Peter Amstutz [Tue, 19 Jun 2018 20:29:25 +0000 (16:29 -0400)]
Add mypy-extensions to build.list refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 20:16:32 +0000 (16:16 -0400)]
Merge branch '13638-acr-version' refs #13638
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 19:53:02 +0000 (15:53 -0400)]
13638: Restore logic of arvados-cwl-runner version is max(sdk, acr)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 19:21:11 +0000 (15:21 -0400)]
Merge branch '13627-update-cwltool' refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 17:45:03 +0000 (13:45 -0400)]
Merge branch '13497-controller'
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 17:44:45 +0000 (13:44 -0400)]
13627: Tweak test to possibly avoid name clash
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 17:43:16 +0000 (13:43 -0400)]
13497: Ensure every test run produces something in tmp/*.log.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 16:31:08 +0000 (12:31 -0400)]
13497: Merge branch 'master' into 13497-controller
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 19:27:23 +0000 (15:27 -0400)]
Merge branch '13579-keepstore-config-doc' refs #13579 refs #13580
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 19:22:42 +0000 (15:22 -0400)]
13627: Fix tests after rebase
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 20:58:50 +0000 (16:58 -0400)]
13627: Fix ArvadosWorkflow use of Builder
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:59:24 +0000 (10:59 -0400)]
13627: Fix crunch_script
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:49:45 +0000 (10:49 -0400)]
13627: Add missing file.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:40:43 +0000 (10:40 -0400)]
13627: Improve error reporting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:11:01 +0000 (10:11 -0400)]
13627: Fix loadingContext used for reloading document.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 02:38:57 +0000 (22:38 -0400)]
13627: a-c-r migration to cwltool loading/runtimeContext API
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Jun 2018 21:56:13 +0000 (17:56 -0400)]
API fixup
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 18:36:33 +0000 (14:36 -0400)]
13580: Add arvados-cwl-runner to storage class usage docs.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 14:54:05 +0000 (10:54 -0400)]
13580: Add storage classes section to user guide
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Mon, 18 Jun 2018 14:47:23 +0000 (16:47 +0200)]
Merge branch '13429-cwl-runner-storage-classes-support'
closes #13429
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Mon, 18 Jun 2018 14:28:15 +0000 (10:28 -0400)]
13579: Add a little more introductory material on allocating resources
for keepstore
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Mon, 18 Jun 2018 09:03:33 +0000 (11:03 +0200)]
Merge branch 'master' of git.curoverse.com:arvados into 13429-cwl-runner-storage-classes-support
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Mon, 18 Jun 2018 08:58:33 +0000 (10:58 +0200)]
Add storage_classes tests for arvados_cwl_runner
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Fri, 15 Jun 2018 20:18:09 +0000 (16:18 -0400)]
13497: Merge branch 'master' into 13497-controller
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 15 Jun 2018 19:58:29 +0000 (16:58 -0300)]
Merge branch '13581-cr-not-satisfiable-report'
Closes #13581
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 15 Jun 2018 19:41:51 +0000 (15:41 -0400)]
13497: Load env vars from /etc/arvados/environment in controller.
Facilitates setting node profile via ARVADOS_NODE_PROFILE environment
var without editing the systemd unit file.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Jun 2018 19:26:24 +0000 (15:26 -0400)]
13497: Rename SystemNodes to NodeProfiles in config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Jun 2018 19:08:59 +0000 (15:08 -0400)]
13497: Abort startup if Rails API cannot be found.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Jun 2018 19:06:02 +0000 (15:06 -0400)]
13497: Support "run-tests.sh --only go".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Jun 2018 19:05:17 +0000 (15:05 -0400)]
13497: Bump version numbers for Go packages when lib/ changes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Nico Cesar [Thu, 14 Jun 2018 22:40:53 +0000 (18:40 -0400)]
13579: Admin documentation setting up Azure resources
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <ncesar@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 21:03:24 +0000 (17:03 -0400)]
13497: Quote file paths in test suite nginx.conf.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 21:02:10 +0000 (17:02 -0400)]
13497: Suppress nginx "info" logs from console.
(unless ARVADOS_DEBUG is set)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 20:29:11 +0000 (16:29 -0400)]
13497: Send test server logs to {workspace}/tmp/*.log.
Don't send them to console unless ARVADOS_DEBUG is set.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 19:37:13 +0000 (15:37 -0400)]
13497: Add systemd unit to arvados-controller package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 14 Jun 2018 19:24:46 +0000 (15:24 -0400)]
13579: Admin documentation about storage classes
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 19:23:08 +0000 (15:23 -0400)]
13497: Accept host key on command line.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 17:34:58 +0000 (13:34 -0400)]
13497: Add controller to health check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Jun 2018 20:59:52 +0000 (16:59 -0400)]
13497: Set usable path for nginx request body buffering.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Jun 2018 20:43:41 +0000 (16:43 -0400)]
13497: Remove alternate integration test glue in Workbench.
Expect run-tests.sh to have set everything up correctly instead.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Jun 2018 19:51:30 +0000 (15:51 -0400)]
13497: Route API traffic through controller in test suites.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Jun 2018 19:51:07 +0000 (15:51 -0400)]
13497: Don't propagate connection-oriented headers when proxying.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Jun 2018 19:49:26 +0000 (15:49 -0400)]
13497: Send request body when proxying.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Jun 2018 20:39:41 +0000 (16:39 -0400)]
13497: Add timeout for proxy requests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Jun 2018 20:00:07 +0000 (16:00 -0400)]
13497: Proxy requests to Rails API.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Jun 2018 15:10:12 +0000 (11:10 -0400)]
13497: Move common system service code to lib/service.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Jun 2018 17:16:37 +0000 (13:16 -0400)]
Merge branch '13407-volume-replication'
refs #13407
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Jun 2018 17:09:34 +0000 (14:09 -0300)]
Merge branch '13617-anm-instance-type-logging'
Closes #13617
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 18:29:35 +0000 (14:29 -0400)]
docs wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Jun 2018 16:22:09 +0000 (12:22 -0400)]
13579: Update from comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Jun 2018 15:39:08 +0000 (12:39 -0300)]
13617: Replaces all logging about size names with size ids.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Jun 2018 15:04:22 +0000 (12:04 -0300)]
13581: Adds log message when no instance types are configured.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Jun 2018 20:04:15 +0000 (17:04 -0300)]
Merge branch '7478-anm-libcloud-deps-fix'
Refs #7478
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Jun 2018 19:29:17 +0000 (16:29 -0300)]
7478: Fix nodemanager's libcloud install dependency.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Jun 2018 13:04:07 +0000 (10:04 -0300)]
Merge branch '7478-invalid-size-not-defined'
Refs #7478
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Jun 2018 01:35:21 +0000 (22:35 -0300)]
7478: Fixes InvalidCloudSize creation. Adds wishlist related node info to logs.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Jun 2018 18:24:41 +0000 (15:24 -0300)]
Merge branch '7478-anm-spot-instances'
Closes #7478
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Jun 2018 17:44:24 +0000 (14:44 -0300)]
7478: Moves invalid cloud size node's shutdown decision to proper method.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 7 Jun 2018 17:11:00 +0000 (14:11 -0300)]
13581: Available types reported to the user when CR is not satisfiable.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 12 Jun 2018 14:46:01 +0000 (10:46 -0400)]
13407: Test stats reporting for volumes with replication>1.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Tue, 12 Jun 2018 13:10:23 +0000 (15:10 +0200)]
Update storage_classes support for arvados_cwl_runner to work correctly
when arvados_cwl_runner is run in submit mode.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Lucas Di Pentima [Mon, 11 Jun 2018 22:49:21 +0000 (19:49 -0300)]
7478: Fixes GCE driver's arvados_node_size tag handling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 11 Jun 2018 19:27:55 +0000 (15:27 -0400)]
13579: Document ManagementToken. Add information about trash behavior.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Jun 2018 19:04:20 +0000 (15:04 -0400)]
13579: Remove some example output because I don't know if it is up to date.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Jun 2018 18:58:24 +0000 (14:58 -0400)]
13579: Keepstore install documentation now describes using config.yml
Add documentation for using S3-compatible object storage.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 11 Jun 2018 21:01:38 +0000 (17:01 -0400)]
13407: Fix stats reporting for mounts with replication>1.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 11 Jun 2018 20:51:38 +0000 (17:51 -0300)]
7478: Adds test to check that state is 'down' with 'invalid' size.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 11 Jun 2018 19:47:50 +0000 (16:47 -0300)]
7478: Adds tests on driver's create_node calls.
* Check that arvados_node_size tag is passed
* On EC2 driver, check that ex_spot_market=True is used when requesting
spot instances.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 11 Jun 2018 19:36:21 +0000 (15:36 -0400)]
13407: Take keepstore-reported volume replication into account.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 11 Jun 2018 19:32:22 +0000 (15:32 -0400)]
Merge branch '13562-group-properties' closes #13562
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Jun 2018 19:31:56 +0000 (15:31 -0400)]
Merge branch 'master' into 13562-group-properties
Peter Amstutz [Mon, 11 Jun 2018 19:30:05 +0000 (15:30 -0400)]
Merge branch '12960-migrate-properties' closes #12960
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 11 Jun 2018 16:59:31 +0000 (13:59 -0300)]
7478: Config load fix & test updates about instance type decoupling
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 11 Jun 2018 15:34:22 +0000 (12:34 -0300)]
Merge branch 'master' into 7478-anm-spot-instances
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 11 Jun 2018 15:10:44 +0000 (12:10 -0300)]
7478: Assign invalid cloud sizes to nodes with stale arvados_node_size tags
When retrieving the node's list from the cloud provider, if the tag
refers to a non existant arvados cloud size, assign an invalid size
and return 'down' state when asked so that it can be properly shut down.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fuad Muhic [Mon, 11 Jun 2018 13:50:27 +0000 (15:50 +0200)]
Merge branch 'master' of git.curoverse.com:arvados into 13429-cwl-runner-storage-classes-support
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Fri, 8 Jun 2018 19:05:12 +0000 (15:05 -0400)]
13594: Remove table lock.
refs #13594
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 18:59:41 +0000 (14:59 -0400)]
12960: Fix test due to slightly different serialization from jsonb
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 18:44:26 +0000 (14:44 -0400)]
13562: Migration needs to update full text search index on groups
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 14:13:03 +0000 (10:13 -0400)]
12960: Update documentation.
Also allow "properties" to be updated on committed container
requests (bugfix implementation to match documented behavior).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 13:15:34 +0000 (09:15 -0400)]
13562: Update documentation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Jun 2018 12:59:56 +0000 (08:59 -0400)]
13562: Add "properties" field to groups, supports subproperty query.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Fri, 8 Jun 2018 09:05:22 +0000 (11:05 +0200)]
Change multiple storage classes error handling in cwl_runner
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Thu, 7 Jun 2018 20:58:57 +0000 (16:58 -0400)]
Merge branch '11907-acr-stable-pdh' refs #11907
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 7 Jun 2018 19:52:42 +0000 (16:52 -0300)]
Merge branch '13480-anm-tagless-azure-node'
Closes #13480
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 7 Jun 2018 19:26:36 +0000 (15:26 -0400)]
11907: Fix timezone handling for HTTP timestamps.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 7 Jun 2018 19:24:04 +0000 (15:24 -0400)]
Merge branch '13427-multiple-mounts'
refs #13427
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Jun 2018 19:23:05 +0000 (15:23 -0400)]
13497: Build arvados-server and arvados-controller packages.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 6 Jun 2018 19:25:45 +0000 (15:25 -0400)]
13427: More symlink hack
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Jun 2018 14:20:29 +0000 (10:20 -0400)]
13497: Add arvados-server command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Jun 2018 13:33:20 +0000 (09:33 -0400)]
13497: Use basename($0) as subcommand, if it is one.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Jun 2018 04:46:47 +0000 (00:46 -0400)]
13497: Add controller, proxy to Rails API.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 7 Jun 2018 18:33:03 +0000 (14:33 -0400)]
12960: Migrate properties fields to jsonb to support subproperty filters.
Specifically: links.properties and container_requests.properties,
nodes.properties, and nodes.info.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Jun 2018 17:13:53 +0000 (13:13 -0400)]
11907: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Thu, 7 Jun 2018 15:20:43 +0000 (17:20 +0200)]
Merge branch '13330-collection-save'
refs #13330
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Thu, 7 Jun 2018 13:54:47 +0000 (09:54 -0400)]
11907: Make collections containing dependencies have predictable PDHs
Removes optimization that tries to avoid redundant file
uploads (decided complexity tradeoff isn't worth it.) Collections
created from local file inputs longer use block packing.
Likely to invalidate job reuse for jobs submitted by past versions of
a-c-r, but will have more stable job reuse going forward.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Jun 2018 14:38:41 +0000 (10:38 -0400)]
Merge branch '11907-uploadfile-no-pack' refs #11907
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Jun 2018 13:44:16 +0000 (09:44 -0400)]
11907: Add option to uploadfiles to disable packing.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Thu, 7 Jun 2018 09:39:46 +0000 (11:39 +0200)]
Fix ciso8601 issue in collections tests.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 6 Jun 2018 21:01:53 +0000 (17:01 -0400)]
13427: Use same index result N times if a device is mounted N times.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log