arvados.git
4 years ago14716: fixes test (wip) 14716-test
Lucas Di Pentima [Fri, 9 Aug 2019 12:35:06 +0000 (09:35 -0300)]
14716: fixes test (wip)

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Remove Host header rewrite in integration test proxy config.
Tom Clegg [Thu, 8 Aug 2019 19:47:03 +0000 (15:47 -0400)]
14716: Remove Host header rewrite in integration test proxy config.

Now that keep-web and Workbench see the same ExternalURL value in the
cluster config file, Nginx needs to leave the Host header alone (like
in production) instead of rewriting it to the fake value "download".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14716: Migrates NodeProfiles to Services on arvbox.
Lucas Di Pentima [Thu, 8 Aug 2019 15:13:18 +0000 (12:13 -0300)]
14716: Migrates NodeProfiles to Services on arvbox.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: wb integration tests (wip)
Lucas Di Pentima [Thu, 8 Aug 2019 00:36:14 +0000 (21:36 -0300)]
14716: wb integration tests (wip)

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Updates arvbox scripts
Lucas Di Pentima [Wed, 7 Aug 2019 22:17:18 +0000 (19:17 -0300)]
14716: Updates arvbox scripts

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch 'master' into 14716-webdav-cluster-config
Lucas Di Pentima [Tue, 6 Aug 2019 19:36:27 +0000 (16:36 -0300)]
Merge branch 'master' into 14716-webdav-cluster-config

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '14716-anonymous-token'
Tom Clegg [Tue, 6 Aug 2019 19:20:03 +0000 (15:20 -0400)]
Merge branch '14716-anonymous-token'

refs #14716

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14716: Fix accidentally accepting credentials at public download URL.
Tom Clegg [Tue, 6 Aug 2019 17:59:46 +0000 (13:59 -0400)]
14716: Fix accidentally accepting credentials at public download URL.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14716: Analyzing integration test fix failure
Lucas Di Pentima [Tue, 6 Aug 2019 13:08:54 +0000 (10:08 -0300)]
14716: Analyzing integration test fix failure

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Adds upgrade notes for keep-web.
Lucas Di Pentima [Mon, 5 Aug 2019 21:10:55 +0000 (18:10 -0300)]
14716: Adds upgrade notes for keep-web.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15467-update-install-docs' refs #15467
Peter Amstutz [Mon, 5 Aug 2019 19:20:22 +0000 (15:20 -0400)]
Merge branch '15467-update-install-docs' refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14716: Updates documentation, add test check.
Lucas Di Pentima [Mon, 5 Aug 2019 18:44:34 +0000 (15:44 -0300)]
14716: Updates documentation, add test check.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMove generation of config values into arvbox cluster_config.sh
Peter Amstutz [Mon, 5 Aug 2019 17:44:31 +0000 (13:44 -0400)]
Move generation of config values into arvbox cluster_config.sh

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'run-tests-fix' refs #15467
Peter Amstutz [Mon, 5 Aug 2019 18:21:34 +0000 (14:21 -0400)]
Merge branch 'run-tests-fix' refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Fix SbatchEnvironmentVariables documentation typo
Peter Amstutz [Mon, 5 Aug 2019 18:09:24 +0000 (14:09 -0400)]
15467: Fix SbatchEnvironmentVariables documentation typo

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agorun-tests.sh fixups refs #15356
Peter Amstutz [Mon, 5 Aug 2019 17:39:54 +0000 (13:39 -0400)]
run-tests.sh fixups refs #15356

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14716: Adds legacy config test.
Lucas Di Pentima [Mon, 5 Aug 2019 16:57:18 +0000 (13:57 -0300)]
14716: Adds legacy config test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Removes old usage message.
Lucas Di Pentima [Mon, 5 Aug 2019 14:18:36 +0000 (11:18 -0300)]
14716: Removes old usage message.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Testing workbench integration test fix.
Lucas Di Pentima [Fri, 2 Aug 2019 22:25:23 +0000 (19:25 -0300)]
14716: Testing workbench integration test fix.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '12020-flaky-py-test'
Tom Clegg [Fri, 2 Aug 2019 20:33:24 +0000 (16:33 -0400)]
Merge branch '12020-flaky-py-test'

fixes #12020

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15467: Add note about units for byte sizes, reorganize config a bit
Peter Amstutz [Fri, 2 Aug 2019 20:25:13 +0000 (16:25 -0400)]
15467: Add note about units for byte sizes, reorganize config a bit

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14716: Sets anonymous user token using the new way on tests.
Lucas Di Pentima [Fri, 2 Aug 2019 19:55:48 +0000 (16:55 -0300)]
14716: Sets anonymous user token using the new way on tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15467: Fix config.default.yml for SbatchEnvironmentVariables
Peter Amstutz [Fri, 2 Aug 2019 19:19:23 +0000 (15:19 -0400)]
15467: Fix config.default.yml for SbatchEnvironmentVariables

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Replace KeepServices with SbatchEnvironmentVariables
Peter Amstutz [Fri, 2 Aug 2019 19:00:45 +0000 (15:00 -0400)]
15467: Replace KeepServices with SbatchEnvironmentVariables

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Formatting fixes
Peter Amstutz [Fri, 2 Aug 2019 15:03:50 +0000 (11:03 -0400)]
15467: Formatting fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Added tests for KeepServices
Peter Amstutz [Fri, 2 Aug 2019 14:46:11 +0000 (10:46 -0400)]
15467: Added tests for KeepServices

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Adding KeepServices WIP
Peter Amstutz [Thu, 1 Aug 2019 13:49:58 +0000 (09:49 -0400)]
15467: Adding KeepServices WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Update install docs for crunch-dispatch-slurm
Peter Amstutz [Wed, 31 Jul 2019 19:05:23 +0000 (15:05 -0400)]
15467: Update install docs for crunch-dispatch-slurm

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Updating ws docs wip
Peter Amstutz [Wed, 31 Jul 2019 18:08:01 +0000 (14:08 -0400)]
15467: Updating ws docs wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoFix discovery doc dockerImageFormats, refs #15467
Peter Amstutz [Fri, 2 Aug 2019 18:33:30 +0000 (14:33 -0400)]
Fix discovery doc dockerImageFormats, refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agorun-tests ensure that ARVADOS_CONFIG is set, refs #15467
Peter Amstutz [Fri, 2 Aug 2019 17:18:30 +0000 (13:18 -0400)]
run-tests ensure that ARVADOS_CONFIG is set, refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14716: Updates run_test_server script to run keep-web without deprecated flags.
Lucas Di Pentima [Fri, 2 Aug 2019 15:26:08 +0000 (12:26 -0300)]
14716: Updates run_test_server script to run keep-web without deprecated flags.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoFix DisabledAPIs in schema controller, keys are symbols, refs #15467
Peter Amstutz [Fri, 2 Aug 2019 13:44:46 +0000 (09:44 -0400)]
Fix DisabledAPIs in schema controller, keys are symbols, refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '14813-wb2-config'
Eric Biagiotti [Thu, 1 Aug 2019 19:13:29 +0000 (15:13 -0400)]
Merge branch '14813-wb2-config'

refs #14813
2

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14716: Fixes tests (WIP)
Lucas Di Pentima [Wed, 24 Jul 2019 12:50:09 +0000 (09:50 -0300)]
14716: Fixes tests (WIP)

One test case pending.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Migrates to new config.
Lucas Di Pentima [Wed, 24 Jul 2019 12:48:41 +0000 (09:48 -0300)]
14716: Migrates to new config.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Adds legacy keep-web config loading.
Lucas Di Pentima [Wed, 24 Jul 2019 12:47:50 +0000 (09:47 -0300)]
14716: Adds legacy keep-web config loading.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Splits WebDAVCache config into its own struct to be assignable.
Lucas Di Pentima [Wed, 24 Jul 2019 12:46:07 +0000 (09:46 -0300)]
14716: Splits WebDAVCache config into its own struct to be assignable.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14716: Keep-web config params as part of the cluster config.
Lucas Di Pentima [Tue, 9 Jul 2019 15:38:06 +0000 (12:38 -0300)]
14716: Keep-web config params as part of the cluster config.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago12020: Fix test race.
Tom Clegg [Thu, 1 Aug 2019 15:45:20 +0000 (11:45 -0400)]
12020: Fix test race.

The previous fix still had a race bug: it assigned a truthy value to
PollClient._skip_old_events (thereby releasing the test from its wait
loop) before doing the logs().list() query to choose an event ID
threshold.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoec2 SecurityGroupIDs should be a StringSet refs #15467
Peter Amstutz [Thu, 1 Aug 2019 13:57:22 +0000 (09:57 -0400)]
ec2 SecurityGroupIDs should be a StringSet refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15467-legacy-config' refs #15467
Peter Amstutz [Wed, 31 Jul 2019 18:13:22 +0000 (14:13 -0400)]
Merge branch '15467-legacy-config' refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15356-composer-config' refs #15356
Peter Amstutz [Wed, 31 Jul 2019 17:53:10 +0000 (13:53 -0400)]
Merge branch '15356-composer-config' refs #15356

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15356: arvbox writes API_HOST to composer.yml
Peter Amstutz [Wed, 31 Jul 2019 17:42:08 +0000 (13:42 -0400)]
15356: arvbox writes API_HOST to composer.yml

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15356: Update Composer install doc
Peter Amstutz [Wed, 31 Jul 2019 17:40:47 +0000 (13:40 -0400)]
15356: Update Composer install doc

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Services only load their own legacy config files
Peter Amstutz [Wed, 31 Jul 2019 17:15:51 +0000 (13:15 -0400)]
15467: Services only load their own legacy config files

Services may be configured to run as different users, so (for example)
crunch-dispatch-slurm attempting to load another component's legacy
config results in permission error.  Don't do that.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14813: Fixes cluster config whitelist merge
Eric Biagiotti [Tue, 30 Jul 2019 16:26:47 +0000 (12:26 -0400)]
14813: Fixes cluster config whitelist merge

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14813: Adds ClusterID to config export
Eric Biagiotti [Thu, 25 Jul 2019 21:18:56 +0000 (17:18 -0400)]
14813: Adds ClusterID to config export

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '14813-config-cors'
Tom Clegg [Mon, 29 Jul 2019 20:59:14 +0000 (16:59 -0400)]
Merge branch '14813-config-cors'

refs #14813

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15467-config-fixups'
Peter Amstutz [Mon, 29 Jul 2019 19:37:32 +0000 (15:37 -0400)]
Merge branch '15467-config-fixups'

Also includes 14713-cds-new-config and 14717-ws-new-config

Updates run_test_server.py and run-tests.sh to use new config.yml

refs #14713
refs #14717
refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Test case where it ends in 'List' but isn't one
Peter Amstutz [Mon, 29 Jul 2019 19:35:59 +0000 (15:35 -0400)]
15467: Test case where it ends in 'List' but isn't one

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Better CONFIGSRC check, always write config.yml in start_services
Peter Amstutz [Mon, 29 Jul 2019 19:29:53 +0000 (15:29 -0400)]
15467: Better CONFIGSRC check, always write config.yml in start_services

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Test to check that reflection works as intended
Peter Amstutz [Mon, 29 Jul 2019 18:56:14 +0000 (14:56 -0400)]
15467: Test to check that reflection works as intended

Refactor a bit.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Introduce "StringSet"
Peter Amstutz [Fri, 26 Jul 2019 20:21:20 +0000 (16:21 -0400)]
15467: Introduce "StringSet"

Accepts an array of strings and converts to map for backwards
compatibility.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: check that array config items must end in 'List'
Peter Amstutz [Wed, 24 Jul 2019 14:12:07 +0000 (10:12 -0400)]
15467: check that array config items must end in 'List'

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: Migrate lists to hashes
Peter Amstutz [Tue, 23 Jul 2019 18:30:06 +0000 (14:30 -0400)]
15467: Migrate lists to hashes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15467: List to map changes (WIP)
Peter Amstutz [Tue, 23 Jul 2019 13:40:37 +0000 (09:40 -0400)]
15467: List to map changes (WIP)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Put setup_config back into install_env, with comments
Peter Amstutz [Mon, 29 Jul 2019 18:11:11 +0000 (14:11 -0400)]
14717: Put setup_config back into install_env, with comments

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Make CONFIGSRC mandatory for run-tests.sh
Peter Amstutz [Mon, 29 Jul 2019 15:38:13 +0000 (11:38 -0400)]
14717: Make CONFIGSRC mandatory for run-tests.sh

Must point to a directory containing a config.yml with a cluster id of
'zzzzz' and a PostgreSQL section.

Includes a few other cleanups.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoarvbox creates /var/lib/arvados/run_tests/config.yml
Peter Amstutz [Mon, 29 Jul 2019 15:34:03 +0000 (11:34 -0400)]
arvbox creates /var/lib/arvados/run_tests/config.yml

Set CONFIGSRC when running tests in arvbox

refs #14717

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoArvbox config doesn't need to set SupportedDockerImageFormats
Peter Amstutz [Tue, 23 Jul 2019 19:33:33 +0000 (15:33 -0400)]
Arvbox config doesn't need to set SupportedDockerImageFormats

Since it is already the default, refs #15467

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '12020-flaky-py-test'
Tom Clegg [Mon, 29 Jul 2019 14:53:37 +0000 (10:53 -0400)]
Merge branch '12020-flaky-py-test'

refs #12020

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15496-wb1-group-membership-admin'
Lucas Di Pentima [Fri, 26 Jul 2019 20:17:26 +0000 (17:17 -0300)]
Merge branch '15496-wb1-group-membership-admin'
Closes #15496

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14717: Write config file before starting test services.
Tom Clegg [Fri, 26 Jul 2019 20:00:31 +0000 (16:00 -0400)]
14717: Write config file before starting test services.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15496: Sets default attribute to 'x' instead of nil on check_box_tag.
Lucas Di Pentima [Fri, 26 Jul 2019 13:25:10 +0000 (10:25 -0300)]
15496: Sets default attribute to 'x' instead of nil on check_box_tag.

It seems that the tag helper on rails 5.0 ignores all attributes with
falsy values.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15467: Explicitly configure for IPv4
Peter Amstutz [Fri, 26 Jul 2019 01:30:34 +0000 (21:30 -0400)]
15467: Explicitly configure for IPv4

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Make sure tests use git http and keep-web URLs from config.yml
Peter Amstutz [Thu, 25 Jul 2019 20:41:03 +0000 (16:41 -0400)]
14717: Make sure tests use git http and keep-web URLs from config.yml

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: More test fixes. Configure correct websockets address.
Peter Amstutz [Thu, 25 Jul 2019 18:28:08 +0000 (14:28 -0400)]
14717: More test fixes.  Configure correct websockets address.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Fixups since tests now use config.yml
Peter Amstutz [Thu, 25 Jul 2019 13:41:09 +0000 (09:41 -0400)]
14717: Fixups since tests now use config.yml

Also add curl oneliner to submit the current git head to developer-run-tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14813: Add CORS headers to "get config" by moving it to arvados.API.
Tom Clegg [Wed, 24 Jul 2019 13:43:18 +0000 (09:43 -0400)]
14813: Add CORS headers to "get config" by moving it to arvados.API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14717: Delete obsolete functions from run_test_server.py
Peter Amstutz [Wed, 24 Jul 2019 20:25:06 +0000 (16:25 -0400)]
14717: Delete obsolete functions from run_test_server.py

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Refactor run_test_server.py and run_test.sh to use config.yml
Peter Amstutz [Wed, 24 Jul 2019 19:58:40 +0000 (15:58 -0400)]
14717: Refactor run_test_server.py and run_test.sh to use config.yml

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Remove LegacyComponentConfig behavior
Peter Amstutz [Tue, 23 Jul 2019 20:32:28 +0000 (16:32 -0400)]
14717: Remove LegacyComponentConfig behavior

run-tests.sh now requires a minimal config.yml with database information.

Remove database.yml from run-tests.sh

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Fix ws tests
Peter Amstutz [Mon, 22 Jul 2019 18:53:18 +0000 (14:53 -0400)]
14717: Fix ws tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Rename WebsocketKeepaliveTimeout to SendTimeout and add a comment
Peter Amstutz [Mon, 22 Jul 2019 18:14:39 +0000 (14:14 -0400)]
14717: Rename WebsocketKeepaliveTimeout to SendTimeout and add a comment

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Fix fallback behavior for component config vs main config
Peter Amstutz [Mon, 22 Jul 2019 17:59:36 +0000 (13:59 -0400)]
14717: Fix fallback behavior for component config vs main config

For backwards compatability, we need to be able to start with only a
component config and not the main config, and it is a fatal error if
it doesn't exist.

However, if there is a main config, and then it is okay if the
component config doesn't exist.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14717: Migrate websockets to new config
Peter Amstutz [Thu, 18 Jul 2019 20:25:50 +0000 (16:25 -0400)]
14717: Migrate websockets to new config

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14713: Fix handling default/missing keys, can't load default file
Peter Amstutz [Thu, 18 Jul 2019 14:25:44 +0000 (10:25 -0400)]
14713: Fix handling default/missing keys, can't load default file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14713: Migrate old crunch-dispatch-slurm config to new config
Peter Amstutz [Wed, 17 Jul 2019 20:54:01 +0000 (16:54 -0400)]
14713: Migrate old crunch-dispatch-slurm config to new config

Update code to use new config.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoFix test
Peter Amstutz [Mon, 15 Jul 2019 18:02:51 +0000 (14:02 -0400)]
Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoPins mithril version to fix CI pipeline.
Lucas Di Pentima [Wed, 24 Jul 2019 21:31:46 +0000 (18:31 -0300)]
Pins mithril version to fix CI pipeline.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago12020: Fix unreliable test.
Tom Clegg [Tue, 23 Jul 2019 18:02:21 +0000 (14:02 -0400)]
12020: Fix unreliable test.

test_subscribe_poll was failing occasionally due to a race (inserting
time.sleep(1) at the top of PollClient.run made the test fail
consistently).

The test now waits for PollClient to establish its _skip_old_events
filter, and then proceeds to create the event which PollClient is
expected to return.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '14287-federated-list'
Tom Clegg [Tue, 23 Jul 2019 17:24:01 +0000 (13:24 -0400)]
Merge branch '14287-federated-list'

refs #14287

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Reword filter restrictions.
Tom Clegg [Tue, 23 Jul 2019 15:27:05 +0000 (11:27 -0400)]
14287: Reword filter restrictions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Comment multi-dimensional map.
Tom Clegg [Mon, 22 Jul 2019 17:05:35 +0000 (13:05 -0400)]
14287: Comment multi-dimensional map.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Fix comment that looked too much like real code.
Tom Clegg [Mon, 22 Jul 2019 17:05:01 +0000 (13:05 -0400)]
14287: Fix comment that looked too much like real code.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Clarify use of separate variables in goroutine.
Tom Clegg [Mon, 22 Jul 2019 17:04:07 +0000 (13:04 -0400)]
14287: Clarify use of separate variables in goroutine.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Merge branch 'master'
Tom Clegg [Mon, 22 Jul 2019 15:25:03 +0000 (11:25 -0400)]
14287: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '14965-arv-mount-py-three'
Eric Biagiotti [Fri, 19 Jul 2019 14:56:36 +0000 (10:56 -0400)]
Merge branch '14965-arv-mount-py-three'

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Improves inode item view
Eric Biagiotti [Thu, 18 Jul 2019 19:54:31 +0000 (15:54 -0400)]
14965: Improves inode item view

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Optimizes dict iteration
Eric Biagiotti [Thu, 18 Jul 2019 19:28:05 +0000 (15:28 -0400)]
14965: Optimizes dict iteration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes assertRegexpMatch deprecation warning
Eric Biagiotti [Thu, 18 Jul 2019 18:52:45 +0000 (14:52 -0400)]
14965: Fixes assertRegexpMatch deprecation warning

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes resource warning when resetting run_test_server
Eric Biagiotti [Wed, 17 Jul 2019 20:29:13 +0000 (16:29 -0400)]
14965: Fixes resource warning when resetting run_test_server

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoRemove package build dockerfiles for debian8 and ubuntu1404.
Ward Vandewege [Wed, 17 Jul 2019 19:53:46 +0000 (15:53 -0400)]
Remove package build dockerfiles for debian8 and ubuntu1404.

refs #15454

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '15028-cwl11-doc-update' refs #15028
Peter Amstutz [Wed, 17 Jul 2019 17:32:06 +0000 (13:32 -0400)]
Merge branch '15028-cwl11-doc-update' refs #15028

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15028: Add link to extensions page
Peter Amstutz [Wed, 17 Jul 2019 15:58:34 +0000 (11:58 -0400)]
15028: Add link to extensions page

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15028: Reorganize CWL documentation some more
Peter Amstutz [Wed, 17 Jul 2019 15:53:22 +0000 (11:53 -0400)]
15028: Reorganize CWL documentation some more

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'master' into 14965-arv-mount-py-three
Eric Biagiotti [Wed, 17 Jul 2019 14:38:46 +0000 (10:38 -0400)]
Merge branch 'master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoFix arvbox no issue #
Peter Amstutz [Wed, 17 Jul 2019 14:35:29 +0000 (10:35 -0400)]
Fix arvbox no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15422-collections-prov-doc' refs #15422
Peter Amstutz [Tue, 16 Jul 2019 20:06:03 +0000 (16:06 -0400)]
Merge branch '15422-collections-prov-doc' refs #15422

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>