context menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 29 Mar 2024 17:54:48 +0000 (13:54 -0400)]
21448: divider in place for context menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: expanded copy to oclipboard change Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 29 Mar 2024 15:20:41 +0000 (11:20 -0400)]
21448: expanded copy to oclipboard change Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: channged wording Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii...
Lisa Knox [Fri, 29 Mar 2024 15:15:03 +0000 (11:15 -0400)]
21448: channged wording Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: ms toolbar sorted Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii...
Lisa Knox [Fri, 29 Mar 2024 15:08:11 +0000 (11:08 -0400)]
21448: ms toolbar sorted Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: removed share from process menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox ...
Lisa Knox [Fri, 29 Mar 2024 14:26:14 +0000 (10:26 -0400)]
21448: removed share from process menu Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: running process also sorted Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 29 Mar 2024 14:07:02 +0000 (10:07 -0400)]
21448: running process also sorted Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: applied sort to all context menus in ticket Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Fri, 29 Mar 2024 13:48:10 +0000 (09:48 -0400)]
21448: applied sort to all context menus in ticket Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21583: Override base64 dependency so it doesn't appear in Gemfile.lock
Brett Smith [Thu, 14 Mar 2024 15:17:24 +0000 (11:17 -0400)]
21583: Override base64 dependency so it doesn't appear in Gemfile.lock

See comments and linked bug for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

4 weeks ago21448: sorter sorts Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Thu, 28 Mar 2024 18:51:28 +0000 (14:51 -0400)]
21448: sorter sorts Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: initial sorting algo in place Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Thu, 28 Mar 2024 17:37:54 +0000 (13:37 -0400)]
21448: initial sorting algo in place Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: adjusted specs to fit capitalization standardization Arvados-DCO-1.1-Signed...
Lisa Knox [Thu, 28 Mar 2024 15:01:26 +0000 (11:01 -0400)]
21448: adjusted specs to fit capitalization standardization Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21598: Don't run trash workers in container-local keepstore. 21598-local-keepstore-emptytrash
Tom Clegg [Thu, 28 Mar 2024 14:57:44 +0000 (10:57 -0400)]
21598: Don't run trash workers in container-local keepstore.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 weeks ago21448: combined contextmenunames and mstoolbaractionnames since they were mostly...
Lisa Knox [Thu, 28 Mar 2024 14:36:21 +0000 (10:36 -0400)]
21448: combined contextmenunames and mstoolbaractionnames since they were mostly duplicated and serve the same purpose Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21448: replaced all context menu names with string constants Arvados-DCO-1.1-Signed...
Lisa Knox [Thu, 28 Mar 2024 13:21:21 +0000 (09:21 -0400)]
21448: replaced all context menu names with string constants Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

4 weeks ago21541: Fix typo
Peter Amstutz [Thu, 28 Mar 2024 12:17:59 +0000 (08:17 -0400)]
21541: Fix typo

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21541: Revert change to safeapi.py
Peter Amstutz [Wed, 27 Mar 2024 21:14:28 +0000 (17:14 -0400)]
21541: Revert change to safeapi.py

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 weeks ago21541: Code cleanup and additional memory usage improvements
Peter Amstutz [Mon, 25 Mar 2024 18:19:32 +0000 (14:19 -0400)]
21541: Code cleanup and additional memory usage improvements

* Add slots to major Directory classes

* Disconnect FuseArvadosFile from ArvadosFile to reduce cyclic
references.

* Clean up _remove_inode loop and use dataclasses for the inode
operations.

* Now calls del_entry on collection_record_file and project_object_file.

It looks like collection_record_file was holding a reference to the
Collection object (and was remaining in the inodes table) even when
CollectionDirectory was cleared.  I believe this is the memory leak I
have been looking for.

* Remove the "dead" flag and set parent_inode to None instead.  This
clarifies the behavior that directory entries keep their (numeric)
inodes until they are detached from the directory which may have
contributed to infrequent "file not found" errors.

* Adjust cache behavior to only hold objects that are cache-eligible
and have non-zero cache_size.  This avoids filling the cache with
entries that are just going to be skipped over.

Overall: Memory usage is mostly stable but does tend to creep up over
time.  My best guess is that this is forced because we need to keep
inodes in RAM as long as the kernel maintains a reference to them, so
with multiple processes accessing different filesystem locations, this
is simply RAM required for the working set.

I'm also cautiously optimistic that issues I observed with performance
slowing down with long-lived processes are improved (e.g. fixing
memory leaks means no more unbounded growth of cache_entries, which
means no more time wasted iterating over huge lists).

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 weeks ago21448: expanded string constants Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Wed, 27 Mar 2024 15:47:59 +0000 (11:47 -0400)]
21448: expanded string constants Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

5 weeks ago21448: created string constants for menu items Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Wed, 27 Mar 2024 14:01:51 +0000 (10:01 -0400)]
21448: created string constants for menu items Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

5 weeks ago21617: Test unauthenticated endpoint + LoginCluster + bad token. 21617-fed-content
Tom Clegg [Tue, 26 Mar 2024 14:01:28 +0000 (10:01 -0400)]
21617: Test unauthenticated endpoint + LoginCluster + bad token.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 weeks ago21617: Interpret any 4xx as token rejection, not an error.
Tom Clegg [Tue, 26 Mar 2024 02:30:10 +0000 (22:30 -0400)]
21617: Interpret any 4xx as token rejection, not an error.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 weeks ago21617: Accept bogus tokens at endpoints that do not require auth.
Tom Clegg [Mon, 25 Mar 2024 21:25:10 +0000 (17:25 -0400)]
21617: Accept bogus tokens at endpoints that do not require auth.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 weeks ago21508: Fix cross origin io parameter image previews
Stephen Smith [Mon, 25 Mar 2024 15:47:19 +0000 (11:47 -0400)]
21508: Fix cross origin io parameter image previews

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

5 weeks ago21508: Normalize io panel row height
Stephen Smith [Mon, 25 Mar 2024 15:46:52 +0000 (11:46 -0400)]
21508: Normalize io panel row height

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

5 weeks ago21601: Ensure pip is new enough to support package building
Brett Smith [Sun, 24 Mar 2024 03:26:58 +0000 (23:26 -0400)]
21601: Ensure pip is new enough to support package building

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

5 weeks ago21601: Build Python distro packages from wheels
Brett Smith [Sat, 23 Mar 2024 18:16:35 +0000 (14:16 -0400)]
21601: Build Python distro packages from wheels

The immediate problem this solves is that, by building and installing
from a repository of wheels, Python packages can find their
interdependencies without any special logic in the build process.

Other benefits:

* Eliminates some redundant work. We don't have to build the Python SDK
  from source multiple times. We can use the published cwltest wheel
  instead of building our own.

* Prepares the code for PEP 517 compliance. We only invoke setup.py to
  build packages that have not been updated yet. We introspect packages
  from their wheels, so we no longer have to introspect the source to
  build distro packages.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

5 weeks ago21601: Remove PySDK from `install deps`
Brett Smith [Sat, 23 Mar 2024 18:17:47 +0000 (14:17 -0400)]
21601: Remove PySDK from `install deps`

It's already installed by `install env`. ðŸ¤·

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

5 weeks ago21601: Install wheel in run-tests.sh VENV3DIR
Brett Smith [Tue, 19 Mar 2024 03:04:59 +0000 (23:04 -0400)]
21601: Install wheel in run-tests.sh VENV3DIR

We do this basically everywhere else in our build infrastructure, so
doing it here helps avoid discrepancies between those environments.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

5 weeks ago21601: Specify Python interdependencies with ~=
Brett Smith [Sat, 16 Mar 2024 23:23:44 +0000 (19:23 -0400)]
21601: Specify Python interdependencies with ~=

This has the same rationale as using <= before, but it's stricter. It
should prevent pip from using release versions to satisfy development
dependencies in the future, and help root out bugs in our build
processes.

DRY up this logic in arvados_version.py.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

5 weeks ago21601: Move --short-tests-only check to arvados_version
Brett Smith [Sat, 16 Mar 2024 23:10:15 +0000 (19:10 -0400)]
21601: Move --short-tests-only check to arvados_version

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>