Tom Morris [Thu, 5 Jan 2017 01:28:15 +0000 (20:28 -0500)]
10472: add latent support for rolled up stats
Tom Morris [Wed, 4 Jan 2017 23:34:09 +0000 (18:34 -0500)]
10472: Handle jobs with components/subjobs
Tom Clegg [Wed, 4 Jan 2017 03:47:14 +0000 (22:47 -0500)]
Fix run-tests.sh --skip option.
No issue #
Tom Clegg [Wed, 4 Jan 2017 01:57:40 +0000 (20:57 -0500)]
Merge branch '8345-revert-llfuse-to-0.41.1'
refs #8345
Tom Clegg [Tue, 3 Jan 2017 20:05:20 +0000 (15:05 -0500)]
8345: Revert llfuse to 0.41.1.
Tom Clegg [Tue, 3 Jan 2017 15:50:41 +0000 (10:50 -0500)]
8345: Compatibility with llfuse 0.41 and 1.x.
Tom Clegg [Sun, 1 Jan 2017 01:38:02 +0000 (20:38 -0500)]
8345: Add run-tests.sh --repeat option.
Tom Clegg [Tue, 3 Jan 2017 21:40:11 +0000 (16:40 -0500)]
Merge branch '10795-get-zero-block'
refs #10795
Tom Clegg [Tue, 3 Jan 2017 21:35:58 +0000 (16:35 -0500)]
10795: For md5(""), skip the request and just return an empty reader.
Tom Clegg [Tue, 3 Jan 2017 21:33:19 +0000 (16:33 -0500)]
10795: Remove test-selector code (use -check.f instead).
Tom Clegg [Tue, 3 Jan 2017 20:50:35 +0000 (15:50 -0500)]
Merge branch '10682-azure-stats'
refs #10682
Tom Clegg [Tue, 3 Jan 2017 20:49:46 +0000 (15:49 -0500)]
10682: Add GetMetadataOps and GetPropertiesOps to Azure backend stats.
Tom Clegg [Tue, 3 Jan 2017 15:34:27 +0000 (10:34 -0500)]
10682: Add comments to statsTicker.
Tom Clegg [Mon, 2 Jan 2017 19:54:43 +0000 (14:54 -0500)]
10682: Track Azure backend errors by type.
Tom Clegg [Mon, 2 Jan 2017 18:57:31 +0000 (13:57 -0500)]
10682: Add backend stats for Azure volumes.
Tom Clegg [Mon, 2 Jan 2017 20:13:45 +0000 (15:13 -0500)]
10682: Avoid invoking special "test mode" behavior in Azure SDK.
Restores compatibility with latest azure-sdk-for-go.
refs #10682
Ward Vandewege [Sat, 31 Dec 2016 21:35:38 +0000 (16:35 -0500)]
run-build-packages-all-targets.sh: Make sure to build all packages once not twice.
No issue #
Ward Vandewege [Sat, 31 Dec 2016 21:34:44 +0000 (16:34 -0500)]
Merge branch '10786-remove-centos6-from-build-directory'
closes #10786
Ward Vandewege [Sat, 31 Dec 2016 20:27:51 +0000 (15:27 -0500)]
Remove additional CentOS6 files.
refs #10786
Ward Vandewege [Thu, 29 Dec 2016 15:33:29 +0000 (10:33 -0500)]
Remove CentOS6 support from the build directory.
refs #10786
Ward Vandewege [Sat, 31 Dec 2016 20:20:11 +0000 (15:20 -0500)]
Merge branch 'master' into 10786-remove-centos6-from-build-directory
Tom Clegg [Fri, 30 Dec 2016 22:06:55 +0000 (17:06 -0500)]
Merge branch '10467-client-disconnect' closes #10467
Peter Amstutz [Fri, 30 Dec 2016 21:12:35 +0000 (16:12 -0500)]
Merge branch '10790-crunch-job-log-timeout' refs #10790
Peter Amstutz [Fri, 30 Dec 2016 20:48:23 +0000 (15:48 -0500)]
10790: Increase timeout reading from arv-put.
Tom Clegg [Fri, 30 Dec 2016 20:17:02 +0000 (15:17 -0500)]
Merge branch '10538-trash-delete' closes #10538
Tom Clegg [Fri, 30 Dec 2016 20:16:31 +0000 (15:16 -0500)]
10538: Mention fixture names in comments when not using fixture finders.
Tom Clegg [Fri, 30 Dec 2016 19:58:00 +0000 (14:58 -0500)]
10467: Use BlockReader and BlockWriter interfaces instead of passing methods to get/putWithPipe.
Tom Clegg [Fri, 30 Dec 2016 19:41:12 +0000 (14:41 -0500)]
10467: Remove debug printfs.
Tom Clegg [Fri, 30 Dec 2016 19:39:52 +0000 (14:39 -0500)]
10467: Remove unneeded errorReadCloser, make getter/putter interfaces more like WriterTo/ReaderFrom.
Peter Amstutz [Fri, 30 Dec 2016 19:12:27 +0000 (14:12 -0500)]
Merge branch '10497-cwl-job-logs' closes #10497
Peter Amstutz [Fri, 30 Dec 2016 19:12:16 +0000 (14:12 -0500)]
Merge branch '10722-cwl-subworkflow' closes #10722
Tom Clegg [Fri, 30 Dec 2016 18:39:07 +0000 (13:39 -0500)]
10538: Clarify error message.
Tom Clegg [Fri, 30 Dec 2016 18:38:26 +0000 (13:38 -0500)]
10538: Clear up default_trash_interval logic
Tom Clegg [Fri, 30 Dec 2016 18:37:41 +0000 (13:37 -0500)]
10538: Fix misspelled IsTrash -> IsTrashed
Peter Amstutz [Fri, 30 Dec 2016 18:34:27 +0000 (13:34 -0500)]
10497: Replace \d\d\d\d with \d{4}
Tom Clegg [Fri, 30 Dec 2016 15:28:38 +0000 (10:28 -0500)]
8345: Build python27-python-contextlib2 for centos7.
refs #8345
Tom Clegg [Fri, 30 Dec 2016 00:52:10 +0000 (19:52 -0500)]
Fix version# of centos7 llfuse backport.
No issue #
Tom Clegg [Thu, 29 Dec 2016 19:57:45 +0000 (14:57 -0500)]
Bring back ca-certificates to package-testing images.
No issue #
Tom Clegg [Thu, 29 Dec 2016 16:03:59 +0000 (11:03 -0500)]
Merge branch '8345-llfuse-1.0' closes #8345
Tom Clegg [Thu, 29 Dec 2016 16:02:34 +0000 (11:02 -0500)]
Merge branch 'master' into 8345-llfuse-1.0
Conflicts:
build/package-test-dockerfiles/debian7/Dockerfile
build/run-build-packages.sh
Tom Clegg [Thu, 29 Dec 2016 15:45:55 +0000 (10:45 -0500)]
Obey --only-build arg in "test packages" mode.
Tom Clegg [Thu, 29 Dec 2016 15:37:27 +0000 (10:37 -0500)]
Update package-test images to ruby 2.3
Ward Vandewege [Thu, 29 Dec 2016 13:36:37 +0000 (08:36 -0500)]
Merge branch '10785-remove-debian7'
closes #10785
Tom Clegg [Thu, 29 Dec 2016 07:47:40 +0000 (02:47 -0500)]
8345: Build python27-python-contextlib2 for centos6.
Tom Clegg [Mon, 18 Apr 2016 16:40:21 +0000 (12:40 -0400)]
8345: Upgrade to llfuse 1.0
Tom Clegg [Thu, 10 Mar 2016 20:04:10 +0000 (15:04 -0500)]
8345: Revert change to getattr() @catch_exceptions setup.
Tom Clegg [Wed, 9 Mar 2016 18:50:41 +0000 (13:50 -0500)]
8345: Fix dirent timestamps.
Tom Clegg [Tue, 8 Mar 2016 21:40:22 +0000 (16:40 -0500)]
8345: Pin llfuse to <1.0
Tom Clegg [Mon, 7 Mar 2016 20:26:14 +0000 (15:26 -0500)]
8345: fix whitespace
Joshua Randall [Wed, 10 Feb 2016 12:04:25 +0000 (12:04 +0000)]
updates test_mount to use st_mtime_ns instead of st_mtime
Joshua Randall [Tue, 9 Feb 2016 21:41:40 +0000 (21:41 +0000)]
updates setattr for llfuse-python 0.42
Joshua Randall [Fri, 5 Feb 2016 18:37:17 +0000 (18:37 +0000)]
adds backports specific to centos6
Joshua Randall [Fri, 5 Feb 2016 11:45:10 +0000 (11:45 +0000)]
adds missing fix for llfuse 0.42+
llfuse.capi._notify_queue => llfuse._notify_queue
Joshua Randall [Wed, 3 Feb 2016 11:48:55 +0000 (11:48 +0000)]
updates llfuse requirement and API to >=0.42
Ward Vandewege [Wed, 28 Dec 2016 23:14:56 +0000 (18:14 -0500)]
Remove debian7 from the build directory.
refs #10785
Tom Clegg [Wed, 28 Dec 2016 21:44:32 +0000 (16:44 -0500)]
10467: local directory driver: skip disk IO if client disconnects before lock is acquired.
Peter Amstutz [Wed, 28 Dec 2016 20:50:20 +0000 (15:50 -0500)]
10722: Issue better error when 'id' is missing.
Peter Amstutz [Wed, 28 Dec 2016 18:24:11 +0000 (13:24 -0500)]
10497: Add logname (crunch-run, stdout, stderr) to container log tail
Peter Amstutz [Wed, 28 Dec 2016 18:07:18 +0000 (13:07 -0500)]
10497: Filter crunchstat lines to make more space for useful logs.
Peter Amstutz [Wed, 28 Dec 2016 16:13:56 +0000 (11:13 -0500)]
10497: Increase number of log lines shown by runner. Turn off 'debug' mode on crunch script.
Peter Amstutz [Wed, 28 Dec 2016 15:55:46 +0000 (10:55 -0500)]
10497: Don't prefix every line of log from job.
Peter Amstutz [Wed, 28 Dec 2016 15:31:49 +0000 (10:31 -0500)]
10497: Add --no-log-timestamps to eliminate redundant timestamps when running in Arvados job or container.
Conflicts:
sdk/cwl/setup.py
Peter Amstutz [Mon, 19 Dec 2016 21:26:29 +0000 (16:26 -0500)]
10497: Print last 25 lines of log when job fails.
Peter Amstutz [Wed, 28 Dec 2016 17:39:59 +0000 (12:39 -0500)]
Merge branch '10782-container-retry' closes #10782
Peter Amstutz [Wed, 28 Dec 2016 17:05:07 +0000 (12:05 -0500)]
10782: Bugfix, on retry only update container_uuid on container requests
associated with the container in the first place. Update container retry test.
Peter Amstutz [Wed, 28 Dec 2016 15:54:37 +0000 (10:54 -0500)]
Fix crunch script to construct toolpath before it is turned into a File object. refs #10497
Peter Amstutz [Wed, 28 Dec 2016 15:30:24 +0000 (10:30 -0500)]
Merge branch '10497-cwl-better-errors' refs #10497
Peter Amstutz [Wed, 28 Dec 2016 15:29:30 +0000 (10:29 -0500)]
Arvbox common.sh script won't fail if bundler gem not cached on disk.
Don't push docker images if build fails. no issue #
Peter Amstutz [Wed, 28 Dec 2016 15:05:17 +0000 (10:05 -0500)]
10497: Add pathlib2 to backports
Peter Amstutz [Tue, 27 Dec 2016 22:06:17 +0000 (17:06 -0500)]
10497: Pop cwl:tool parameter from job order
Peter Amstutz [Tue, 27 Dec 2016 20:05:48 +0000 (15:05 -0500)]
10497: Update ruamel.yaml, schema salad, and cwltool
Peter Amstutz [Wed, 21 Dec 2016 15:34:53 +0000 (10:34 -0500)]
10497: Use SourceLine in context manager in PathMapper. Remove unnecessary import.
Peter Amstutz [Mon, 19 Dec 2016 20:33:40 +0000 (15:33 -0500)]
10497: Improve up front feature checking and error reporting.
Peter Amstutz [Mon, 19 Dec 2016 18:39:46 +0000 (13:39 -0500)]
10497: Add source line reporting to errors and fix tests to work with CommentedMap/Seq behavior.
Peter Amstutz [Fri, 16 Dec 2016 21:34:59 +0000 (16:34 -0500)]
10497: Update cwltool & schema salad versions.
Tom Clegg [Wed, 28 Dec 2016 15:21:25 +0000 (10:21 -0500)]
Load keep-balance config from default location if -config arg not given.
No issue #
Peter Amstutz [Tue, 13 Dec 2016 14:36:47 +0000 (09:36 -0500)]
Arvbox use --local to install bundler if gem is available, also recognize .tar.bz2 in
pip cache. no issue #
Tom Clegg [Wed, 28 Dec 2016 05:52:29 +0000 (00:52 -0500)]
Fix use of unquoted user input in regexp.
Tom Clegg [Wed, 28 Dec 2016 05:26:42 +0000 (00:26 -0500)]
10538: Add /arvados/v1/collections/{uuid}/trash endpoint.
Tom Clegg [Tue, 27 Dec 2016 19:01:11 +0000 (14:01 -0500)]
10538: Use include_trash in keep-balance to avoid premature block deletes.
Tom Clegg [Tue, 27 Dec 2016 18:57:53 +0000 (13:57 -0500)]
10538: Exchange expires_at for new trash_at and delete_at columns.
Tom Clegg [Tue, 27 Dec 2016 20:30:03 +0000 (15:30 -0500)]
Close database connections when ending threads.
Tom Clegg [Tue, 27 Dec 2016 16:16:18 +0000 (11:16 -0500)]
Merge branch '10273-check-superuser-token-scope' refs #10273
Tom Clegg [Thu, 20 Oct 2016 15:26:23 +0000 (11:26 -0400)]
10273: Check scope=[all] when looking for an existing superuser token.
Ward Vandewege [Fri, 23 Dec 2016 02:37:42 +0000 (21:37 -0500)]
Add a mechanism to the arvados-api Gemfile to load 'plugin' gems.
refs #9982
Tom Morris [Thu, 22 Dec 2016 20:34:24 +0000 (15:34 -0500)]
Merge branch '10778-expand-job-bug' - Fixes #10778
Tom Clegg [Thu, 22 Dec 2016 19:43:28 +0000 (14:43 -0500)]
Ensure column information is up-to-date before creating full text indexes. refs #10028
Tom Morris [Thu, 22 Dec 2016 19:33:29 +0000 (14:33 -0500)]
Ignore editor backup files & .DS_Store
no issue #
Tom Morris [Thu, 22 Dec 2016 18:55:15 +0000 (13:55 -0500)]
Fix pipeline instance expand - fixes #10778
Tom Morris [Thu, 22 Dec 2016 18:48:00 +0000 (13:48 -0500)]
Switch to 2 space indent - no functional changes
Tom Clegg [Thu, 22 Dec 2016 15:14:10 +0000 (10:14 -0500)]
Merge branch '10585-crunchstat-lost-parent' refs #10585
Tom Clegg [Thu, 22 Dec 2016 06:32:20 +0000 (01:32 -0500)]
10585: Clean up defaults and error checks; release ticker when finished.
Lucas Di Pentima [Wed, 21 Dec 2016 18:22:23 +0000 (15:22 -0300)]
Merge branch '10671-pipeline-instance-finish-time'
Closes #10671
Lucas Di Pentima [Wed, 21 Dec 2016 17:28:41 +0000 (14:28 -0300)]
10671: Merge branch 'master' into 10671-pipeline-instance-finish-time
Lucas Di Pentima [Wed, 21 Dec 2016 17:26:25 +0000 (14:26 -0300)]
10671: Changed default assigments to be before validation. Also make sure started_at is not nil when pipeline instance is finished.
Tom Clegg [Wed, 21 Dec 2016 15:38:51 +0000 (10:38 -0500)]
Merge branch '10467-client-disconnect' refs #10467
Peter Amstutz [Wed, 21 Dec 2016 15:11:56 +0000 (10:11 -0500)]
Merge branch '10497-crunchrun-logs' refs #10497
Tom Clegg [Wed, 21 Dec 2016 15:08:44 +0000 (10:08 -0500)]
10467: Merge branch 'master' into 10467-client-disconnect
Peter Amstutz [Tue, 20 Dec 2016 16:10:56 +0000 (11:10 -0500)]
10497: crunch-run records logs even when container is cancelled.
Lucas Di Pentima [Mon, 19 Dec 2016 20:58:13 +0000 (17:58 -0300)]
10671: Merge branch 'master' into 10671-pipeline-instance-finish-time
projects / arvados.git / log