radhika [Fri, 12 May 2017 13:03:28 +0000 (09:03 -0400)]
10645: ApplicationController.helpers.object_for_dataclass not accessible from container_work_unit
radhika [Thu, 11 May 2017 16:55:26 +0000 (12:55 -0400)]
Merge branch 'master' into 10645-cr-display-perf
radhika [Thu, 11 May 2017 16:54:53 +0000 (12:54 -0400)]
closes #10645
Merge branch '10645-cr-mounts-display'
radhika [Thu, 11 May 2017 16:54:19 +0000 (12:54 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
Peter Amstutz [Thu, 11 May 2017 15:00:38 +0000 (11:00 -0400)]
Merge branch '11369-cwl-keepcache-ram' refs #11369
Peter Amstutz [Thu, 11 May 2017 14:19:32 +0000 (10:19 -0400)]
Merge branch '11626-crunch2-log-slurm-errors' closes #11626
Peter Amstutz [Thu, 11 May 2017 14:19:05 +0000 (10:19 -0400)]
11626: Fix log.Printf -> log.Print
radhika [Thu, 11 May 2017 12:54:59 +0000 (08:54 -0400)]
10645: display collection link with disposition. preload mount and command collections.
radhika [Thu, 11 May 2017 12:44:24 +0000 (08:44 -0400)]
10645: link_to locator with disposition
Ward Vandewege [Thu, 11 May 2017 01:10:02 +0000 (21:10 -0400)]
Be smarter about how we handle packages built in previous runs.
This commit fixes a bug: packages that were built but failed testing
will no longer be uploaded later, when a subsequent set of packages
passes the tests.
No issue #
radhika [Wed, 10 May 2017 23:53:01 +0000 (19:53 -0400)]
Merge branch 'master' into 10645-cr-display-perf
Ward Vandewege [Wed, 10 May 2017 21:09:06 +0000 (17:09 -0400)]
The Workbench package has a build-time dependency on tzdata for
Ubuntu1604, which is not included in the default upstream docker image.
Add it to our list of dependencies.
Also tweak Workbench package dependencies, no need to expliclitly list
g++ for CentOS7.
No issue #
Ward Vandewege [Wed, 10 May 2017 20:21:45 +0000 (16:21 -0400)]
Fix Workbench package dependency.
No issue #
Ward Vandewege [Wed, 10 May 2017 19:11:26 +0000 (15:11 -0400)]
Our API server and Workbench packages depend on 2 gems that compile
native objects, which require g++ to build them: event-machine and
therubyracer. For our debian-based distros, that package is not
necessarily installed, so we're adding it to the dependency list.
No issue #
Peter Amstutz [Wed, 10 May 2017 18:57:23 +0000 (14:57 -0400)]
11369: Add keep_cache to base RAM request.
Peter Amstutz [Wed, 10 May 2017 18:50:15 +0000 (14:50 -0400)]
Merge branch '10827-checker-cwltool-update' refs #10827
Peter Amstutz [Wed, 10 May 2017 15:16:18 +0000 (11:16 -0400)]
10827: Bump cwltool & schema salad dependency.
radhika [Wed, 10 May 2017 16:56:30 +0000 (12:56 -0400)]
closes #10112
Merge branch '10112-workflow-show'
radhika [Wed, 10 May 2017 16:55:21 +0000 (12:55 -0400)]
Merge branch 'master' into 10112-workflow-show
radhika [Wed, 10 May 2017 16:47:57 +0000 (12:47 -0400)]
10645: preload child crs and they containers
radhika [Wed, 10 May 2017 15:45:23 +0000 (11:45 -0400)]
10112: preload collections
Peter Amstutz [Wed, 10 May 2017 15:08:36 +0000 (11:08 -0400)]
10827: Add --validate, --print-dot and --enable-dev options (pass through to
existing cwltool functionality).
Tom Clegg [Wed, 10 May 2017 14:23:20 +0000 (10:23 -0400)]
Merge branch '11629-groups-contents-memory'
refs #11629
refs #11458
Tom Clegg [Wed, 10 May 2017 14:22:42 +0000 (10:22 -0400)]
11629: Fix ambiguous column reference.
Tom Clegg [Tue, 9 May 2017 20:37:47 +0000 (16:37 -0400)]
Merge branch '11634-bundler-cache'
closes #11634
Tom Clegg [Tue, 9 May 2017 20:33:31 +0000 (16:33 -0400)]
Merge branch '11629-groups-contents-memory'
closes #11629
Peter Amstutz [Fri, 5 May 2017 21:11:39 +0000 (17:11 -0400)]
11626: Log sbatch errors where the user can see them. Fix tests so there is no lingering goroutines.
Peter Amstutz [Tue, 9 May 2017 20:00:39 +0000 (16:00 -0400)]
Add libgnutls28-dev and python3-dev to install package list to satisfy
run-tests.sh dependencies. refs #11308
Tom Clegg [Tue, 9 May 2017 19:49:41 +0000 (15:49 -0400)]
Merge branch '11308-collection-keys'
refs #11308
Tom Clegg [Tue, 9 May 2017 19:31:44 +0000 (15:31 -0400)]
11308: Fix modes not tested in test case.
Tom Clegg [Tue, 9 May 2017 19:30:19 +0000 (15:30 -0400)]
11308: collection.keys() supports indexing for python2 callers.
radhika [Tue, 9 May 2017 15:29:02 +0000 (11:29 -0400)]
10112: use show_text_with_locators partial to display the various attributes of the definition
radhika [Tue, 9 May 2017 14:35:38 +0000 (10:35 -0400)]
Merge branch 'master' into 10112-workflow-show
radhika [Tue, 9 May 2017 14:31:06 +0000 (10:31 -0400)]
refs #10645
Merge branch '10645-cr-mounts-display'
radhika [Tue, 9 May 2017 14:28:23 +0000 (10:28 -0400)]
10645: added comment
radhika [Tue, 9 May 2017 11:35:16 +0000 (07:35 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
radhika [Tue, 9 May 2017 11:33:51 +0000 (07:33 -0400)]
10645: refactor the display of text with locators into a partial
radhika [Tue, 9 May 2017 01:58:07 +0000 (21:58 -0400)]
10645: collection links in command
radhika [Tue, 9 May 2017 01:21:02 +0000 (21:21 -0400)]
10645: regexp for keep_locator_in_json format
radhika [Mon, 8 May 2017 22:56:53 +0000 (18:56 -0400)]
10645: test update
radhika [Mon, 8 May 2017 22:43:54 +0000 (18:43 -0400)]
10645: display PDHs in command as clickable collections.
radhika [Mon, 8 May 2017 21:34:01 +0000 (17:34 -0400)]
10645: display keep locator in mounts as pdh/file_name
Tom Clegg [Mon, 8 May 2017 20:04:59 +0000 (16:04 -0400)]
Merge branch '11638-limit-conns'
closes #11638
Tom Clegg [Mon, 8 May 2017 20:04:01 +0000 (16:04 -0400)]
11638: Log a warning if Postgres pool size is unlimited.
Peter Amstutz [Mon, 8 May 2017 19:14:58 +0000 (15:14 -0400)]
10645: Tweak so that left column is col-md-6 (instead of col-md-5). Also tweak
full width part to be col-md-12. Move "priority" back to right hand column.
Tom Clegg [Mon, 8 May 2017 19:02:54 +0000 (15:02 -0400)]
11638: Add PostgresPool config option, and default application_name
Tom Clegg [Mon, 8 May 2017 18:17:46 +0000 (14:17 -0400)]
11629: Apply memory limits to job/pipeline "components" fields.
Tom Clegg [Mon, 8 May 2017 18:17:16 +0000 (14:17 -0400)]
11629: Fix items_available in groups#contents response.
radhika [Mon, 8 May 2017 17:59:35 +0000 (13:59 -0400)]
10645: L&F improvements
radhika [Mon, 8 May 2017 16:42:10 +0000 (12:42 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
Tom Clegg [Mon, 8 May 2017 16:06:00 +0000 (12:06 -0400)]
Merge branch '11308-python3'
refs #11308
Tom Clegg [Mon, 8 May 2017 16:05:31 +0000 (12:05 -0400)]
11308: Merge branch 'master' into 11308-python3
Tom Clegg [Mon, 8 May 2017 14:07:21 +0000 (10:07 -0400)]
11634: Prevent bundler from trying to use/update system gem cache.
Tom Clegg [Mon, 8 May 2017 13:59:35 +0000 (09:59 -0400)]
11634: Fix whitespace.
radhika [Mon, 8 May 2017 13:18:19 +0000 (09:18 -0400)]
10645: improve location regex usage
radhika [Fri, 5 May 2017 19:35:32 +0000 (15:35 -0400)]
10645: table width 100%
Tom Clegg [Fri, 5 May 2017 18:09:54 +0000 (14:09 -0400)]
11629: Limit database reads for all list responses, not just index.
radhika [Fri, 5 May 2017 19:30:46 +0000 (15:30 -0400)]
10112: add Definition tab to workflow page
radhika [Fri, 5 May 2017 17:38:21 +0000 (13:38 -0400)]
Merge branch 'master' into 10112-workflow-show
radhika [Fri, 5 May 2017 17:30:38 +0000 (13:30 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
radhika [Fri, 5 May 2017 17:29:59 +0000 (13:29 -0400)]
10645: corrections to test fixture
radhika [Fri, 5 May 2017 16:05:11 +0000 (12:05 -0400)]
closes #8019
Merge branch '8019-crunchrun-log-throttle'
radhika [Fri, 5 May 2017 16:02:36 +0000 (12:02 -0400)]
Merge branch 'master' into 8019-crunchrun-log-throttle
Peter Amstutz [Fri, 5 May 2017 15:54:13 +0000 (11:54 -0400)]
8019: Make flush channel buffered again (because we want to be able to do back-to-back flushes).
Fix "> crunchLogBytesPerEvent" to ">= crunchLogBytesPerEvent" for consistency.
radhika [Fri, 5 May 2017 15:12:48 +0000 (11:12 -0400)]
10645: small style updates
radhika [Fri, 5 May 2017 13:44:53 +0000 (09:44 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
radhika [Fri, 5 May 2017 01:32:37 +0000 (21:32 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
radhika [Fri, 5 May 2017 01:31:18 +0000 (21:31 -0400)]
10645: mount inputs display
Lucas Di Pentima [Thu, 4 May 2017 18:30:52 +0000 (15:30 -0300)]
Merge branch '10111-cr-prov-regression-fixes'
Refs #10111
Lucas Di Pentima [Thu, 4 May 2017 18:26:48 +0000 (15:26 -0300)]
10111: Flipped arrow between the cr and its childs cr.
radhika [Thu, 4 May 2017 17:32:34 +0000 (13:32 -0400)]
8019: uncomment the test statement
Lucas Di Pentima [Thu, 4 May 2017 17:17:54 +0000 (14:17 -0300)]
10111: Only add cr input collections by PDH.
Tom Clegg [Thu, 4 May 2017 17:02:40 +0000 (13:02 -0400)]
8019: Use tl.stopping channel instead of tl.flush to signal Close. Use unbuffered channel to signal flush.
Lucas Di Pentima [Thu, 4 May 2017 15:42:19 +0000 (12:42 -0300)]
10111: Skip log outputs from the provenance graph.
Container request's outputs are now added to the graph by their PDHs so that they connect with the CR childs inputs.
Tom Clegg [Thu, 4 May 2017 15:16:42 +0000 (11:16 -0400)]
11308: Merge branch 'master' into 11308-python3
Tom Clegg [Thu, 4 May 2017 15:09:41 +0000 (11:09 -0400)]
11308: Fix bytes vs. strings from recent merge.
Ward Vandewege [Thu, 4 May 2017 01:01:05 +0000 (21:01 -0400)]
We stopped building packages for Ubuntu 12.04, it is now officially EOL.
No issue #
radhika [Wed, 3 May 2017 21:56:38 +0000 (17:56 -0400)]
closes #11522
Merge branch '11522-remove-user-storage-report-page'
radhika [Wed, 3 May 2017 21:08:07 +0000 (17:08 -0400)]
Merge branch 'master' into 10112-workflow-show
radhika [Wed, 3 May 2017 20:55:40 +0000 (16:55 -0400)]
closes #11250
Merge branch '11250-container-state-display'
radhika [Wed, 3 May 2017 20:37:58 +0000 (16:37 -0400)]
11522: remove link to users storage page in users activity page.
radhika [Wed, 3 May 2017 20:20:08 +0000 (16:20 -0400)]
11250: when a container's priority is zero and in Queued state, show the state as "Cancelled"
radhika [Wed, 3 May 2017 18:37:38 +0000 (14:37 -0400)]
10645: rename file
radhika [Wed, 3 May 2017 18:24:28 +0000 (14:24 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
Peter Amstutz [Wed, 3 May 2017 18:20:08 +0000 (14:20 -0400)]
Merge branch '11369-log-sizes' refs #11369
radhika [Wed, 3 May 2017 18:15:05 +0000 (14:15 -0400)]
Merge branch 'master' into 10112-workflow-show
Peter Amstutz [Wed, 3 May 2017 16:59:34 +0000 (12:59 -0400)]
Merge branch '11469-volume-tmp' refs #11469
Peter Amstutz [Wed, 3 May 2017 16:48:43 +0000 (12:48 -0400)]
Merge branch '11369-dispatch-mem' refs #11369
Peter Amstutz [Wed, 3 May 2017 16:48:03 +0000 (12:48 -0400)]
Merge branch '11369-cwl-crunch2-capacity' refs #11369
Peter Amstutz [Wed, 3 May 2017 14:49:04 +0000 (10:49 -0400)]
11469: Add test for changed tmp mounting behavior.
Tom Clegg [Wed, 3 May 2017 14:20:52 +0000 (10:20 -0400)]
Merge branch '11606-rails4-no-munge'
closes #11606
Tom Clegg [Wed, 3 May 2017 14:20:35 +0000 (10:20 -0400)]
11308: Stop test suite if api etc. cannot be started.
Peter Amstutz [Wed, 3 May 2017 13:52:41 +0000 (09:52 -0400)]
11469: All {kind: tmp} mounts set up under host tempdir, don't try to use
Docker volumes.
Peter Amstutz [Wed, 3 May 2017 02:53:28 +0000 (22:53 -0400)]
11369: Fix tests. Tweak test fixture to include a mounts entry with capacity.
Peter Amstutz [Wed, 3 May 2017 01:26:55 +0000 (21:26 -0400)]
11369: Log node sizes at startup. Fix setting of scratch disk size.
radhika [Wed, 3 May 2017 04:24:41 +0000 (00:24 -0400)]
10645: add test for container_request display with input mounts
Peter Amstutz [Wed, 3 May 2017 03:06:28 +0000 (23:06 -0400)]
11369: Containers API: Add capacity to tmp and output mounts. Also support {outputDirType: keep_output_dir} of RuntimeConstraints.
Peter Amstutz [Wed, 3 May 2017 02:21:36 +0000 (22:21 -0400)]
11369: RAM request includes keep cache RAM. Add request for temp disk.
radhika [Wed, 3 May 2017 01:05:25 +0000 (21:05 -0400)]
Merge branch 'master' into 10645-cr-mounts-display
radhika [Tue, 2 May 2017 20:03:28 +0000 (16:03 -0400)]
8019: need to check and write log if things are closing down
projects / arvados.git / log