Lucas Di Pentima [Tue, 15 Jan 2019 17:25:39 +0000 (14:25 -0300)]
14539: Encode \t & \n chars on file/dir names on collection's manifest.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 16:57:45 +0000 (11:57 -0500)]
13306: Updating get_current_container to raise when not a 404
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 16:09:11 +0000 (11:09 -0500)]
13306: Updating depreciated assertEquals
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 15:52:04 +0000 (10:52 -0500)]
13306: Updating depreciated warn function
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 14:46:50 +0000 (09:46 -0500)]
13306: Updates ArvCwlExecutor to properly convert objects to JSON in unicode
json.dumps produces a str object in python 2 (bytestring) and a str object in python 3 (unicode), resulting in incompatibility when writing to the file (expects unicode). In order to prevent using py2 and py3 specific code, the solution is to call encode, which will force the string to be bytes in both languages, then decode to unicode from there.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 15 Jan 2019 14:31:43 +0000 (11:31 -0300)]
14538: Update comment.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 13:30:53 +0000 (08:30 -0500)]
13306: Adding py2/3 unicode support to the test_job tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 14 Jan 2019 19:13:20 +0000 (14:13 -0500)]
14324: Fix API throttling header fallbacks. Add gocheck_test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 14 Jan 2019 18:04:55 +0000 (13:04 -0500)]
13306: test_submit additional fixes for py2 unicode support
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Mon, 14 Jan 2019 17:16:32 +0000 (14:16 -0300)]
Merge branch 'master' into 14539-pysdk-empty-dir
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 14 Jan 2019 16:00:12 +0000 (11:00 -0500)]
Fix arvbox demo for workbench2 no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 21:38:47 +0000 (16:38 -0500)]
13306: test_submit fixes for py2 unicode support
Makes the stdout passed to cwltool python version dependent for the submit tests. Also adds unicode specifications to calls to the log.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 11 Jan 2019 19:04:06 +0000 (14:04 -0500)]
14324: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 18:55:49 +0000 (13:55 -0500)]
13306: Adding py2 and py3 compatible byte objects for literals
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 16:22:24 +0000 (11:22 -0500)]
13306: Updated use of built in 'sorted' and a test_util bytestring
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 15:12:52 +0000 (10:12 -0500)]
13306: Added py2 and 3 compatible 'next' for test_job.TestWorkflow.test_run
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 11 Jan 2019 15:08:37 +0000 (10:08 -0500)]
14324: Use logrus in Azure driver. Fix Sirupsen->sirupsen in imports
"It's in the past been possible to import Logrus as both upper- and
lower-case. Due to the Go package environment, this caused issues in
the community and we needed a standard. Some environments experienced
problems with the upper-case variant, so the lower-case was
decided. Everything using logrus will need to use the lower-case:
github.com/sirupsen/logrus. Any package that isn't, should be
changed."
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 18:54:41 +0000 (13:54 -0500)]
13306: Fixed test_submit.TestCreateTemplate encoding
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 10 Jan 2019 18:33:50 +0000 (13:33 -0500)]
14324: Remove context from interface, use Stop() instead
Remove 'Context' passed into methods of the InstanceSet interface,
instead the AzureInstanceSet creates its own cancellable background
context. The Stop() method now cancels the context and waits for any
outstanding cloud driver work to complete before returning.
* Fix test
* Document how to run individual test cases against real cloud
* ManageBlobs runs periodically in the background
* Logging cleaned up
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:57:49 +0000 (09:57 -0500)]
13306: Fix for test_job.TestJob.test_done and test_done_use_existing_collection
Had to mock a key for the CollectionReader due to 'list' being added to arvjob.py line 249 during stage2 of finalize. The 'list' call interrupts the on demand mocking of the CollectionReader object.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:38:37 +0000 (09:38 -0500)]
13306: Fix for sdk/cwl tests.test_job.TestJob.test_run
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:16:37 +0000 (09:16 -0500)]
13306: Fixed formatting for newly introduced imports
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:06:42 +0000 (09:06 -0500)]
13306: Changes to arvados-cwl-runner code after running futurize --stage2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Wed, 9 Jan 2019 21:13:56 +0000 (16:13 -0500)]
14324: Azure driver for crunch-dispatch-cloud
* Adds context parameter to methods of InstanceSet interface that may block
* Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 Jan 2019 16:35:55 +0000 (11:35 -0500)]
14324: Azure driver WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 20:41:07 +0000 (16:41 -0400)]
13964: Fail on missing node-token tag
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 20:27:08 +0000 (16:27 -0400)]
13964: Forget the node token once the key fingerprint is known
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 20:15:55 +0000 (16:15 -0400)]
13964: Fix string pointer capture
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 20:11:12 +0000 (16:11 -0400)]
13964: Trim space
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 19:55:43 +0000 (15:55 -0400)]
13964: ssh key checking
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 19:11:58 +0000 (15:11 -0400)]
13964: ssh key verification wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 18:47:28 +0000 (14:47 -0400)]
13964: Set and check node-token WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 18:24:28 +0000 (14:24 -0400)]
13964: Tweak test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 31 Aug 2018 15:42:01 +0000 (11:42 -0400)]
13964: SSH access WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 20:38:28 +0000 (16:38 -0400)]
13964: InstanceTags type
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 20:22:12 +0000 (16:22 -0400)]
13964: VM names are namespaced. Can set/get tags.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 19:21:05 +0000 (15:21 -0400)]
13964: Don't panic running tests on stubs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 19:15:42 +0000 (15:15 -0400)]
13964: Detect and report rate limit and quota exceeded errors
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 02:42:26 +0000 (22:42 -0400)]
13964: Return Arvados instance type
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 23 Aug 2018 02:13:23 +0000 (22:13 -0400)]
13964: Full lifecycle for NICs/VHDs/VMs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 15:28:37 +0000 (11:28 -0400)]
13964: Can successfully create a VM, list existing VMs
Cleanup unused NICs. Blob cleanup in progress.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 20 Aug 2018 13:41:16 +0000 (09:41 -0400)]
13964: Azure provider WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 Jan 2019 19:39:43 +0000 (14:39 -0500)]
arvbox uses 'down: ready' as ready condition no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 Jan 2019 15:13:56 +0000 (10:13 -0500)]
Configure UTF-8 locale inside arvbox, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 8 Jan 2019 22:00:24 +0000 (17:00 -0500)]
Merge branch '14660-arvbox-workbench2' refs #14660
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 8 Jan 2019 21:57:56 +0000 (16:57 -0500)]
14660: make "sv restart" work for workbench2, prevent fail loop
Print out https url for workbench2 on start.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
ebiagiotti [Mon, 7 Jan 2019 20:38:58 +0000 (20:38 +0000)]
13306: Changes to arvados-cwl-runner code after running futurize --stage1
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
ebiagiotti [Mon, 7 Jan 2019 16:19:21 +0000 (16:19 +0000)]
13306: Adding a py3 variant of the sdk/cwl tests to run-tests.sh
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Mon, 7 Jan 2019 15:39:12 +0000 (12:39 -0300)]
14482: Fix Manifest::files_count()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 7 Jan 2019 14:12:01 +0000 (11:12 -0300)]
14482: Handle escaped chars on manifest validation.
* Escaped & unescaped chars are treated equally, except for \040.
* Empty '.' (and \056) named file tokens are accepted.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 22:28:56 +0000 (17:28 -0500)]
Merge branch '14691-suggested-ssh-config-update'
closes #14691
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Fri, 4 Jan 2019 21:37:15 +0000 (18:37 -0300)]
14482: Don't list empty dir placeholder files on collections listings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 4 Jan 2019 21:34:58 +0000 (18:34 -0300)]
14482: Enhance code readability
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 21:02:54 +0000 (16:02 -0500)]
14691: workbench update, bring in line with documentation
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 15:29:43 +0000 (10:29 -0500)]
14691: documentation update
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 4 Jan 2019 19:30:39 +0000 (14:30 -0500)]
14660: Enable workbench2 to connect to development server via websockets.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 4 Jan 2019 16:28:12 +0000 (11:28 -0500)]
14660: Proxy keep-web for https. Install root cert inside the container.
Now services inside the container can talk to each other without the
"insecure" flag.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 Jan 2019 19:53:25 +0000 (14:53 -0500)]
14660: Add workbench2 to arvbox. Improve SSL support in arvbox.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 20 Dec 2018 19:32:39 +0000 (16:32 -0300)]
14539: Escape backslash & space chars on file/dir names, with tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 00:54:07 +0000 (21:54 -0300)]
14539: Fixes fuse tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 17 Dec 2018 23:35:31 +0000 (20:35 -0300)]
14539: Tests that '\056' cannot be used as a file or directory name.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 17 Dec 2018 21:18:52 +0000 (18:18 -0300)]
14539: Persists empty directories by adding a '\056' empty file.
Also:
* Fixes test
* Errors out when trying to open a file/dir with '\056' on its path.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 19:02:05 +0000 (14:02 -0500)]
Merge branch '14360-dispatch-cloud'
closes #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 18:58:26 +0000 (13:58 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 18:57:27 +0000 (13:57 -0500)]
14360: Fix error log level on first probe after boot.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Thu, 20 Dec 2018 16:51:39 +0000 (11:51 -0500)]
9945: first set of changes.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 16:00:10 +0000 (11:00 -0500)]
14360: Test for errant Create calls after failure.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 15:03:19 +0000 (10:03 -0500)]
14360: Fix test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:44:45 +0000 (09:44 -0500)]
14360: Fix instance creation limiting.
Scheduler was claiming one of its unalloc instances only if the
container could be scheduled, so the "need new instance" condition was
not triggered for lower-priority containers needing the same instance
type.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:42:49 +0000 (09:42 -0500)]
14360: Fix panic in test when last container is run twice.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:27:37 +0000 (09:27 -0500)]
14360: Debug log when acquiring lock.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:25:56 +0000 (09:25 -0500)]
14360: Shutdown pool between tests to eliminate leaking logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 20:08:57 +0000 (15:08 -0500)]
14360: Replace OnComplete/OnCancel with ExecuteContainer callback.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 19:14:58 +0000 (14:14 -0500)]
Merge branch '14327-cwl-unnecessary-collections' refs #14327
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 19:11:23 +0000 (14:11 -0500)]
14360: Call ChooseType just once per container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 19:08:58 +0000 (14:08 -0500)]
14327: Add comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 18:54:40 +0000 (13:54 -0500)]
14360: Remove log spam.
Just don't reserve space for an image if there is no image.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 17:02:05 +0000 (14:02 -0300)]
Merge branch '14640-api-wb-activejob-upgrade'
Closes #14640
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 16:50:51 +0000 (11:50 -0500)]
Fix test_with_arvbox.sh to use https://versions.arvados.org no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 16:17:24 +0000 (13:17 -0300)]
14640: Upgrades WB rails to 4.2.11
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 16:02:41 +0000 (13:02 -0300)]
14640: Upgrades API to rails 4.2.11
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 15:02:55 +0000 (10:02 -0500)]
Merge branch 'master' into 14360-dispatch-cloud
refs #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:59:05 +0000 (02:59 -0500)]
14360: Shutdown between tests to eliminate leaking logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:27:27 +0000 (02:27 -0500)]
14360: Clean up stub driver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 04:37:47 +0000 (23:37 -0500)]
14360: Avoid overreporting instances during Create/List race.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 21:23:07 +0000 (16:23 -0500)]
14327: Don't create new collection if source has expected secondaryFiles
If all secondary files/directories are located in the same collection
as the primary file and the paths and names that are consistent with
staging, don't create a new collection.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 17 Dec 2018 20:53:43 +0000 (15:53 -0500)]
We've moved the chat/community support channel from IRC to gitter.im.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 20:14:11 +0000 (15:14 -0500)]
14360: Comment stubServer.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 17:46:54 +0000 (12:46 -0500)]
Update cwltool refs #14510
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:49:43 +0000 (13:49 -0500)]
14360: Locking comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:47:14 +0000 (13:47 -0500)]
14360: Fix log spam on normal race condition.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 16:31:52 +0000 (11:31 -0500)]
Update README and community doc page. refs #14617
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 15:57:40 +0000 (10:57 -0500)]
14360: Comment TestDispatchToStubDriver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 20:59:34 +0000 (15:59 -0500)]
11419: Read JSON files in binary mode.
Files opened in text mode do not have a size() method.
refs #11419
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 14 Dec 2018 21:36:50 +0000 (16:36 -0500)]
Set DBName correctly for arvbox demo, hopefully fix ci.commonwl.org
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 17:54:00 +0000 (12:54 -0500)]
Merge branch '14596-check-container-locked'
closes #14596
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Fri, 14 Dec 2018 16:17:23 +0000 (13:17 -0300)]
no issue # Fix and update rvm GPG Key signature issue on test dockerfiles
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:03:29 +0000 (13:03 -0300)]
Merge branch '13006-sync-groups-is_a-filter'
Closes #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:02:46 +0000 (13:02 -0300)]
Merge branch '13006-api-is_a-filter'
Refs #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 15:54:49 +0000 (12:54 -0300)]
Merge branch '13006-api-is_a-filter' into 13006-sync-groups-is_a-filter
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
projects / arvados.git / log