14327: Don't create new collection if source has expected secondaryFiles
authorPeter Amstutz <pamstutz@veritasgenetics.com>
Mon, 17 Dec 2018 21:23:07 +0000 (16:23 -0500)
committerPeter Amstutz <pamstutz@veritasgenetics.com>
Mon, 17 Dec 2018 22:42:05 +0000 (17:42 -0500)
commit06bcc58df3e531f4af2bbc3ccf13aacdac068623
tree9d9103a61267b1d180e403634d29ea0dc7142d94
parent79379f5d68466922964d71f03d9bbe1b918f6252
14327: Don't create new collection if source has expected secondaryFiles

If all secondary files/directories are located in the same collection
as the primary file and the paths and names that are consistent with
staging, don't create a new collection.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
sdk/cwl/arvados_cwl/pathmapper.py
sdk/cwl/tests/test_pathmapper.py