Radhika Chippada [Fri, 9 Jan 2015 21:43:35 +0000 (16:43 -0500)]
4926: add "upload using workbench"
Tom Clegg [Thu, 8 Jan 2015 21:04:01 +0000 (16:04 -0500)]
Merge branch '3408-go-sdk-api-errors' refs #3408
Tom Clegg [Thu, 8 Jan 2015 20:50:42 +0000 (15:50 -0500)]
3408: Propagate API error messages to caller.
Peter Amstutz [Thu, 8 Jan 2015 18:49:05 +0000 (13:49 -0500)]
Merge branch '4312-crunch-report-sdk-version' closes #4312
Peter Amstutz [Thu, 8 Jan 2015 18:48:42 +0000 (13:48 -0500)]
4312: Remove redundant parenthesis.
Peter Amstutz [Wed, 7 Jan 2015 21:32:23 +0000 (16:32 -0500)]
4312: Fix dpkg search to use dpkg-query.
Peter Amstutz [Wed, 7 Jan 2015 19:51:16 +0000 (14:51 -0500)]
4312: Call virtualenv pip directly instead of using activate.
Peter Amstutz [Wed, 7 Jan 2015 19:38:41 +0000 (14:38 -0500)]
4312: Use "install" phase of bootstrap script to report the installed versions
of any arvados pip or debian packages. Like virtualenv logic, only reports for
task 0 (since every task starts the same image).
Tom Clegg [Wed, 7 Jan 2015 17:14:42 +0000 (12:14 -0500)]
Merge branch '3021-more-phantomjs' refs #3021
Tom Clegg [Wed, 7 Jan 2015 17:13:51 +0000 (12:13 -0500)]
3021: Use selenium to land on #Advanced tab.
Tom Clegg [Wed, 7 Jan 2015 17:14:21 +0000 (12:14 -0500)]
3021: Merge branch 'master' into 3021-more-phantomjs
Tom Clegg [Wed, 7 Jan 2015 15:01:32 +0000 (10:01 -0500)]
3021: Add random part to magic string.
Tim Pierce [Wed, 7 Jan 2015 14:46:10 +0000 (09:46 -0500)]
Merge branch '4598-crunch-failure-stats'
Fixes #4598.
Tim Pierce [Wed, 7 Jan 2015 14:45:06 +0000 (09:45 -0500)]
4598: actually rename this time
PEBCAK failure led to deleting the file without staging the new one. d'oh.
Tim Pierce [Wed, 7 Jan 2015 14:43:56 +0000 (09:43 -0500)]
4598: rename script
Renamed crunch-failure-report.py to crunch_failure_report.py to permit
importing (and eventually testing).
Tom Clegg [Tue, 6 Jan 2015 22:48:42 +0000 (17:48 -0500)]
3021: Wait for shown.bs.modal before trying to click butttons in the modal.
Remove a stray Headless.new.start.
Tim Pierce [Tue, 6 Jan 2015 21:21:10 +0000 (21:21 +0000)]
4598: catch exceptions more aggressively when looking up pipeline names
Added exception handling for cases where:
* job is not recorded as belonging to any pipeline instance
* pipeline instance has no pipeline template
Peter Amstutz [Tue, 6 Jan 2015 19:06:28 +0000 (14:06 -0500)]
Merge branch '4570-multi-auth-method' refs #4570
Tom Clegg [Tue, 6 Jan 2015 18:52:16 +0000 (13:52 -0500)]
3021: Fix assertion broken in
9c10212.
Peter Amstutz [Tue, 6 Jan 2015 18:24:06 +0000 (13:24 -0500)]
4570: Fix tabs, CSS on log in button.
Tom Clegg [Tue, 6 Jan 2015 17:26:49 +0000 (12:26 -0500)]
3021: Wait for dialog to close before asserting page transition.
Brett Smith [Tue, 6 Jan 2015 17:12:27 +0000 (12:12 -0500)]
Merge branch '4836-first-tab-load-wip'
Closes #4836, #4870.
Brett Smith [Fri, 19 Dec 2014 22:40:13 +0000 (17:40 -0500)]
4836: Trigger Workbench infinite scroll load on tab show.
If an infinite scroller is in the first tab of a show page, but the
user is going to a different tab, we'll queue up the first event
to load data for the container, but when it fires the container won't
be visible so it will decline to load anything. Then you can only get
data to load if you resize the window.
Fire a scroll event when a new tab is shown, to spur the infinite
scroller to load data as appropriate.
Tim Pierce [Tue, 6 Jan 2015 16:03:10 +0000 (11:03 -0500)]
4598: account for queued and cancelled jobs, fix sorting
Per code review:
* Updated report to include job states "Cancelled" and "Queued" as well
as Failed, Running and Complete, and to take these into account when
calculating job counts.
* Fixed sorting for failure classes.
Peter Amstutz [Tue, 6 Jan 2015 13:45:08 +0000 (08:45 -0500)]
Merge branch 'master' into 4570-multi-auth-method
Peter Amstutz [Tue, 6 Jan 2015 13:44:49 +0000 (08:44 -0500)]
4570: Revert to links on log in page instead of form. Fixup documentation to
to describe a production setup.
Tom Clegg [Tue, 6 Jan 2015 06:02:06 +0000 (01:02 -0500)]
3021: Use headless helper in performance and diagnostics tests, too.
Tom Clegg [Tue, 6 Jan 2015 05:59:02 +0000 (00:59 -0500)]
3021: 4399: Refactor headless stuff into a module. Clear up new/start/stop use.
* Create one Headless per test process, when encountering the first
test case that needs one.
* Call headless.start & stop exactly once for each test case that uses
it.
Tim Pierce [Mon, 5 Jan 2015 19:22:47 +0000 (14:22 -0500)]
4598: formatting and calculation fixes (code review)
Incorporating code review feedback from #4598-13.
Bugs fixed:
* Correct counting and percentage calculation of job failures.
** Jobs were getting categorized as both "unknown" and as a specific failure type.
* Crashes fixed: should not raise any unhandled exceptions.
Formatting fixes:
* Itemized failures are now sorted in descending order by failure type
* Better horizontal alignment
* Modified formatting to account for updated description.
Peter Amstutz [Mon, 5 Jan 2015 16:37:54 +0000 (11:37 -0500)]
Merge branch '4869-keepalive' refs #4869
Peter Amstutz [Mon, 5 Jan 2015 15:17:42 +0000 (10:17 -0500)]
4869: Client.Timeout and Client.Transport are now correctly set in
DiscoverKeepServers(). Improved comments.
Tom Clegg [Sun, 4 Jan 2015 08:17:45 +0000 (03:17 -0500)]
3021: Clean up headless/selenium/javascript choices.
Tom Clegg [Sat, 3 Jan 2015 06:52:34 +0000 (01:52 -0500)]
3021: Skip angular init if angular is not loaded.
Tom Clegg [Sat, 3 Jan 2015 03:20:59 +0000 (22:20 -0500)]
3021: Silence "invalid regexp" errors while typing regexp; put input in "has-error" state instead.
Tom Clegg [Fri, 2 Jan 2015 22:38:34 +0000 (17:38 -0500)]
3021: 4399: Convert some tests from selenium to phantomjs. Restart Headless less.
Tom Clegg [Wed, 31 Dec 2014 21:33:57 +0000 (16:33 -0500)]
Remove cruft. No issue #
Ward Vandewege [Wed, 31 Dec 2014 15:01:59 +0000 (10:01 -0500)]
Merge branch '4887-invalidate-duplicate-ip-on-old-compute-nodes'
closes #4887
Ward Vandewege [Wed, 31 Dec 2014 15:01:30 +0000 (10:01 -0500)]
Merge branch 'master' into 4887-invalidate-duplicate-ip-on-old-compute-nodes
Ward Vandewege [Wed, 31 Dec 2014 15:00:21 +0000 (10:00 -0500)]
Address review comments:
* change stale_conflicting_nodes to a local variable
* minor performance optimization: add an additional check for ip_address being nil
refs #4887
Tim Pierce [Tue, 30 Dec 2014 21:50:04 +0000 (16:50 -0500)]
Merge branch '4877-dont-delete-stdout'
Fixes #4877
Tim Pierce [Tue, 30 Dec 2014 21:45:42 +0000 (16:45 -0500)]
4877: don't delete /dev/stdout
Fixed the filename check before trying to delete /dev/stdout.
Tim Pierce [Tue, 30 Dec 2014 21:07:02 +0000 (16:07 -0500)]
4598: added failure types and short names
Added the sys/docker failure type. Failures now reported by short
failure name rather than by regex.
Tim Pierce [Tue, 30 Dec 2014 19:48:59 +0000 (14:48 -0500)]
4598: remove more dev/debugging features.
Tim Pierce [Tue, 30 Dec 2014 19:47:31 +0000 (14:47 -0500)]
4598: take out some debug reporting and --match option
Remove debugging features.
Tim Pierce [Tue, 30 Dec 2014 19:42:28 +0000 (14:42 -0500)]
4598: fetch logs from Keep, more failure reporting
Per standup review: fetch logs with a CollectionReader on the log
collection uuid, rather than fetching log records from the API server.
Perform full failure reporting including job URL details.
Ward Vandewege [Tue, 30 Dec 2014 19:31:53 +0000 (14:31 -0500)]
Detect stale compute node records with the same IP address as the new
node on its first ping. Clear the ip_address field on the stale nodes.
Refs #4887
Ward Vandewege [Tue, 30 Dec 2014 18:28:57 +0000 (13:28 -0500)]
Cleanups:
* Remove old commented out code
* Remove superfluous test for presence of file on disk
refs #4887
Tim Pierce [Tue, 30 Dec 2014 16:00:51 +0000 (11:00 -0500)]
4598: bug fixes, added full stats collection
Added code to report full stats on failed, successful, and incomplete
jobs. Perform basic reporting on failed job causes (not yet working).
Peter Amstutz [Tue, 30 Dec 2014 15:39:50 +0000 (10:39 -0500)]
4869: Enable TCP keepalive and adjust connection timeouts to Keep client.
Tom Clegg [Mon, 29 Dec 2014 22:02:01 +0000 (17:02 -0500)]
Fix whitespace, cf. gofmt. refs #4875
Tom Clegg [Mon, 29 Dec 2014 21:59:35 +0000 (16:59 -0500)]
Merge branch '4875-keepclient-test-race' closes #4875
Tom Clegg [Mon, 29 Dec 2014 21:29:17 +0000 (16:29 -0500)]
4875: Merge branch 'master' into 4875-keepclient-test-race
Conflicts:
sdk/go/keepclient/keepclient_test.go
Tom Clegg [Mon, 29 Dec 2014 20:45:30 +0000 (15:45 -0500)]
Fix version strings to comply with PEP-440. No issue #
Tom Clegg [Mon, 29 Dec 2014 20:12:46 +0000 (15:12 -0500)]
Merge branch '4523-owner_uuid-index' refs #4523
Peter Amstutz [Mon, 29 Dec 2014 20:11:05 +0000 (15:11 -0500)]
Merge branch '4869-keepproxy' refs #4869
Peter Amstutz [Mon, 29 Dec 2014 19:37:13 +0000 (14:37 -0500)]
4869: Strip all newlines from error responses, not just leading and trailing
whitespace.
Tom Clegg [Mon, 29 Dec 2014 18:58:58 +0000 (13:58 -0500)]
4523: Dry up migration and test cases.
Peter Amstutz [Mon, 29 Dec 2014 18:51:20 +0000 (13:51 -0500)]
4869: Based on Go documentation, don't set a body ReadCloser on the request
when body length is 0.
Tom Clegg [Mon, 29 Dec 2014 17:45:02 +0000 (12:45 -0500)]
4523: Fix column order to match migration order.
Tom Clegg [Mon, 29 Dec 2014 17:44:35 +0000 (12:44 -0500)]
4523: Remove dev-only checks in migration.
Peter Amstutz [Mon, 29 Dec 2014 17:32:38 +0000 (12:32 -0500)]
4869: Correctly handle zero-length blocks in Keep client/Keep proxy. Remove
X-Block-Size. Choose default request timeout based on if client is talking to
a proxy or not. Use double quotes in logging. Rename "tag" to "requestId".
Tom Clegg [Mon, 29 Dec 2014 17:28:44 +0000 (12:28 -0500)]
4523: Fix whitespace.
Peter Amstutz [Mon, 29 Dec 2014 14:23:45 +0000 (09:23 -0500)]
4869: Keepstore now returns Content-Length headers, and logs the error message
sent to the client on errors.
Peter Amstutz [Mon, 29 Dec 2014 14:09:13 +0000 (09:09 -0500)]
4869: KeepClient now has a default timeout per block request (10 minutes). In
keepproxy, the timeout is set to 20 seconds per block. Also rearranged some
keepclient and keepproxy logging to provide better information.
Tom Clegg [Tue, 23 Dec 2014 20:51:49 +0000 (15:51 -0500)]
Merge branch '4754-performance-TC' closes #4754
Ward Vandewege [Tue, 23 Dec 2014 20:47:49 +0000 (15:47 -0500)]
Merge branch '4844-stricter-min-nodes-wip'
refs #4844
Ward Vandewege [Tue, 23 Dec 2014 20:47:23 +0000 (15:47 -0500)]
Merge branch 'master' into 4844-stricter-min-nodes-wip
Ward Vandewege [Tue, 23 Dec 2014 20:44:10 +0000 (15:44 -0500)]
Skip two more CLI tests that need a running API server.
refs #4156
Peter Amstutz [Tue, 23 Dec 2014 14:55:05 +0000 (09:55 -0500)]
4869: Improve logging
Tom Clegg [Sun, 21 Dec 2014 00:28:56 +0000 (19:28 -0500)]
4875: Let the OS choose port numbers for fake servers.
Fixes a race condition where test case N+1 can't listen on port 2990
because test case N hasn't shut down its listener.
Also removes the artificial acceptance requirement that nobody else on
the testing host is using the arbitrarily assigned port range
2990..299x.
Incidental changes:
* rename RunBogusKeepServer to RunFakeKeepServer (to match
RunSomeFakeKeepServers and fix the misleading implication that the
resulting server does something bogus).
* return a KeepServer object from RunFakeKeepServer (for better parity
with RunSomeFakeKeepServers).
Tom Clegg [Sat, 20 Dec 2014 23:49:53 +0000 (18:49 -0500)]
4875: Use range in for loops.
Phil Hodgson [Sat, 20 Dec 2014 18:34:39 +0000 (19:34 +0100)]
Merge branch '4858-graph-not-comparing' refs #4358
Phil Hodgson [Sat, 20 Dec 2014 17:58:03 +0000 (18:58 +0100)]
Merge branch 'master' into 4358-graph-not-comparing
Brett Smith [Fri, 19 Dec 2014 17:09:17 +0000 (12:09 -0500)]
4844: Node Manager doesn't treat min_nodes as min_nodes_idle.
There's a bad interaction between the past bugfixes to (a) implement
min_nodes, and (b) boot new nodes when existing nodes are busy.
Because min_nodes has been implemented at the server wishlist level in
the past, the daemon can't distinguish between "nodes requested to
fulfill min_nodes" and "nodes requested to fulfill jobs."
This commit puts all the responsibility for enforcing min_nodes in the
daemon, so that the server wishlist always represents real job
requirements. This lets the daemon correctly decide whether or not to
boot a new node when >= min_nodes are busy.
Brett Smith [Thu, 18 Dec 2014 21:20:15 +0000 (16:20 -0500)]
Merge branch '4670-node-manager-robust-tags-wip'
Closes #4670, #4812.
Brett Smith [Fri, 12 Dec 2014 21:16:39 +0000 (16:16 -0500)]
4670: Add a post-create hook to Node Manager for EC2 tagging.
The previous code was relying on the post-create tagging in libcloud's
EC2 driver. Unfortunately, that's not working out too well for us: if
it fails, you get no indication of that, and it doesn't get retried.
This moves the work up into Node Manager, where failures can be logged
and retried appropriately.
The retry support may be sufficient to resolve #4670. If it's not,
then the additional logging will help us track down the root cause.
Brett Smith [Fri, 12 Dec 2014 18:18:51 +0000 (13:18 -0500)]
4670: Node Manager handles more libcloud exceptions.
libcloud compute drivers (at least EC2 and GCE) raise bare Exceptions
when there's some problem talking to the cloud service. The previous
code was expecting to see a LibcloudError, so it wouldn't handle these
errors as intended.
I didn't want to just catch errors with "except Exception" everywhere,
so I added an is_cloud_exception class method to our driver classes to
more accurately identify exceptions that represent trouble talking to
the cloud service. It recognizes exact Exceptions, plus the other
classes we were catching before.
While I was at this, I gave more specific names to the wrapper methods
in compute node actor decorators, as a debugging aid.
Brett Smith [Thu, 18 Dec 2014 16:04:23 +0000 (11:04 -0500)]
4800: run-command calls sys.exit() with an integer.
Closes #4800.
Brett Smith [Thu, 18 Dec 2014 15:42:56 +0000 (10:42 -0500)]
4818: Add missing timeout in Node Manager test.
Refs #4818.
Tom Clegg [Thu, 18 Dec 2014 15:14:59 +0000 (10:14 -0500)]
Merge branch '4515-search-empty-project' closes #4515
Tom Clegg [Wed, 17 Dec 2014 14:44:27 +0000 (09:44 -0500)]
Remove excess heading and divider. No issue #
Tom Clegg [Wed, 17 Dec 2014 14:41:49 +0000 (09:41 -0500)]
Restore scroll on projects menu. Do not offer "Add project" button in projects dropdown in chooser dialog. closes #4811
Tom Clegg [Tue, 16 Dec 2014 16:37:01 +0000 (11:37 -0500)]
Ignore .eggs/ (*.egg isn't enough: .eggs/README.txt gets installed too, as a human-readable .gitignore.)
No issue #
Tom Clegg [Tue, 16 Dec 2014 16:16:59 +0000 (11:16 -0500)]
4515: Add controller tests for search dialog.
Brett Smith [Mon, 15 Dec 2014 19:46:43 +0000 (14:46 -0500)]
4818: Node Manager unpairs Arvados node when cloud node shuts down.
Without this, Node Manager doesn't correctly pair the Arvados node
with a new cloud node that's booted later. Closes #4818.
Tom Clegg [Mon, 15 Dec 2014 19:40:32 +0000 (14:40 -0500)]
4754: Move perf/prof deps to :test/:performance groups.
Move "do not reset unless Rails.env==test" logic into one place.
Brett Smith [Mon, 15 Dec 2014 17:58:52 +0000 (12:58 -0500)]
Merge branch '4481-update-user-docs-TC'
Closes #4741, #4790.
Tom Clegg [Mon, 15 Dec 2014 17:18:33 +0000 (12:18 -0500)]
4481: Fix ambiguous "Keep id" -> "locator" in example scripts.
Brett Smith [Wed, 10 Dec 2014 21:40:13 +0000 (16:40 -0500)]
4481: Refresh Crunch script tutorial page.
* The script now normalizes the output path, for consistency with
other scripts, and it looks nicer.
* Modernize the job log output slightly, and adjust text to match.
Brett Smith [Mon, 8 Dec 2014 19:37:23 +0000 (14:37 -0500)]
4481: Update tutorial Crunch scripts to use newer PySDK methods.
Most focus is on the file Collection file methods added in #3603.
Brett Smith [Mon, 15 Dec 2014 17:57:25 +0000 (12:57 -0500)]
Merge branch '4792-arv-ls-normalize-wip'
Closes #4792, #4813.
Phil Hodgson [Sun, 14 Dec 2014 12:47:02 +0000 (13:47 +0100)]
4358: fixed: the provenance graph was being generated twice, the second time for only one pipeline
Brett Smith [Fri, 12 Dec 2014 23:01:39 +0000 (18:01 -0500)]
4792: arv-ls normalizes the collection before listing.
I sort of ended up rewriting arv-ls to make it testable, but hey,
that's part of the support task. Normalization is the only functional
change I made.
Radhika Chippada [Fri, 12 Dec 2014 21:29:50 +0000 (16:29 -0500)]
closes #4414
Merge branch '4414-add-new-in-project-dropdown'
Radhika Chippada [Fri, 12 Dec 2014 21:20:44 +0000 (16:20 -0500)]
4414: use ensure_unique_name option to instruct api server to create unique name for new project.
Radhika Chippada [Fri, 12 Dec 2014 19:02:03 +0000 (14:02 -0500)]
4414: add "Add a new project" link to project dropdown.
Tim Pierce [Fri, 12 Dec 2014 16:22:07 +0000 (11:22 -0500)]
4598: correct search criteria for Crunch job output
Crunch stderr output is stored in the properties/text field of logs with
event_type 'stderr'.
Limited the filter criteria to event_type = 'stderr' and modified
text pattern filtering appropriately.
Now uses arvados.util.list_all to retrieve all stderr rows within the
specified time frame.
Radhika Chippada [Fri, 12 Dec 2014 14:26:03 +0000 (09:26 -0500)]
closes #4476
closes #4804
Merge branch '4476-search-next-page-issue'
Radhika Chippada [Fri, 12 Dec 2014 14:22:14 +0000 (09:22 -0500)]
closes #4799
Merge branch '4799-move-selected-error'
Radhika Chippada [Fri, 12 Dec 2014 14:14:02 +0000 (09:14 -0500)]
refs #4754
Merge branch '4754-performance-benchmarks'