arvados.git
4 years agoMerge branch 'master' into 15572-new-install-docs
Peter Amstutz [Mon, 30 Dec 2019 15:02:36 +0000 (10:02 -0500)]
Merge branch 'master' into 15572-new-install-docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch '15942-cancel-unsatisfiable'
Tom Clegg [Sat, 21 Dec 2019 22:12:38 +0000 (17:12 -0500)]
Merge branch '15942-cancel-unsatisfiable'

refs #15942

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15942: Update test to fail more reliably when bug reappears.
Tom Clegg [Sat, 21 Dec 2019 22:07:12 +0000 (17:07 -0500)]
15942: Update test to fail more reliably when bug reappears.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15572: Many small doc tweaks as part of review.
Ward Vandewege [Fri, 20 Dec 2019 16:17:36 +0000 (11:17 -0500)]
15572: Many small doc tweaks as part of review.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

5 years agoA few fixes for workbench in the way it displays the ARVADOS_API_HOST
Ward Vandewege [Thu, 19 Dec 2019 16:27:25 +0000 (11:27 -0500)]
A few fixes for workbench in the way it displays the ARVADOS_API_HOST
and ssh ProxyCommand.

refs #14812

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

5 years ago15942: Ensure container with no suitable type is never in queue.
Tom Clegg [Thu, 19 Dec 2019 14:23:01 +0000 (09:23 -0500)]
15942: Ensure container with no suitable type is never in queue.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15942: Fix attempt to run container after deciding it cannot run.
Tom Clegg [Thu, 19 Dec 2019 04:41:21 +0000 (23:41 -0500)]
15942: Fix attempt to run container after deciding it cannot run.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15572: add note that mount tmp device_type is not implemented
Peter Amstutz [Wed, 18 Dec 2019 21:38:45 +0000 (16:38 -0500)]
15572: add note that mount tmp device_type is not implemented

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Fix healthcheck doc to refer to Services instead NodeProfiles
Peter Amstutz [Wed, 18 Dec 2019 21:36:07 +0000 (16:36 -0500)]
15572: Fix healthcheck doc to refer to Services instead NodeProfiles

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Fix Services.Workbench1 typo
Peter Amstutz [Wed, 18 Dec 2019 20:01:59 +0000 (15:01 -0500)]
15572: Fix Services.Workbench1 typo

Add redirect http-to-https blocks for workbench.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Add notes about keep-web and compute node image configuration
Peter Amstutz [Wed, 18 Dec 2019 18:22:18 +0000 (13:22 -0500)]
15572: Add notes about keep-web and compute node image configuration

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch '15933-setup-uuid-param' refs #15933
Peter Amstutz [Wed, 18 Dec 2019 14:36:09 +0000 (09:36 -0500)]
Merge branch '15933-setup-uuid-param' refs #15933

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoUpdate CI url.
Ward Vandewege [Tue, 17 Dec 2019 20:54:12 +0000 (15:54 -0500)]
Update CI url.

No issue #

5 years ago15933: Remove unused openid_prefix from users/setup tests
Peter Amstutz [Tue, 17 Dec 2019 20:46:32 +0000 (15:46 -0500)]
15933: Remove unused openid_prefix from users/setup tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15933: Declare 'uuid' param on users/setup method discovery doc
Peter Amstutz [Tue, 17 Dec 2019 20:23:54 +0000 (15:23 -0500)]
15933: Declare 'uuid' param on users/setup method discovery doc

Also remove unused 'openid_prefix' parameter.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: GitSSH should have leading ssh://
Peter Amstutz [Tue, 17 Dec 2019 18:24:40 +0000 (13:24 -0500)]
15572: GitSSH should have leading ssh://

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: More information about setting up Azure credentials
Peter Amstutz [Tue, 17 Dec 2019 17:14:17 +0000 (12:14 -0500)]
15572: More information about setting up Azure credentials

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Make note that secret inputs must be submitted on command line
Peter Amstutz [Tue, 17 Dec 2019 16:59:19 +0000 (11:59 -0500)]
15572: Make note that secret inputs must be submitted on command line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Reorganize and update version migration documentation
Peter Amstutz [Tue, 17 Dec 2019 16:43:42 +0000 (11:43 -0500)]
15572: Reorganize and update version migration documentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: WebDAV ExternalURL expected to have trailing slash
Peter Amstutz [Mon, 16 Dec 2019 21:22:44 +0000 (16:22 -0500)]
15572: WebDAV ExternalURL expected to have trailing slash

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Update gitolite install instructions
Peter Amstutz [Mon, 16 Dec 2019 20:24:12 +0000 (15:24 -0500)]
15572: Update gitolite install instructions

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Install doc updates for workbench, ws, dispatcher
Peter Amstutz [Mon, 16 Dec 2019 16:58:29 +0000 (11:58 -0500)]
15572: Install doc updates for workbench, ws, dispatcher

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMove workbench packages dependencies into the packages.
Ward Vandewege [Sun, 15 Dec 2019 15:41:00 +0000 (10:41 -0500)]
Move workbench packages dependencies into the packages.

closes #15932

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

5 years ago15572: Documentation tweaks from experience installing dev cluster
Peter Amstutz [Sun, 15 Dec 2019 05:02:02 +0000 (00:02 -0500)]
15572: Documentation tweaks from experience installing dev cluster

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Add missing file
Peter Amstutz [Fri, 13 Dec 2019 17:06:11 +0000 (12:06 -0500)]
15572: Add missing file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Passes link checking
Peter Amstutz [Fri, 13 Dec 2019 16:43:57 +0000 (11:43 -0500)]
15572: Passes link checking

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoPins signet gem version on arvados-login-sync to keep ruby 2.3 compatibility.
Lucas Di Pentima [Fri, 13 Dec 2019 15:08:30 +0000 (12:08 -0300)]
Pins signet gem version on arvados-login-sync to keep ruby 2.3 compatibility.

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

5 years ago15572: Add hypothes.is annotations to docs
Peter Amstutz [Fri, 13 Dec 2019 05:06:00 +0000 (00:06 -0500)]
15572: Add hypothes.is annotations to docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Make notes on cloud/slurm dispatcher install to set up VM / compute nodes.
Peter Amstutz [Thu, 12 Dec 2019 22:32:10 +0000 (17:32 -0500)]
15572: Make notes on cloud/slurm dispatcher install to set up VM / compute nodes.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15572: Epic documentation commit
Peter Amstutz [Thu, 12 Dec 2019 22:21:56 +0000 (17:21 -0500)]
15572: Epic documentation commit

* Revise dispatcher install
* Revise shell and compute node install
* Fix up Python and CLI SDK install docs
* Refactor boilerplate sections into parameterized liquid template include

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch '15922-force-legacy-api-14'
Tom Clegg [Thu, 12 Dec 2019 20:55:27 +0000 (15:55 -0500)]
Merge branch '15922-force-legacy-api-14'

refs #15922

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Test for writable_by in response.
Tom Clegg [Thu, 12 Dec 2019 20:46:51 +0000 (15:46 -0500)]
15922: Test for writable_by in response.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Update test to accommodate etag.
Tom Clegg [Tue, 10 Dec 2019 20:25:49 +0000 (15:25 -0500)]
15922: Update test to accommodate etag.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Fix propagation of user setup and merge requests.
Tom Clegg [Tue, 10 Dec 2019 17:43:35 +0000 (12:43 -0500)]
15922: Fix propagation of user setup and merge requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Preserve etag in responses.
Tom Clegg [Tue, 10 Dec 2019 15:31:38 +0000 (10:31 -0500)]
15922: Preserve etag in responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Fix incorrect routes.
Tom Clegg [Tue, 10 Dec 2019 15:31:06 +0000 (10:31 -0500)]
15922: Fix incorrect routes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Preserve writable_by in user and collection responses.
Tom Clegg [Mon, 9 Dec 2019 21:36:23 +0000 (16:36 -0500)]
15922: Preserve writable_by in user and collection responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Accept HEAD method on all GET routes.
Tom Clegg [Mon, 9 Dec 2019 14:51:55 +0000 (09:51 -0500)]
15922: Accept HEAD method on all GET routes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15922: Change EnableBetaController14287 -> ForceLegacyAPI14.
Tom Clegg [Sun, 8 Dec 2019 00:48:50 +0000 (19:48 -0500)]
15922: Change EnableBetaController14287 -> ForceLegacyAPI14.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years agoMerge branch '15928-fs-deadlock'
Tom Clegg [Thu, 12 Dec 2019 06:23:43 +0000 (01:23 -0500)]
Merge branch '15928-fs-deadlock'

refs #15928

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15572: Fix up left nav rendering highlighting
Peter Amstutz [Wed, 11 Dec 2019 21:06:06 +0000 (16:06 -0500)]
15572: Fix up left nav rendering highlighting

Do the right thing with pages that are symlinks.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch '15924-import-path'
Tom Clegg [Wed, 11 Dec 2019 16:38:43 +0000 (11:38 -0500)]
Merge branch '15924-import-path'

refs #15924

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15928: Fix deadlock.
Tom Clegg [Wed, 11 Dec 2019 15:40:01 +0000 (10:40 -0500)]
15928: Fix deadlock.

Locking the parent dir isn't necessary to finish async writes, and
deadlocks if a waitPrune() is waiting for the async writes to finish.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15572: Updating dispatcher install
Peter Amstutz [Tue, 10 Dec 2019 21:40:35 +0000 (16:40 -0500)]
15572: Updating dispatcher install

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch 'master' into 15572-new-install-docs
Peter Amstutz [Tue, 10 Dec 2019 21:14:00 +0000 (16:14 -0500)]
Merge branch 'master' into 15572-new-install-docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15924: Update github links to arvados org.
Tom Clegg [Tue, 10 Dec 2019 20:47:29 +0000 (15:47 -0500)]
15924: Update github links to arvados org.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years ago15572: Update workbench, composer, websocket, git, shell install docs
Peter Amstutz [Tue, 10 Dec 2019 20:40:53 +0000 (15:40 -0500)]
15572: Update workbench, composer, websocket, git, shell install docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years ago15924: Change import paths to git.arvados.org.
Tom Clegg [Tue, 10 Dec 2019 20:23:41 +0000 (15:23 -0500)]
15924: Change import paths to git.arvados.org.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

5 years agoMerge branch 'MajewskiKrzysztof-file-token-error'
Lucas Di Pentima [Tue, 10 Dec 2019 18:29:59 +0000 (15:29 -0300)]
Merge branch 'MajewskiKrzysztof-file-token-error'
Closes #15919

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

5 years agoMerge branch 'file-token-error' of git://github.com/MajewskiKrzysztof/arvados into...
Lucas Di Pentima [Tue, 10 Dec 2019 17:40:16 +0000 (14:40 -0300)]
Merge branch 'file-token-error' of git://github.com/MajewskiKrzysztof/arvados into MajewskiKrzysztof-file-token-error

5 years agoMerge branch 'MajewskiKrzysztof-exists-filter'
Lucas Di Pentima [Tue, 10 Dec 2019 17:33:45 +0000 (14:33 -0300)]
Merge branch 'MajewskiKrzysztof-exists-filter'
Closes #15920

5 years agoAdd missing EXISTS filter.
Krzysztof Majewski [Fri, 15 Nov 2019 09:05:24 +0000 (10:05 +0100)]
Add missing EXISTS filter.

Arvados-DCO-1.1-Signed-off-by: Krzysztof Majewski <majewski.kielce@gmail.com>

5 years ago15572: Updated install docs for keep components, login/SSO
Peter Amstutz [Thu, 5 Dec 2019 21:43:04 +0000 (16:43 -0500)]
15572: Updated install docs for keep components, login/SSO

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoAdd Curii Corporation to AUTHORS
Peter Amstutz [Mon, 9 Dec 2019 21:06:28 +0000 (16:06 -0500)]
Add Curii Corporation to AUTHORS

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoUpdate gitter link to arvados/community
Peter Amstutz [Mon, 9 Dec 2019 20:43:52 +0000 (15:43 -0500)]
Update gitter link to arvados/community

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoRemove biostars link
Peter Amstutz [Mon, 9 Dec 2019 19:38:09 +0000 (14:38 -0500)]
Remove biostars link

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoFix support links
Peter Amstutz [Mon, 9 Dec 2019 19:26:31 +0000 (14:26 -0500)]
Fix support links

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoarvbox uses "go install" instead of "go get" no issue #
Peter Amstutz [Sun, 8 Dec 2019 21:33:51 +0000 (16:33 -0500)]
arvbox uses "go install" instead of "go get" no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 years agoMerge branch '15910-crunch-run-crash'
Tom Clegg [Thu, 5 Dec 2019 15:45:02 +0000 (10:45 -0500)]
Merge branch '15910-crunch-run-crash'

refs #15910

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15572: Documentation WIP
Peter Amstutz [Wed, 4 Dec 2019 23:30:56 +0000 (18:30 -0500)]
15572: Documentation WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMove all api server packages dependencies into the packages.
Ward Vandewege [Wed, 4 Dec 2019 19:51:18 +0000 (14:51 -0500)]
Move all api server packages dependencies into the packages.

closes #15905

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '15900-gem-version'
Tom Clegg [Wed, 4 Dec 2019 18:56:50 +0000 (13:56 -0500)]
Merge branch '15900-gem-version'

refs #15900

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15904-remove-old-config-files-from-rails-packages'
Ward Vandewege [Wed, 4 Dec 2019 16:43:56 +0000 (11:43 -0500)]
Merge branch '15904-remove-old-config-files-from-rails-packages'

closes #15904

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15910: Fix races in collectionfs flush/sync.
Tom Clegg [Wed, 4 Dec 2019 16:28:38 +0000 (11:28 -0500)]
15910: Fix races in collectionfs flush/sync.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoStop adding application.yml and database.yml symlinks on fresh installs of the
Ward Vandewege [Wed, 4 Dec 2019 14:35:16 +0000 (09:35 -0500)]
Stop adding application.yml and database.yml symlinks on fresh installs of the
rails packages.

refs #15904

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15572: List nginx under external dependencies
Peter Amstutz [Tue, 3 Dec 2019 23:08:05 +0000 (18:08 -0500)]
15572: List nginx under external dependencies

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15572: Add nginx install page
Peter Amstutz [Tue, 3 Dec 2019 23:07:02 +0000 (18:07 -0500)]
15572: Add nginx install page

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15572: Ongoing install guide refresh/refactor
Peter Amstutz [Tue, 3 Dec 2019 23:06:27 +0000 (18:06 -0500)]
15572: Ongoing install guide refresh/refactor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15572: API server and controller install docs
Peter Amstutz [Tue, 3 Dec 2019 20:58:38 +0000 (15:58 -0500)]
15572: API server and controller install docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15900: Report stable gem version for a given commit.
Tom Clegg [Tue, 3 Dec 2019 16:39:29 +0000 (11:39 -0500)]
15900: Report stable gem version for a given commit.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix file token error
Krzysztof Majewski [Tue, 3 Dec 2019 13:11:42 +0000 (14:11 +0100)]
Fix file token error
Arvados-DCO-1.1-Signed-off-by: Krzysztof Majewski <majewski.kielce@gmail.com>

5 years ago15572: Start describing config file
Peter Amstutz [Mon, 2 Dec 2019 23:13:31 +0000 (18:13 -0500)]
15572: Start describing config file

Move the "choose components" table into prereqs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15572: First pass on new prereqs/planning page
Peter Amstutz [Mon, 2 Dec 2019 19:24:13 +0000 (14:24 -0500)]
15572: First pass on new prereqs/planning page

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoAdd PATCH to allowed CORS methods.
Tom Clegg [Sat, 30 Nov 2019 04:08:44 +0000 (23:08 -0500)]
Add PATCH to allowed CORS methods.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoTest X-Http-Method-Override.
Tom Clegg [Sat, 30 Nov 2019 04:08:23 +0000 (23:08 -0500)]
Test X-Http-Method-Override.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix Rails package version calculation again.
Tom Clegg [Fri, 29 Nov 2019 19:16:39 +0000 (14:16 -0500)]
Fix Rails package version calculation again.

refs #15819
refs #15863

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15864-controller-fixes'
Tom Clegg [Fri, 29 Nov 2019 07:46:15 +0000 (02:46 -0500)]
Merge branch '15864-controller-fixes'

refs #15864

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15864: Use POST/X-Http-Method-Override instead of long request URLs.
Tom Clegg [Fri, 29 Nov 2019 07:42:09 +0000 (02:42 -0500)]
15864: Use POST/X-Http-Method-Override instead of long request URLs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15864: Support X-Http-Method-Override header used by Python SDK.
Tom Clegg [Fri, 29 Nov 2019 07:38:35 +0000 (02:38 -0500)]
15864: Support X-Http-Method-Override header used by Python SDK.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15864: Fix error response when requesting nonexistent UUIDs.
Tom Clegg [Fri, 29 Nov 2019 07:37:41 +0000 (02:37 -0500)]
15864: Fix error response when requesting nonexistent UUIDs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix rails package versions for dev builds.
Tom Clegg [Thu, 28 Nov 2019 18:04:11 +0000 (13:04 -0500)]
Fix rails package versions for dev builds.

[ $goversion > $railsversion ] doesn't compare versions, it just
creates an empty file called $railsversion and returns success.  As a
result, the arvados-api-server and arvados-workbench package
numbers (and the rebuild-or-reuse decisions) were based only on the
last change to cmd/arvados-server, disregarding more recent changes in
the respective Rails projects.

refs #15819
refs #15863

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15795-sys-root-token'
Tom Clegg [Thu, 28 Nov 2019 15:19:46 +0000 (10:19 -0500)]
Merge branch '15795-sys-root-token'

refs #15795

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoAdd Debian 10 ("buster") to the supported GNU/Linux distributions list.
Ward Vandewege [Wed, 27 Nov 2019 20:20:21 +0000 (15:20 -0500)]
Add Debian 10 ("buster") to the supported GNU/Linux distributions list.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '15877-accept-json-in-json'
Tom Clegg [Tue, 26 Nov 2019 21:16:27 +0000 (16:16 -0500)]
Merge branch '15877-accept-json-in-json'

fixes #15877

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15877: Accept JSON-encoded param values in JSON request body.
Tom Clegg [Tue, 26 Nov 2019 20:32:30 +0000 (15:32 -0500)]
15877: Accept JSON-encoded param values in JSON request body.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15849-vocab-migration-example'
Lucas Di Pentima [Tue, 26 Nov 2019 20:08:07 +0000 (17:08 -0300)]
Merge branch '15849-vocab-migration-example'
Closes #15849

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15795-sys-root-token' refs #15795
Peter Amstutz [Tue, 26 Nov 2019 20:06:42 +0000 (15:06 -0500)]
Merge branch '15795-sys-root-token' refs #15795

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15849: Adds a message for dry-run mode when nothing should be migrated.
Lucas Di Pentima [Tue, 26 Nov 2019 20:06:03 +0000 (17:06 -0300)]
15849: Adds a message for dry-run mode when nothing should be migrated.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15849: Removes default value setting to required argument.
Lucas Di Pentima [Tue, 26 Nov 2019 19:51:20 +0000 (16:51 -0300)]
15849: Removes default value setting to required argument.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15849: Adds symlink to script from doc's includes subdir.
Lucas Di Pentima [Tue, 26 Nov 2019 19:49:31 +0000 (16:49 -0300)]
15849: Adds symlink to script from doc's includes subdir.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15849: Moves script to 'tools/' subdir, with some fixes.
Lucas Di Pentima [Tue, 26 Nov 2019 19:46:14 +0000 (16:46 -0300)]
15849: Moves script to 'tools/' subdir, with some fixes.

* Fixed --vocabulary-file argument requirement check
* Modified API server querying to get stable listings

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15803-unsetup' refs #15803
Peter Amstutz [Tue, 26 Nov 2019 19:17:10 +0000 (14:17 -0500)]
Merge branch '15803-unsetup' refs #15803

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoRevert requirement for bundler upgrade.
Tom Clegg [Tue, 26 Nov 2019 18:55:14 +0000 (13:55 -0500)]
Revert requirement for bundler upgrade.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoInstall bundler 2 in package build images.
Tom Clegg [Tue, 26 Nov 2019 16:21:09 +0000 (11:21 -0500)]
Install bundler 2 in package build images.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoUpdate Go.
Tom Clegg [Tue, 26 Nov 2019 16:20:44 +0000 (11:20 -0500)]
Update Go.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15795: Ensure dispatcher can use SystemRootToken to lock containers.
Tom Clegg [Tue, 26 Nov 2019 15:54:48 +0000 (10:54 -0500)]
15795: Ensure dispatcher can use SystemRootToken to lock containers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15803: Add test that inactive user is not activated on remote.
Peter Amstutz [Tue, 26 Nov 2019 15:13:43 +0000 (10:13 -0500)]
15803: Add test that inactive user is not activated on remote.

Add links to documentation.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoUpdate token in keepproxy test.
Tom Clegg [Tue, 26 Nov 2019 15:10:01 +0000 (10:10 -0500)]
Update token in keepproxy test.

Fixes commit b047cc92acab06d4c1f1d80173486f951b63d729.

refs #15720

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15849: Moves script to the documentation, includes it on the admin section.
Lucas Di Pentima [Tue, 26 Nov 2019 14:35:10 +0000 (11:35 -0300)]
15849: Moves script to the documentation, includes it on the admin section.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15849: Errors out when a duplicated label is detected on the vocabulary.
Lucas Di Pentima [Tue, 26 Nov 2019 14:16:18 +0000 (11:16 -0300)]
15849: Errors out when a duplicated label is detected on the vocabulary.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>