Lucas Di Pentima [Wed, 5 Aug 2020 11:58:40 +0000 (08:58 -0300)]
16470: Avoids crashing when running rake db:create. WIP
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 4 Aug 2020 14:52:44 +0000 (11:52 -0300)]
16470: Fixes unrelated typo.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 3 Aug 2020 22:24:00 +0000 (19:24 -0300)]
16470: Fixes collection versioning management code.
Collection versioning management is implemented on an 'around_update' callback
so some 'attribute_changed()' & 'changes()' calls changed behaviour depending
on which side of the 'yield' were made.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 31 Jul 2020 19:43:40 +0000 (16:43 -0300)]
16470: Fixes test database creation problem.
There was a behaviour change on rake tasks that avoided the creation of the
test database. See: https://github.com/rails/rails/issues/32870
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 31 Jul 2020 17:38:20 +0000 (14:38 -0300)]
16470: File updates & additions from 'rake rails:update'
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 20:51:16 +0000 (17:51 -0300)]
16470: Fixes deprecation warning.
Explained at: https://github.com/rails/rails/pull/29619#issuecomment-
392583498
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 20:40:09 +0000 (17:40 -0300)]
16470: Removes exception deprecated on rails 3.2
Its substitute is already being used.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 19:54:22 +0000 (16:54 -0300)]
16470: Upgrades rails to 5.2
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 19:16:29 +0000 (16:16 -0300)]
16470: Fixes false unpersisted status when retrieving a record with audit logs.
The cleanest solution I came up with is to flag the instance when it's
retrieved from the database, and reset any changes after stashing its
state on the log_start_state callback.
Haven't found a way to read the serialized attributes without making
them appear as changed, and I think it isn't possible because the
attributes have to be unserialized before the read operation, and thus
the dirty state machinery would assume the attribute may be modified.
This solution isn't ideal, but I think it's acceptable as it doesn't
make additional database requests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 16:55:50 +0000 (13:55 -0300)]
16470: Adds ArvadosModel test exposing a bug with audit logs.
When audit logs are enabled, fetching objects from models with serialized
attributes (for example: User or ContainerRequest) return an unpersisted
instance even if reload() is called on it.
This is a problem because from Rails 5.2, lock!() and with_lock() will raise
an exception when called on unpersisted instances.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 24 Jul 2020 20:12:27 +0000 (17:12 -0300)]
16470: Fixes the last deprecation warnings.
It turned out that .lock!() is an ActiveRecord method, and I was confusing it
with Container::lock and ContainerRequest::lock.
Both lock! and with_lock methods need the record to be persisted or reloaded
explicitly.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 24 Jul 2020 14:47:16 +0000 (11:47 -0300)]
16470: Fixes test on user model.
Rails 5.1 deprecated the attr_changed? in favor of more explicit methods
because there was ambiguity when called from an 'after' or 'before' callback.
The test UsersTest#test_cannot_set_is_active_to_false_directly started failing
because User.setup is called from both types of callbacks, so its internal
checks weren't passing in some cases.
Also, avoids doing unnecessary queries to get the 'All users' group.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 23 Jul 2020 20:54:32 +0000 (17:54 -0300)]
16470: Changes the way of setting the callback that sets the DB timezone.
This avoids intermittent freezes when running tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 21 Jul 2020 17:21:49 +0000 (14:21 -0300)]
16470: Adds an explicit reload before every pending with_lock call.
Previous versions of rails did an implicit reload when calling with_lock,
but from 5.2 calling with_lock with unpersisted changes will raise an
exception.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 21 Jul 2020 14:18:24 +0000 (11:18 -0300)]
16470: Removes cleanup code on test. All threads share a db connection.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 21 Jul 2020 13:22:41 +0000 (10:22 -0300)]
16470: Removes unnecessary gem that may also cause issues.
The gem doesn't seem to be used anywhere and may not be needed
anymore.
See: https://github.com/rails/rails/issues/28197#issuecomment-
291120834
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:40:38 +0000 (11:40 -0300)]
16470: Fixes reload() API to match the overridden function.
reload()'s documentation states: "...in addition to the in-place modification
the method returns self for convenience."
https://api.rubyonrails.org/v5.1.7/classes/ActiveRecord/Persistence.html#method-i-reload
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:36:06 +0000 (11:36 -0300)]
16470: Avoids DB connection closing when running tests on missing places.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:35:00 +0000 (11:35 -0300)]
16470: Fixes internal API usage.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 15 Jul 2020 14:14:09 +0000 (11:14 -0300)]
16470: Fixes tests. Avoids closing a DB connection when using threads on tests.
From Rails 5.1, test threads share a database connection, so UpdatePriority
won't try to close DB connections when running from tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 6 Jul 2020 22:07:29 +0000 (19:07 -0300)]
16470: Fixes deprecation warnings on unit tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 6 Jul 2020 19:44:19 +0000 (16:44 -0300)]
16470: Updates Rails API to 5.1.7
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 1 Jul 2020 21:42:41 +0000 (18:42 -0300)]
16470: Bumps dependency on activesupport for rails upgrade.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Thu, 23 Jul 2020 13:13:53 +0000 (09:13 -0400)]
The arvados-docker-cleaner packages on Debian 10 and Ubuntu
18.04 (and later, presumably) have a dependency on the python3-distutils
package.
closes #16611
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Wed, 22 Jul 2020 20:28:57 +0000 (16:28 -0400)]
16623: Add NetworkResourceGroup to install-dispatch-cloud
refs #16623
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 22 Jul 2020 18:58:59 +0000 (14:58 -0400)]
16623: Add NetworkResourceGroup option for Azure
refs #16623
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Wed, 22 Jul 2020 20:09:53 +0000 (16:09 -0400)]
Merge branch '16585-keep-exercise-improvements'
closes #16585
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 22 Jul 2020 20:09:19 +0000 (16:09 -0400)]
Merge branch 'master' into 16585-keep-exercise-improvements
refs #16585
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 21 Jul 2020 21:10:40 +0000 (17:10 -0400)]
16585: implement review feedback.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 21:02:11 +0000 (17:02 -0400)]
Merge branch '16584-with-schemas' refs #16584
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 21:01:57 +0000 (17:01 -0400)]
Merge branch '16377-missing-default' refs #16377
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 20:59:14 +0000 (16:59 -0400)]
Merge branch '16353-cwl-1.2' refs #16353
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 20 Jul 2020 23:21:14 +0000 (19:21 -0400)]
16585: fix memory leak when -repeat is specified and -rthreads is not
zero. Always skip warmup phase when -rthreads is zero.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Mon, 20 Jul 2020 22:11:18 +0000 (18:11 -0400)]
16353: Handle a few mount point edge cases.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 20 Jul 2020 19:59:29 +0000 (15:59 -0400)]
16353: Support CWL 1.2 behavior for mounting at arbitrary container path
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:34:33 +0000 (09:34 -0400)]
Merge branch 'golharam-use_mktemp'
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:33:19 +0000 (09:33 -0400)]
Merge branch 'use_mktemp' of https://github.com/golharam/arvados into golharam-use_mktemp
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:28:56 +0000 (09:28 -0400)]
Merge branch 'mr-c-patch-1'
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:14:59 +0000 (09:14 -0400)]
Merge branch 'patch-1' of https://github.com/mr-c/arvados into mr-c-patch-1
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Tue, 14 Jul 2020 21:42:56 +0000 (18:42 -0300)]
Merge branch '16589-arv-fed-migrate-fixes'
Closes #16589
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 14 Jul 2020 21:33:17 +0000 (18:33 -0300)]
16589: Changes error message wording.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Thu, 25 Jun 2020 21:36:19 +0000 (17:36 -0400)]
16377: Fix CollectionFsAccess.exists to catch IOError & return False
Add test to reproduce
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 14 Jul 2020 17:19:14 +0000 (13:19 -0400)]
16584: Fix http tests for change in naming
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Jul 2020 21:39:50 +0000 (17:39 -0400)]
16584: Add --skip-schemas (passthrough to cwltool)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Jul 2020 21:36:45 +0000 (17:36 -0400)]
16584: collection name quote slashes in http_to_keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 14 Jul 2020 17:19:14 +0000 (13:19 -0400)]
16584: Don't consume exception in set_crunch_output
Fix a couple of incorrect tests that were hidden by this.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Tue, 14 Jul 2020 16:43:47 +0000 (13:43 -0300)]
16589: Fixes name collision error matching, enhances admin migration message.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 13 Jul 2020 21:58:47 +0000 (18:58 -0300)]
16589: Properly reports error when a name collision happens.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 13 Jul 2020 21:31:23 +0000 (18:31 -0300)]
16589: Changes default data migration behavior.
Now all users' data will be moved to the target account's home project unless
--data-into-subproject is used.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 13 Jul 2020 21:03:44 +0000 (18:03 -0300)]
16589: Enhances error message when admin status doesn't match.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Mon, 13 Jul 2020 18:12:26 +0000 (14:12 -0400)]
Merge branch '16534-testable'
refs #16534
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 13 Jul 2020 15:20:10 +0000 (11:20 -0400)]
16353: Bump cwltool version
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 13 Jul 2020 13:26:53 +0000 (09:26 -0400)]
Merge branch '16573-keep-deduplication-reporting-tool'
closes #16573
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 13 Jul 2020 13:25:11 +0000 (09:25 -0400)]
16573: address a few more review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 13 Jul 2020 01:34:02 +0000 (21:34 -0400)]
16573: address review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Fri, 10 Jul 2020 17:09:36 +0000 (14:09 -0300)]
16589: Removes debugging import.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 10 Jul 2020 16:17:22 +0000 (13:17 -0300)]
16589: Fixes test check.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 10 Jul 2020 15:22:39 +0000 (12:22 -0300)]
16589: Migrates users' first & last names.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Fri, 10 Jul 2020 14:53:46 +0000 (10:53 -0400)]
16573: Merge branch 'master' into 16573-keep-deduplication-reporting-tool
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Fri, 10 Jul 2020 14:05:41 +0000 (11:05 -0300)]
16589: Adds checks testing that migrated users get their first & last names.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Thu, 9 Jul 2020 21:31:46 +0000 (17:31 -0400)]
16585: add -useIndex flag. Remove global variables.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Thu, 9 Jul 2020 21:00:17 +0000 (18:00 -0300)]
16589: Fixes dry-run mode. Adds command arg to avoid subproject creation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 9 Jul 2020 15:09:18 +0000 (11:09 -0400)]
16534: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 9 Jul 2020 14:24:55 +0000 (10:24 -0400)]
16534: Get ready to pass parent handle to controllers.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 9 Jul 2020 14:07:59 +0000 (10:07 -0400)]
16534: Move RoutableFunc to lib/controller/api.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Mon, 29 Jun 2020 20:53:38 +0000 (16:53 -0400)]
16573: add a deduplication-report command to arvados-client
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 7 Jul 2020 20:56:21 +0000 (16:56 -0400)]
16585: simplify the code: use a context instead of a channel for the
timer and catching signals.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Tue, 7 Jul 2020 18:40:08 +0000 (14:40 -0400)]
16534: Add/fix comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 7 Jul 2020 17:55:04 +0000 (13:55 -0400)]
16353: Initialize 'builder' with document version
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 7 Jul 2020 17:23:11 +0000 (13:23 -0400)]
16353: Bump schema salad and cwltool versions for v1.2.0-dev4 support
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 6 Jul 2020 13:37:32 +0000 (09:37 -0400)]
16585: Add --repeat cli argument, which automatically repeats an
expirement N times. Add warmup phase to ensure there are always
sufficient blocks available for all read threads. Refactor nextLocator
to be an atomic.Value instead of a channel, to avoid read starvation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Tue, 7 Jul 2020 14:51:31 +0000 (10:51 -0400)]
Install old version of XML package from source.
refs #16586
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Tue, 7 Jul 2020 13:27:43 +0000 (09:27 -0400)]
Documentation: fix nginx snippets, remove warnings.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Mon, 6 Jul 2020 20:00:35 +0000 (16:00 -0400)]
16534: Move controller transaction/context code to its own package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 6 Jul 2020 18:18:18 +0000 (14:18 -0400)]
Merge branch '15348-pam-module'
refs #15348
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 6 Jul 2020 13:51:12 +0000 (09:51 -0400)]
16534: Exempt go.mod and go.sum from license header check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 6 Jul 2020 13:47:46 +0000 (09:47 -0400)]
16534: Supply *sqlx.Tx to controller handlers.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 2 Jul 2020 20:53:51 +0000 (16:53 -0400)]
15348: Fix packaging bug that was ignoring fpm-info.sh for Go progs.
Until now, the libpam-arvados-go dependency on ca-certificates and the
keep-web dependency on mailcap/mime-support were listed correctly in
fpm-info.sh, but they weren't expressed in the packages because
run-library.sh was looking for fpm-info.sh in the wrong place.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 2 Jul 2020 15:20:16 +0000 (11:20 -0400)]
15348: Tweak README wording.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 2 Jul 2020 14:48:15 +0000 (10:48 -0400)]
15348: Look up hostname if not provided in config args.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 19:28:47 +0000 (15:28 -0400)]
15348: Add README to libpam-arvados-go package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 19:05:28 +0000 (15:05 -0400)]
15348: Update webshell install docs to use new pam package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 19:01:38 +0000 (15:01 -0400)]
15348: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 18:49:49 +0000 (14:49 -0400)]
15348: Rename libpam-arvados-experimental -> libpam-arvados-go.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 18:48:29 +0000 (14:48 -0400)]
15348: Use normal (packaged) path in docker test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 18:46:02 +0000 (14:46 -0400)]
15348: Add config example to libpam-arvados package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 18:23:54 +0000 (14:23 -0400)]
15348: Add ca-certificates as pam package dependency.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Jul 2020 03:56:40 +0000 (23:56 -0400)]
Merge branch '16534-localdb-postgresql'
refs #16534
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Tue, 30 Jun 2020 21:02:22 +0000 (17:02 -0400)]
Fix broken link in 'Link user accounts' documentation page.
refs #16441
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Tue, 30 Jun 2020 21:01:54 +0000 (17:01 -0400)]
16534: Test goroutine safety.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 30 Jun 2020 20:29:02 +0000 (16:29 -0400)]
16534: Rename Transaction -> ContextWithTransaction.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 29 Jun 2020 21:09:39 +0000 (17:09 -0400)]
Merge branch '16441-user-merge-doc' refs #16441
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 29 Jun 2020 21:06:51 +0000 (17:06 -0400)]
16441: Typo fix, used 'zzzzz' in examples.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 29 Jun 2020 18:55:55 +0000 (14:55 -0400)]
Restore check for 'id' field for CWL v1.0 only
On further research, I realized why the check for 'id' on embedded
process objects was in place (to catch potential id conflicts earlier
instead of later), however the underlying problem is resolved in cwl
1.1+
refs #16382
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 29 Jun 2020 18:45:10 +0000 (14:45 -0400)]
Fixed default value bug, don't expect test to fail any more
refs #16382
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 29 Jun 2020 15:17:52 +0000 (11:17 -0400)]
Merge branch '16568-python3-arvados-python-client-package-test'
closes #16568
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 29 Jun 2020 15:16:21 +0000 (11:16 -0400)]
16568: add package test files for the python3 arvados python client
packages.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 29 Jun 2020 13:00:48 +0000 (09:00 -0400)]
Merge branch '6649-document-webshell'
closes #6649
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 29 Jun 2020 13:00:28 +0000 (09:00 -0400)]
6649: Merge branch 'master' into 6649-document-webshell
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Thu, 25 Jun 2020 16:04:20 +0000 (12:04 -0400)]
6649: Document webshell installation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
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