arvados.git
6 years ago13939: In groups#contents, apply unprefixed orders to all tables.
Tom Clegg [Wed, 1 Aug 2018 17:40:05 +0000 (13:40 -0400)]
13939: In groups#contents, apply unprefixed orders to all tables.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13939: Test orders with no table name qualifier.
Tom Clegg [Wed, 1 Aug 2018 17:13:50 +0000 (13:13 -0400)]
13939: Test orders with no table name qualifier.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13497-controller'
Tom Clegg [Wed, 1 Aug 2018 13:14:14 +0000 (09:14 -0400)]
Merge branch '13497-controller'

refs #13497

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13198-keep-web-metrics'
Tom Clegg [Tue, 31 Jul 2018 18:04:39 +0000 (14:04 -0400)]
Merge branch '13198-keep-web-metrics'

refs #13198

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13892-deprecate-jobs-api' closes #13892
Peter Amstutz [Tue, 31 Jul 2018 17:51:05 +0000 (13:51 -0400)]
Merge branch '13892-deprecate-jobs-api' closes #13892

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13892: Make warning more obvious.
Peter Amstutz [Tue, 31 Jul 2018 17:26:14 +0000 (13:26 -0400)]
13892: Make warning more obvious.

Link to information about migrating for both users and admins.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13892: Update disable_api_methods with the full list
Peter Amstutz [Tue, 31 Jul 2018 15:40:28 +0000 (11:40 -0400)]
13892: Update disable_api_methods with the full list

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13497: Link issues and commit hashes to redmine.
Tom Clegg [Tue, 31 Jul 2018 15:31:55 +0000 (11:31 -0400)]
13497: Link issues and commit hashes to redmine.

"#1234" and "commit:foo" markup doesn't work here like it did on the
redmine wiki where the content came from.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Add controller to upgrade notes.
Tom Clegg [Tue, 31 Jul 2018 15:26:36 +0000 (11:26 -0400)]
13497: Add controller to upgrade notes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Add controller to install docs.
Tom Clegg [Mon, 30 Jul 2018 19:53:45 +0000 (15:53 -0400)]
13497: Add controller to install docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13198: Add cache stats to metrics.
Tom Clegg [Mon, 30 Jul 2018 16:03:07 +0000 (12:03 -0400)]
13198: Add cache stats to metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13690-composer-user-guide' closes #13690
Peter Amstutz [Mon, 30 Jul 2018 16:53:54 +0000 (12:53 -0400)]
Merge branch '13690-composer-user-guide' closes #13690

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13690: Add/fix links
Peter Amstutz [Mon, 30 Jul 2018 14:35:37 +0000 (10:35 -0400)]
13690: Add/fix links

* Fix CWL user guide link
* Link from "Developing Workflows" to Composer tutorial
* More detail about what goes in "Docker Repository" field

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13690: Fill in some missing steps.
Peter Amstutz [Fri, 27 Jul 2018 17:57:11 +0000 (13:57 -0400)]
13690: Fill in some missing steps.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13920-arvados-gem-with-newer-rubies'
Lucas Di Pentima [Thu, 26 Jul 2018 20:41:33 +0000 (17:41 -0300)]
Merge branch '13920-arvados-gem-with-newer-rubies'
Closes #13920

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13920: Fixes google-api-client gem issue with ruby 2.3.7+
Lucas Di Pentima [Thu, 26 Jul 2018 19:45:23 +0000 (16:45 -0300)]
13920: Fixes google-api-client gem issue with ruby 2.3.7+

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13690: Walkthrough of Composer on Arvados
Peter Amstutz [Thu, 26 Jul 2018 18:31:53 +0000 (14:31 -0400)]
13690: Walkthrough of Composer on Arvados

* Creating a new git repository through Arvados to store the workflow
* Creating CommandLineTools for “sort” and “uniq”
* Creating a Workflow which uses “sort” and “uniq” to remove duplicate lines from a text file
* Submitting the Workflow to run on Arvados

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13910-arvados-gem-retrieval'
Lucas Di Pentima [Thu, 26 Jul 2018 18:28:18 +0000 (15:28 -0300)]
Merge branch '13910-arvados-gem-retrieval'
Closes #13910

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoFix a few typos.
Ward Vandewege [Thu, 26 Jul 2018 16:22:12 +0000 (12:22 -0400)]
Fix a few typos.

refs #13791

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoMerge branch '13791-monitoring-docs' closes #13791
Peter Amstutz [Thu, 26 Jul 2018 13:54:10 +0000 (09:54 -0400)]
Merge branch '13791-monitoring-docs' closes #13791

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13892: Add jobs API deprecation notice to arvados-cwl-runner
Peter Amstutz [Thu, 26 Jul 2018 13:42:49 +0000 (09:42 -0400)]
13892: Add jobs API deprecation notice to arvados-cwl-runner

Also document how to disable the jobs API so that a-c-r selects the
containers API automatically.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '12444-tmpdir-monitoring'
Lucas Di Pentima [Wed, 25 Jul 2018 20:38:09 +0000 (17:38 -0300)]
Merge branch '12444-tmpdir-monitoring'
Closes #12444

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13910: Fixes arvados gem dependency on arvados-cli & arvados-login-sync
Lucas Di Pentima [Wed, 25 Jul 2018 20:27:27 +0000 (17:27 -0300)]
13910: Fixes arvados gem dependency on arvados-cli & arvados-login-sync

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoarvbox uses keep config file instead of cli switches. no issue #
Peter Amstutz [Wed, 25 Jul 2018 19:18:48 +0000 (15:18 -0400)]
arvbox uses keep config file instead of cli switches.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13570-crunch-ram-doc' closes #13570
Peter Amstutz [Wed, 25 Jul 2018 19:10:53 +0000 (15:10 -0400)]
Merge branch '13570-crunch-ram-doc' closes #13570

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13570: Doc tweaks
Peter Amstutz [Wed, 25 Jul 2018 19:09:38 +0000 (15:09 -0400)]
13570: Doc tweaks

* Capitalize "Keep"
* Clarify usage of cgroups
* Clarify "Available compute node types"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13570: Add formulas. Add link from cwl-style to crunch discussion.
Peter Amstutz [Tue, 24 Jul 2018 20:19:40 +0000 (16:19 -0400)]
13570: Add formulas.  Add link from cwl-style to crunch discussion.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12444: Allow crunch-run to provide tmpdir to crunchstat
Lucas Di Pentima [Tue, 24 Jul 2018 20:15:21 +0000 (17:15 -0300)]
12444: Allow crunch-run to provide tmpdir to crunchstat

Also, get the temp dir from $TMPDIR if not provided, fix the 'used'
space calculation, and report which dir is being monitored.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13791: Tweak doc ordering.
Peter Amstutz [Tue, 24 Jul 2018 19:09:18 +0000 (15:09 -0400)]
13791: Tweak doc ordering.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13791: More detail about monitoring
Peter Amstutz [Tue, 24 Jul 2018 19:02:52 +0000 (15:02 -0400)]
13791: More detail about monitoring

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12444: Adds tmpdir stats to crunchstat reporting
Lucas Di Pentima [Tue, 24 Jul 2018 14:31:29 +0000 (11:31 -0300)]
12444: Adds tmpdir stats to crunchstat reporting

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '13888-cli-dependency-on-api'
Lucas Di Pentima [Tue, 24 Jul 2018 17:07:31 +0000 (14:07 -0300)]
Merge branch '13888-cli-dependency-on-api'
Closes #13888

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13570: Add section describing RAM allocation behavior.
Peter Amstutz [Tue, 24 Jul 2018 15:53:51 +0000 (11:53 -0400)]
13570: Add section describing RAM allocation behavior.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13888: Adds arvados-cli dependency back on API server
Lucas Di Pentima [Tue, 24 Jul 2018 15:43:22 +0000 (12:43 -0300)]
13888: Adds arvados-cli dependency back on API server

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoArvbox fix correct permissions to stop one-shot services. no issue #
Peter Amstutz [Mon, 23 Jul 2018 18:33:02 +0000 (14:33 -0400)]
Arvbox fix correct permissions to stop one-shot services. no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13791: Admin documentation for monitoring wip
Peter Amstutz [Mon, 23 Jul 2018 15:29:28 +0000 (11:29 -0400)]
13791: Admin documentation for monitoring wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13791: Health check endpoint docs wip
Peter Amstutz [Mon, 23 Jul 2018 13:31:51 +0000 (09:31 -0400)]
13791: Health check endpoint docs wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13546-crunch1-timeout' refs #13546
Peter Amstutz [Mon, 23 Jul 2018 13:33:44 +0000 (09:33 -0400)]
Merge branch '13546-crunch1-timeout' refs #13546

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13879-arvados-server' closes #13879
Peter Amstutz [Fri, 20 Jul 2018 20:52:52 +0000 (16:52 -0400)]
Merge branch '13879-arvados-server' closes #13879

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13879: Fix cut and paste typo.
Peter Amstutz [Fri, 20 Jul 2018 20:51:03 +0000 (16:51 -0400)]
13879: Fix cut and paste typo.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13546: crunch-job has timeout on srun_sync
Peter Amstutz [Fri, 20 Jul 2018 20:42:56 +0000 (16:42 -0400)]
13546: crunch-job has timeout on srun_sync

* Add global timeout to srun_sync, default 15 minutes, terminates
  job if a call to srun_sync exceeds the timeout.

* Default can be adjusted by setting CRUNCH_SRUN_SYNC_TIMEOUT in the
  environment of crunch_dispatch.rb (value is in seconds)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13851-wb-multisite-search'
Lucas Di Pentima [Fri, 20 Jul 2018 17:00:47 +0000 (14:00 -0300)]
Merge branch '13851-wb-multisite-search'
Closes #13851

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '13493-federation-proxy'
Tom Clegg [Fri, 20 Jul 2018 15:11:36 +0000 (11:11 -0400)]
Merge branch '13493-federation-proxy'

refs #13493

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13493: Merge branch 'master' into 13493-federation-proxy
Tom Clegg [Fri, 20 Jul 2018 14:25:45 +0000 (10:25 -0400)]
13493: Merge branch 'master' into 13493-federation-proxy

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13879: Arvbox support for arvados-controller
Peter Amstutz [Thu, 19 Jul 2018 22:15:03 +0000 (18:15 -0400)]
13879: Arvbox support for arvados-controller

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13788-concurrent-map-write'
Tom Clegg [Thu, 19 Jul 2018 20:56:25 +0000 (16:56 -0400)]
Merge branch '13788-concurrent-map-write'

fixes #13788

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13198-keep-web-metrics'
Tom Clegg [Thu, 19 Jul 2018 20:15:47 +0000 (16:15 -0400)]
Merge branch '13198-keep-web-metrics'

refs #13198

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoReflect the new name and url for the public evaluation and trial instance,
Ward Vandewege [Thu, 19 Jul 2018 19:55:18 +0000 (15:55 -0400)]
Reflect the new name and url for the public evaluation and trial instance,
Arvados Playground.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years ago13788: Fix concurrent map write.
Tom Clegg [Thu, 19 Jul 2018 19:26:02 +0000 (15:26 -0400)]
13788: Fix concurrent map write.

Reading multiple pages into the same ContainerList was reusing
embedded maps that had been passed to other goroutines.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13851: Reverted use of discoveryDoc() on findAPI()
Lucas Di Pentima [Thu, 19 Jul 2018 18:10:44 +0000 (15:10 -0300)]
13851: Reverted use of discoveryDoc() on findAPI()

Also checking adding a '/' to baseURL on discoveryDoc when needed.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '13868-invalid-node-size' refs #13868
Peter Amstutz [Thu, 19 Jul 2018 16:09:44 +0000 (12:09 -0400)]
Merge branch '13868-invalid-node-size' refs #13868

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13868: Fallback behavior when arvados_node_size tag is missing
Peter Amstutz [Thu, 19 Jul 2018 15:12:05 +0000 (11:12 -0400)]
13868: Fallback behavior when arvados_node_size tag is missing

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13645-fix-arvados-api-host-insecure'
Fuad Muhic [Thu, 19 Jul 2018 14:59:19 +0000 (16:59 +0200)]
Merge branch '13645-fix-arvados-api-host-insecure'

refs #13645

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agorefs #13667 "Merge branch '13667-add-version-file'".
Fernando Monserrat [Thu, 19 Jul 2018 14:47:18 +0000 (11:47 -0300)]
refs #13667 "Merge branch '13667-add-version-file'".
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years agoMerge branch '13399-nice-logs'
Tom Clegg [Thu, 19 Jul 2018 01:44:23 +0000 (21:44 -0400)]
Merge branch '13399-nice-logs'

refs #13399

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13804-no-shutdown-wanted-nodes' refs #13804
Peter Amstutz [Wed, 18 Jul 2018 18:02:40 +0000 (14:02 -0400)]
Merge branch '13804-no-shutdown-wanted-nodes' refs #13804

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoremove trailing white space from all files
Fuad Muhic [Wed, 18 Jul 2018 10:43:20 +0000 (12:43 +0200)]
remove trailing white space from all files

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoadd tests for exec and getConnection methods in HttpRequest class
Fuad Muhic [Wed, 18 Jul 2018 10:36:41 +0000 (12:36 +0200)]
add tests for exec and getConnection methods in HttpRequest class

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago13399: Link to wiki in warning message.
Tom Clegg [Tue, 17 Jul 2018 21:04:05 +0000 (17:04 -0400)]
13399: Link to wiki in warning message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13399: Recognize held jobs with priority between 1 and 20K.
Tom Clegg [Tue, 17 Jul 2018 19:32:45 +0000 (15:32 -0400)]
13399: Recognize held jobs with priority between 1 and 20K.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13399: If slurm refuses to renice past 10K, stop trying.
Tom Clegg [Tue, 3 Jul 2018 21:03:11 +0000 (17:03 -0400)]
13399: If slurm refuses to renice past 10K, stop trying.

Fixes log spam.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch 'master' into 13804-no-shutdown-wanted-nodes
Peter Amstutz [Tue, 17 Jul 2018 20:55:52 +0000 (16:55 -0400)]
Merge branch 'master' into 13804-no-shutdown-wanted-nodes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13804: Update comments for comments for "consecutive_idle_count"
Peter Amstutz [Tue, 17 Jul 2018 20:53:31 +0000 (16:53 -0400)]
13804: Update comments for comments for "consecutive_idle_count"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13803-oj-gem-malloc-bug'
Lucas Di Pentima [Tue, 17 Jul 2018 19:19:23 +0000 (16:19 -0300)]
Merge branch '13803-oj-gem-malloc-bug'
Closes #13803

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13804: Fix tests
Peter Amstutz [Tue, 17 Jul 2018 18:47:01 +0000 (14:47 -0400)]
13804: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13198: Document metrics endpoints.
Tom Clegg [Tue, 17 Jul 2018 18:17:47 +0000 (14:17 -0400)]
13198: Document metrics endpoints.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoFix typo.
Ward Vandewege [Tue, 17 Jul 2018 17:14:44 +0000 (13:14 -0400)]
Fix typo.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoMerge branch '13822-nm-delayed-daemon' refs #13822
Peter Amstutz [Tue, 17 Jul 2018 15:40:38 +0000 (11:40 -0400)]
Merge branch '13822-nm-delayed-daemon' refs #13822

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13198: Track & serve keep-web metrics.
Tom Clegg [Tue, 17 Jul 2018 15:38:45 +0000 (11:38 -0400)]
13198: Track & serve keep-web metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch 'master' into 13822-nm-delayed-daemon
Peter Amstutz [Tue, 17 Jul 2018 14:26:29 +0000 (10:26 -0400)]
Merge branch 'master' into 13822-nm-delayed-daemon

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13804: Smarter shutdown behavior WIP
Peter Amstutz [Tue, 17 Jul 2018 13:51:23 +0000 (09:51 -0400)]
13804: Smarter shutdown behavior WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13803: Fix behavior change on Oj 3.x
Lucas Di Pentima [Mon, 16 Jul 2018 23:43:38 +0000 (20:43 -0300)]
13803: Fix behavior change on Oj 3.x

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13804: Try to cancel pending shutdowns if nodes are needed
Peter Amstutz [Mon, 16 Jul 2018 21:19:53 +0000 (17:19 -0400)]
13804: Try to cancel pending shutdowns if nodes are needed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13803: Re-enable Oj's rails optimizations & fix time format test failures.
Lucas Di Pentima [Mon, 16 Jul 2018 20:52:52 +0000 (17:52 -0300)]
13803: Re-enable Oj's rails optimizations & fix time format test failures.

There's one failing test pending on collection controller: when asking for
the index with select="" the followin exception is being masked by
load_limit_offset_order_params():

JSON::ParserError: Empty input at line 1, column 1 [parse.c:928]

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13804: Node must report as "idle" two consecutive times
Peter Amstutz [Mon, 16 Jul 2018 20:05:02 +0000 (16:05 -0400)]
13804: Node must report as "idle" two consecutive times

Gives idle nodes 1 poll period to be allocated by slurm before
becoming candidates for shutdown.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13198: Test case for keep-web metrics.
Tom Clegg [Mon, 16 Jul 2018 19:01:42 +0000 (15:01 -0400)]
13198: Test case for keep-web metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13822: Don't call list_sizes() in cloud client constructor.
Peter Amstutz [Mon, 16 Jul 2018 18:54:35 +0000 (14:54 -0400)]
13822: Don't call list_sizes() in cloud client constructor.

Also make subscribe() call to SetupActor asynchronous.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13803: Remove oj_mimic_json gem.
Lucas Di Pentima [Mon, 16 Jul 2018 18:47:14 +0000 (15:47 -0300)]
13803: Remove oj_mimic_json gem.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13493: Update CORS OPTIONS test.
Tom Clegg [Mon, 16 Jul 2018 15:40:55 +0000 (11:40 -0400)]
13493: Update CORS OPTIONS test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13198: Move metrics to httpserver package.
Tom Clegg [Mon, 16 Jul 2018 14:42:23 +0000 (10:42 -0400)]
13198: Move metrics to httpserver package.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13493: Fix proxy-redirect implementation.
Tom Clegg [Mon, 16 Jul 2018 13:55:51 +0000 (09:55 -0400)]
13493: Fix proxy-redirect implementation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13799-install-doc-sections' refs #13799
Peter Amstutz [Mon, 16 Jul 2018 13:50:27 +0000 (09:50 -0400)]
Merge branch '13799-install-doc-sections' refs #13799

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13493: Merge branch 'master' into 13493-federation-proxy
Tom Clegg [Mon, 16 Jul 2018 13:46:23 +0000 (09:46 -0400)]
13493: Merge branch 'master' into 13493-federation-proxy

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13497-controller'
Tom Clegg [Fri, 13 Jul 2018 20:31:11 +0000 (16:31 -0400)]
Merge branch '13497-controller'

refs #13497

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Merge branch 'master' into 13497-controller
Tom Clegg [Fri, 13 Jul 2018 20:30:48 +0000 (16:30 -0400)]
13497: Merge branch 'master' into 13497-controller

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13667: clean up
Fernando Monserrat [Fri, 13 Jul 2018 19:10:56 +0000 (16:10 -0300)]
13667: clean up
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Fri, 13 Jul 2018 18:01:03 +0000 (15:01 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13497: Add comments on odd Nginx config. Less confusing vhost name.
Tom Clegg [Fri, 13 Jul 2018 17:24:07 +0000 (13:24 -0400)]
13497: Add comments on odd Nginx config. Less confusing vhost name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Fri, 13 Jul 2018 15:44:55 +0000 (12:44 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13497: Improve nginx logging in test suite.
Tom Clegg [Fri, 13 Jul 2018 14:51:43 +0000 (10:51 -0400)]
13497: Improve nginx logging in test suite.

Include request scheme://host:port, elapsed time, and upstream server
type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Avoid misdirecting POST to GET when request has double slash.
Tom Clegg [Thu, 12 Jul 2018 20:50:59 +0000 (16:50 -0400)]
13497: Avoid misdirecting POST to GET when request has double slash.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Use X-Forwarded-Proto as scheme for keep-web redirect URLs.
Tom Clegg [Thu, 12 Jul 2018 20:43:37 +0000 (16:43 -0400)]
13497: Use X-Forwarded-Proto as scheme for keep-web redirect URLs.

This avoids relying on the downstream proxy to rewrite redirects.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13497: Fix Rails redirect targets.
Tom Clegg [Thu, 12 Jul 2018 18:09:59 +0000 (14:09 -0400)]
13497: Fix Rails redirect targets.

Rails relies on the X-Forwarded-Proto request header, so we need to
set that in the test suite's Nginx config, like we do in the install
guide.

Also tidy up needlessly divergent proxy directives in Nginx test
config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13803: Upgrade oj to latest on workbench
Lucas Di Pentima [Fri, 13 Jul 2018 14:43:01 +0000 (11:43 -0300)]
13803: Upgrade oj to latest on workbench

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13803: Upgrade oj dependency on arvados-cli gem.
Lucas Di Pentima [Fri, 13 Jul 2018 14:34:48 +0000 (11:34 -0300)]
13803: Upgrade oj dependency on arvados-cli gem.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13803: Upgrade oj gem on API server by removing arvados-cli dependency
Lucas Di Pentima [Fri, 13 Jul 2018 14:33:41 +0000 (11:33 -0300)]
13803: Upgrade oj gem on API server by removing arvados-cli dependency

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:52:48 +0000 (17:52 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:21:44 +0000 (17:21 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:01:01 +0000 (17:01 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 19:51:13 +0000 (16:51 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>