arvados.git
4 years ago15954: boot RailsAPI and controller.
Tom Clegg [Fri, 24 Jan 2020 18:37:07 +0000 (13:37 -0500)]
15954: boot RailsAPI and controller.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoPin signet <= 0.11 to support Ruby 2.3
Peter Amstutz [Sat, 18 Jan 2020 21:54:15 +0000 (16:54 -0500)]
Pin signet <= 0.11 to support Ruby 2.3

refs #16045

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoSupport OS packaging of Ruby/bunder (fix login-sync)
Peter Amstutz [Sat, 18 Jan 2020 02:30:00 +0000 (21:30 -0500)]
Support OS packaging of Ruby/bunder (fix login-sync)

refs #16045

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoArvbox uses OS package for Ruby instead of building from source
Peter Amstutz [Sat, 18 Jan 2020 00:34:16 +0000 (19:34 -0500)]
Arvbox uses OS package for Ruby instead of building from source

refs #16045

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoSupport OS packaging of Ruby/bunder, with note in install docs
Peter Amstutz [Sat, 18 Jan 2020 00:32:58 +0000 (19:32 -0500)]
Support OS packaging of Ruby/bunder, with note in install docs

refs #16045

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago"last supported version" should be release version not git commit
Peter Amstutz [Fri, 17 Jan 2020 20:15:02 +0000 (15:15 -0500)]
"last supported version" should be release version not git commit

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16046-keepdocker-slash' closes #16046
Peter Amstutz [Fri, 17 Jan 2020 20:01:28 +0000 (15:01 -0500)]
Merge branch '16046-keepdocker-slash' closes #16046

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16046: Replace slash with space for "repo/image" collection name
Peter Amstutz [Fri, 17 Jan 2020 19:47:23 +0000 (14:47 -0500)]
16046: Replace slash with space for "repo/image" collection name

Add a property with the original repo/image name so that it is still
findable in search.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoAdd "copy files from a collection to a new collection" to cookbook
Peter Amstutz [Fri, 17 Jan 2020 16:41:01 +0000 (11:41 -0500)]
Add "copy files from a collection to a new collection" to cookbook

closes #16044

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoLogSecondsBetweenEvents should be a duration
Peter Amstutz [Fri, 17 Jan 2020 16:04:34 +0000 (11:04 -0500)]
LogSecondsBetweenEvents should be a duration

refs #16014

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoAdjust default for LogSecondsBetweenEvents from 1s to 5s
Peter Amstutz [Fri, 17 Jan 2020 15:39:31 +0000 (10:39 -0500)]
Adjust default for LogSecondsBetweenEvents from 1s to 5s

Because logging every 1s is known to overwhelm the API server at even
moderate loads.

closes #16014

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '15836-slash-in-collection-name'
Tom Clegg [Thu, 16 Jan 2020 21:07:00 +0000 (16:07 -0500)]
Merge branch '15836-slash-in-collection-name'

fixes #15836

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoRestore behavior to choose version from latest of python sdk or cwl
Peter Amstutz [Thu, 16 Jan 2020 19:49:49 +0000 (14:49 -0500)]
Restore behavior to choose version from latest of python sdk or cwl

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15836: Mention forward slash substitution options in upgrade notes.
Tom Clegg [Thu, 16 Jan 2020 19:24:35 +0000 (14:24 -0500)]
15836: Mention forward slash substitution options in upgrade notes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoDoc updates for install Ruby and Python SDKs and utilities
Peter Amstutz [Thu, 16 Jan 2020 17:34:28 +0000 (12:34 -0500)]
Doc updates for install Ruby and Python SDKs and utilities

closes #16000
closes #16001

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15836: Use proper URL encoding in test case.
Tom Clegg [Thu, 16 Jan 2020 17:12:51 +0000 (12:12 -0500)]
15836: Use proper URL encoding in test case.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15836: Update wording in config comments.
Tom Clegg [Thu, 16 Jan 2020 17:01:53 +0000 (12:01 -0500)]
15836: Update wording in config comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15836: Merge branch 'master'
Tom Clegg [Thu, 16 Jan 2020 16:59:39 +0000 (11:59 -0500)]
15836: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoFix assertVersionOutput to handle '.dev' versions
Peter Amstutz [Thu, 16 Jan 2020 16:52:43 +0000 (11:52 -0500)]
Fix assertVersionOutput to handle '.dev' versions

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoversion-at-commit.sh uses '.dev' instead of '.pre'
Peter Amstutz [Thu, 16 Jan 2020 15:40:08 +0000 (10:40 -0500)]
version-at-commit.sh uses '.dev' instead of '.pre'

Makes Python happy -- setuptools allows '.dev' in the version, but
normalizes '.pre' into '.rc' which actually changes the package
filename.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoFix assertVersionOutput to handle 'pre' versions
Peter Amstutz [Thu, 16 Jan 2020 02:53:05 +0000 (21:53 -0500)]
Fix assertVersionOutput to handle 'pre' versions

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate python packages to use version_at_commit script
Peter Amstutz [Wed, 15 Jan 2020 20:26:54 +0000 (15:26 -0500)]
Update python packages to use version_at_commit script

Update test images to use Bundler 2.0.2

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate git commit pin for arvados gem (workbench this time)
Peter Amstutz [Wed, 15 Jan 2020 18:24:02 +0000 (13:24 -0500)]
Update git commit pin for arvados gem (workbench this time)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate git commit pin for arvados gem
Peter Amstutz [Wed, 15 Jan 2020 18:19:58 +0000 (13:19 -0500)]
Update git commit pin for arvados gem

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '15823-dispatchcloud-api-docs'
Tom Clegg [Wed, 15 Jan 2020 15:04:19 +0000 (10:04 -0500)]
Merge branch '15823-dispatchcloud-api-docs'

closes #15823

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoUpdate version number script to work with git 2.1.4.
Tom Clegg [Fri, 3 Jan 2020 20:24:08 +0000 (15:24 -0500)]
Update version number script to work with git 2.1.4.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoUpdate docker repo, pin bundler to workaround bug
Peter Amstutz [Wed, 15 Jan 2020 03:05:13 +0000 (22:05 -0500)]
Update docker repo, pin bundler to workaround bug

refs #16010

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoFix glob typo to arvados.gemspec
Peter Amstutz [Tue, 14 Jan 2020 21:55:49 +0000 (16:55 -0500)]
Fix glob typo to arvados.gemspec

refs #16010

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate workbench and login-sync Gemfile.Lock
Peter Amstutz [Tue, 14 Jan 2020 21:35:39 +0000 (16:35 -0500)]
Update workbench and login-sync Gemfile.Lock

refs #16010

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoClean up Gemfile & Gemfile.lock
Peter Amstutz [Tue, 14 Jan 2020 20:43:08 +0000 (15:43 -0500)]
Clean up Gemfile & Gemfile.lock

refs #16010

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoGemspec sets GIT_DIR and GIT_WORK_TREE to ensure correct gem version
Peter Amstutz [Tue, 14 Jan 2020 20:26:20 +0000 (15:26 -0500)]
Gemspec sets GIT_DIR and GIT_WORK_TREE to ensure correct gem version

refs #16010

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15823: Mention "compute node", too.
Tom Clegg [Mon, 13 Jan 2020 22:11:31 +0000 (17:11 -0500)]
15823: Mention "compute node", too.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15823: Use "instance" more consistently, note other terms.
Tom Clegg [Mon, 13 Jan 2020 22:08:40 +0000 (17:08 -0500)]
15823: Use "instance" more consistently, note other terms.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15823: Mention instance_type section.
Tom Clegg [Mon, 13 Jan 2020 22:08:16 +0000 (17:08 -0500)]
15823: Mention instance_type section.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15937-failed-to-unmount'
Tom Clegg [Mon, 13 Jan 2020 21:30:57 +0000 (16:30 -0500)]
Merge branch '15937-failed-to-unmount'

fixes #15937

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15823: Add "cloud dispatcher" API doc page.
Tom Clegg [Mon, 13 Jan 2020 15:47:06 +0000 (10:47 -0500)]
15823: Add "cloud dispatcher" API doc page.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15823: Skip slow parts of doc rendering if NO_SDK env var is set.
Tom Clegg [Mon, 13 Jan 2020 15:46:21 +0000 (10:46 -0500)]
15823: Skip slow parts of doc rendering if NO_SDK env var is set.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15823: Fix API endpoint connected to wrong handler.
Tom Clegg [Mon, 13 Jan 2020 15:45:05 +0000 (10:45 -0500)]
15823: Fix API endpoint connected to wrong handler.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16006-install-worksheet' refs #16006
Peter Amstutz [Mon, 13 Jan 2020 14:50:57 +0000 (09:50 -0500)]
Merge branch '16006-install-worksheet' refs #16006

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16006: Add checklist for SLURM install
Peter Amstutz [Mon, 13 Jan 2020 14:47:55 +0000 (09:47 -0500)]
16006: Add checklist for SLURM install

Add ClusterID to checklist

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16006: Add cloud install worksheets
Peter Amstutz [Fri, 10 Jan 2020 22:40:03 +0000 (17:40 -0500)]
16006: Add cloud install worksheets

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15942: Fix race in test case.
Tom Clegg [Wed, 8 Jan 2020 19:53:20 +0000 (14:53 -0500)]
15942: Fix race in test case.

When each call to Update from the test case was starting its own
lock-update-cancel goroutine, some of these would still be
running (and attempting to cancel the container) after the test case
had succeeded and called /database/reset -- and thus cause a different
test case to fail.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15937: Suppress errors from fusermount unless mount still exists.
Tom Clegg [Tue, 7 Jan 2020 19:30:16 +0000 (14:30 -0500)]
15937: Suppress errors from fusermount unless mount still exists.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15836: Merge branch 'master'
Tom Clegg [Tue, 7 Jan 2020 16:05:58 +0000 (11:05 -0500)]
15836: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15934-bad-token-error-message'
Tom Clegg [Tue, 7 Jan 2020 16:03:29 +0000 (11:03 -0500)]
Merge branch '15934-bad-token-error-message'

fixes #15934

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15836: Substitute configured string for "/" in WebDAV listings.
Tom Clegg [Tue, 7 Jan 2020 15:28:03 +0000 (10:28 -0500)]
15836: Substitute configured string for "/" in WebDAV listings.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15836: Refuse project/collection names that fuse/webdav can't show.
Tom Clegg [Mon, 6 Jan 2020 21:06:51 +0000 (16:06 -0500)]
15836: Refuse project/collection names that fuse/webdav can't show.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15839: Fix erroneous default for the DEBUG variable in
Ward Vandewege [Mon, 6 Jan 2020 19:39:52 +0000 (14:39 -0500)]
15839: Fix erroneous default for the DEBUG variable in
run-build-packages-one-target.sh. This broke package building for the
sso provider.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoUpdate comments/help text about config for crunch-dispatch-slurm and websockets
Peter Amstutz [Fri, 3 Jan 2020 15:27:36 +0000 (10:27 -0500)]
Update comments/help text about config for crunch-dispatch-slurm and websockets

Link to updated config.yml docs

fixes #15541
fixes #15542

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15934: Fix "bad token" error message.
Tom Clegg [Thu, 2 Jan 2020 21:18:47 +0000 (16:18 -0500)]
15934: Fix "bad token" error message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15965-docker-metadata-decode' refs #15965
Peter Amstutz [Thu, 2 Jan 2020 20:54:45 +0000 (15:54 -0500)]
Merge branch '15965-docker-metadata-decode' refs #15965

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15965: Decode as UTF-8 to avoid "not ASCII" error on Python 2
Peter Amstutz [Thu, 2 Jan 2020 20:53:56 +0000 (15:53 -0500)]
15965: Decode as UTF-8 to avoid "not ASCII" error on Python 2

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '15759-deploy-crunch-run'
Tom Clegg [Tue, 31 Dec 2019 16:43:03 +0000 (11:43 -0500)]
Merge branch '15759-deploy-crunch-run'

closes #15759

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15759: Merge branch 'master' into 15759-deploy-crunch-run
Tom Clegg [Tue, 31 Dec 2019 16:34:34 +0000 (11:34 -0500)]
15759: Merge branch 'master' into 15759-deploy-crunch-run

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoFix variable unintentionally shared by multiple goroutines in test.
Tom Clegg [Tue, 31 Dec 2019 15:18:18 +0000 (10:18 -0500)]
Fix variable unintentionally shared by multiple goroutines in test.

fixes #15953

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoUpdate default config with go generate refs #15572
Peter Amstutz [Mon, 30 Dec 2019 21:28:04 +0000 (16:28 -0500)]
Update default config with go generate refs #15572

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15759: Improve logs.
Tom Clegg [Mon, 30 Dec 2019 16:25:23 +0000 (11:25 -0500)]
15759: Improve logs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15759: Update file mode; avoid /var/run, typically mounted noexec.
Tom Clegg [Mon, 30 Dec 2019 16:09:13 +0000 (11:09 -0500)]
15759: Update file mode; avoid /var/run, typically mounted noexec.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15759: Add DeployRunnerBinary to config.
Tom Clegg [Mon, 30 Dec 2019 15:55:38 +0000 (10:55 -0500)]
15759: Add DeployRunnerBinary to config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15572-new-install-docs' refs #15572
Peter Amstutz [Mon, 30 Dec 2019 15:32:47 +0000 (10:32 -0500)]
Merge branch '15572-new-install-docs' refs #15572

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Add note about user visibility
Peter Amstutz [Mon, 30 Dec 2019 15:32:09 +0000 (10:32 -0500)]
15572: Add note about user visibility

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15759: Merge branch 'master' into 15759-deploy-crunch-run
Tom Clegg [Mon, 30 Dec 2019 15:18:15 +0000 (10:18 -0500)]
15759: Merge branch 'master' into 15759-deploy-crunch-run

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15946-collectionfs-deadlock'
Tom Clegg [Mon, 30 Dec 2019 15:16:42 +0000 (10:16 -0500)]
Merge branch '15946-collectionfs-deadlock'

fixes #15946

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15759: Deploy supervisor binary from dispatcher to worker VMs.
Tom Clegg [Mon, 30 Dec 2019 15:10:30 +0000 (10:10 -0500)]
15759: Deploy supervisor binary from dispatcher to worker VMs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch 'master' into 15572-new-install-docs
Peter Amstutz [Mon, 30 Dec 2019 15:02:36 +0000 (10:02 -0500)]
Merge branch 'master' into 15572-new-install-docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15942: Fix deadlock caused by unclosed "done" channel.
Tom Clegg [Sun, 22 Dec 2019 00:20:45 +0000 (19:20 -0500)]
15942: Fix deadlock caused by unclosed "done" channel.

Also, stop relying on the flushing goroutine to set flushing=nil when
finished; closing the channel is now enough to indicate work is done.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15942-cancel-unsatisfiable'
Tom Clegg [Sat, 21 Dec 2019 22:12:38 +0000 (17:12 -0500)]
Merge branch '15942-cancel-unsatisfiable'

refs #15942

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15942: Update test to fail more reliably when bug reappears.
Tom Clegg [Sat, 21 Dec 2019 22:07:12 +0000 (17:07 -0500)]
15942: Update test to fail more reliably when bug reappears.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15572: Many small doc tweaks as part of review.
Ward Vandewege [Fri, 20 Dec 2019 16:17:36 +0000 (11:17 -0500)]
15572: Many small doc tweaks as part of review.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoA few fixes for workbench in the way it displays the ARVADOS_API_HOST
Ward Vandewege [Thu, 19 Dec 2019 16:27:25 +0000 (11:27 -0500)]
A few fixes for workbench in the way it displays the ARVADOS_API_HOST
and ssh ProxyCommand.

refs #14812

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years ago15942: Ensure container with no suitable type is never in queue.
Tom Clegg [Thu, 19 Dec 2019 14:23:01 +0000 (09:23 -0500)]
15942: Ensure container with no suitable type is never in queue.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15942: Fix attempt to run container after deciding it cannot run.
Tom Clegg [Thu, 19 Dec 2019 04:41:21 +0000 (23:41 -0500)]
15942: Fix attempt to run container after deciding it cannot run.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15572: add note that mount tmp device_type is not implemented
Peter Amstutz [Wed, 18 Dec 2019 21:38:45 +0000 (16:38 -0500)]
15572: add note that mount tmp device_type is not implemented

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Fix healthcheck doc to refer to Services instead NodeProfiles
Peter Amstutz [Wed, 18 Dec 2019 21:36:07 +0000 (16:36 -0500)]
15572: Fix healthcheck doc to refer to Services instead NodeProfiles

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Fix Services.Workbench1 typo
Peter Amstutz [Wed, 18 Dec 2019 20:01:59 +0000 (15:01 -0500)]
15572: Fix Services.Workbench1 typo

Add redirect http-to-https blocks for workbench.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Add notes about keep-web and compute node image configuration
Peter Amstutz [Wed, 18 Dec 2019 18:22:18 +0000 (13:22 -0500)]
15572: Add notes about keep-web and compute node image configuration

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15759: Move crunch-run into arvados-server cmd.
Tom Clegg [Wed, 18 Dec 2019 16:55:32 +0000 (11:55 -0500)]
15759: Move crunch-run into arvados-server cmd.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15933-setup-uuid-param' refs #15933
Peter Amstutz [Wed, 18 Dec 2019 14:36:09 +0000 (09:36 -0500)]
Merge branch '15933-setup-uuid-param' refs #15933

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate CI url.
Ward Vandewege [Tue, 17 Dec 2019 20:54:12 +0000 (15:54 -0500)]
Update CI url.

No issue #

4 years ago15933: Remove unused openid_prefix from users/setup tests
Peter Amstutz [Tue, 17 Dec 2019 20:46:32 +0000 (15:46 -0500)]
15933: Remove unused openid_prefix from users/setup tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15933: Declare 'uuid' param on users/setup method discovery doc
Peter Amstutz [Tue, 17 Dec 2019 20:23:54 +0000 (15:23 -0500)]
15933: Declare 'uuid' param on users/setup method discovery doc

Also remove unused 'openid_prefix' parameter.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: GitSSH should have leading ssh://
Peter Amstutz [Tue, 17 Dec 2019 18:24:40 +0000 (13:24 -0500)]
15572: GitSSH should have leading ssh://

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: More information about setting up Azure credentials
Peter Amstutz [Tue, 17 Dec 2019 17:14:17 +0000 (12:14 -0500)]
15572: More information about setting up Azure credentials

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Make note that secret inputs must be submitted on command line
Peter Amstutz [Tue, 17 Dec 2019 16:59:19 +0000 (11:59 -0500)]
15572: Make note that secret inputs must be submitted on command line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Reorganize and update version migration documentation
Peter Amstutz [Tue, 17 Dec 2019 16:43:42 +0000 (11:43 -0500)]
15572: Reorganize and update version migration documentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: WebDAV ExternalURL expected to have trailing slash
Peter Amstutz [Mon, 16 Dec 2019 21:22:44 +0000 (16:22 -0500)]
15572: WebDAV ExternalURL expected to have trailing slash

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Update gitolite install instructions
Peter Amstutz [Mon, 16 Dec 2019 20:24:12 +0000 (15:24 -0500)]
15572: Update gitolite install instructions

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Install doc updates for workbench, ws, dispatcher
Peter Amstutz [Mon, 16 Dec 2019 16:58:29 +0000 (11:58 -0500)]
15572: Install doc updates for workbench, ws, dispatcher

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMove workbench packages dependencies into the packages.
Ward Vandewege [Sun, 15 Dec 2019 15:41:00 +0000 (10:41 -0500)]
Move workbench packages dependencies into the packages.

closes #15932

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years ago15572: Documentation tweaks from experience installing dev cluster
Peter Amstutz [Sun, 15 Dec 2019 05:02:02 +0000 (00:02 -0500)]
15572: Documentation tweaks from experience installing dev cluster

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Add missing file
Peter Amstutz [Fri, 13 Dec 2019 17:06:11 +0000 (12:06 -0500)]
15572: Add missing file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Passes link checking
Peter Amstutz [Fri, 13 Dec 2019 16:43:57 +0000 (11:43 -0500)]
15572: Passes link checking

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoPins signet gem version on arvados-login-sync to keep ruby 2.3 compatibility.
Lucas Di Pentima [Fri, 13 Dec 2019 15:08:30 +0000 (12:08 -0300)]
Pins signet gem version on arvados-login-sync to keep ruby 2.3 compatibility.

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago15572: Add hypothes.is annotations to docs
Peter Amstutz [Fri, 13 Dec 2019 05:06:00 +0000 (00:06 -0500)]
15572: Add hypothes.is annotations to docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Make notes on cloud/slurm dispatcher install to set up VM / compute nodes.
Peter Amstutz [Thu, 12 Dec 2019 22:32:10 +0000 (17:32 -0500)]
15572: Make notes on cloud/slurm dispatcher install to set up VM / compute nodes.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15572: Epic documentation commit
Peter Amstutz [Thu, 12 Dec 2019 22:21:56 +0000 (17:21 -0500)]
15572: Epic documentation commit

* Revise dispatcher install
* Revise shell and compute node install
* Fix up Python and CLI SDK install docs
* Refactor boilerplate sections into parameterized liquid template include

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '15922-force-legacy-api-14'
Tom Clegg [Thu, 12 Dec 2019 20:55:27 +0000 (15:55 -0500)]
Merge branch '15922-force-legacy-api-14'

refs #15922

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15922: Test for writable_by in response.
Tom Clegg [Thu, 12 Dec 2019 20:46:51 +0000 (15:46 -0500)]
15922: Test for writable_by in response.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15922: Update test to accommodate etag.
Tom Clegg [Tue, 10 Dec 2019 20:25:49 +0000 (15:25 -0500)]
15922: Update test to accommodate etag.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15922: Fix propagation of user setup and merge requests.
Tom Clegg [Tue, 10 Dec 2019 17:43:35 +0000 (12:43 -0500)]
15922: Fix propagation of user setup and merge requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>