arvados.git
9 months ago20862: Emit notice about skipping sdk/ruby-google-api-client tests.
Tom Clegg [Mon, 25 Sep 2023 15:56:48 +0000 (11:56 -0400)]
20862: Emit notice about skipping sdk/ruby-google-api-client tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months ago20862: Merge branch 'main' into 20862-google-api-client
Tom Clegg [Mon, 25 Sep 2023 15:46:36 +0000 (11:46 -0400)]
20862: Merge branch 'main' into 20862-google-api-client

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months ago20990: Add btree index on name for groups & collections 20990-name-btree
Peter Amstutz [Fri, 22 Sep 2023 20:22:44 +0000 (16:22 -0400)]
20990: Add btree index on name for groups & collections

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago15768: removed errant .only from spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 22 Sep 2023 19:55:22 +0000 (15:55 -0400)]
15768: removed errant .only from spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: process outputs no longer disappear on reload Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Fri, 22 Sep 2023 19:52:43 +0000 (15:52 -0400)]
15768: process outputs no longer disappear on reload Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20225: Correct cypress test names / add terminal newline (style)
Stephen Smith [Fri, 22 Sep 2023 14:35:34 +0000 (10:35 -0400)]
20225: Correct cypress test names / add terminal newline (style)

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

9 months ago20225: Remove unused imports / dead code
Stephen Smith [Fri, 22 Sep 2023 14:35:13 +0000 (10:35 -0400)]
20225: Remove unused imports / dead code

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

9 months ago20225: Add subdirectory selection support to directory array picker
Stephen Smith [Fri, 22 Sep 2023 14:12:42 +0000 (10:12 -0400)]
20225: Add subdirectory selection support to directory array picker

Adds cascade flag to tree picker to disable recursive directory selection

Reworks initProjectsTreePicker to support initializing multiple selections.
Loads each selection's ancestor tree in parallel, combines updates to same tree
pickers before inserting the ancestor tree, then loads necessary collections in
parallel

Changes checkbox visibility logic to show collection selection checkbox even
when collection is not loaded/expanded when cascade mode is off - since the
selection won't cascade there is no need to require the collection to be opened

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

9 months ago20225: Add subdirectory selection support to directory input
Stephen Smith [Thu, 21 Sep 2023 19:02:10 +0000 (15:02 -0400)]
20225: Add subdirectory selection support to directory input

Converts getFileOperationLocation into a dispatchable helper so it can access
the store to augment FileOperationLocations with a PDH

Converts DirectoryTreePickerField into a connected class component in order to
use getFileOperationLocation

Change DirectoryInputComponent to include directories in the picker and use
getFileOperationLocation to pass FileOperationLocation instead of Collection
objects so that the subpath within the collection can be embedded in the
Directory object

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

9 months ago15768: fixed search test spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Thu, 21 Sep 2023 18:57:37 +0000 (14:57 -0400)]
15768: fixed search test spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: fixed search test spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Thu, 21 Sep 2023 17:25:59 +0000 (13:25 -0400)]
15768: fixed search test spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months agoFix 2.7.0 date in upgrading notes, refs #20769 2.7.0
Peter Amstutz [Thu, 21 Sep 2023 13:14:54 +0000 (09:14 -0400)]
Fix 2.7.0 date in upgrading notes, refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoNeed to have nvidia installed so singularity detects it
Peter Amstutz [Wed, 20 Sep 2023 21:15:20 +0000 (17:15 -0400)]
Need to have nvidia installed so singularity detects it

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoCheck out singularity from git to get submodules
Peter Amstutz [Wed, 20 Sep 2023 21:08:10 +0000 (17:08 -0400)]
Check out singularity from git to get submodules

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoAdd singularity build deps libglib2.0-dev and libseccomp-dev to packer
Peter Amstutz [Wed, 20 Sep 2023 20:56:15 +0000 (16:56 -0400)]
Add singularity build deps libglib2.0-dev and libseccomp-dev to packer

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoSet 2.7.0 release date, refs #20769
Peter Amstutz [Wed, 20 Sep 2023 17:23:22 +0000 (13:23 -0400)]
Set 2.7.0 release date, refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago15768: fixed copytoclipboard from search results Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Wed, 20 Sep 2023 16:43:22 +0000 (12:43 -0400)]
15768: fixed copytoclipboard from search results Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: added manual form submit in searchbar spec Arvados-DCO-1.1-Signed-off-by:...
Lisa Knox [Wed, 20 Sep 2023 14:56:16 +0000 (10:56 -0400)]
15768: added manual form submit in searchbar spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: virtual machine spec pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Wed, 20 Sep 2023 13:18:00 +0000 (09:18 -0400)]
15768: virtual machine spec pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: fixed rerun bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii...
Lisa Knox [Tue, 19 Sep 2023 22:33:57 +0000 (18:33 -0400)]
15768: fixed rerun bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months agoFix cwltest version pin, refs #20973
Peter Amstutz [Tue, 19 Sep 2023 21:24:47 +0000 (17:24 -0400)]
Fix cwltest version pin, refs #20973

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago15768: all favorites specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Mon, 18 Sep 2023 23:05:53 +0000 (19:05 -0400)]
15768: all favorites specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: all collection specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Mon, 18 Sep 2023 19:58:21 +0000 (15:58 -0400)]
15768: all collection specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: all collection specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Mon, 18 Sep 2023 17:02:48 +0000 (13:02 -0400)]
15768: all collection specs pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months agoMerge branch '20973-cwltest' refs #20973
Peter Amstutz [Mon, 18 Sep 2023 15:29:27 +0000 (11:29 -0400)]
Merge branch '20973-cwltest' refs #20973

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoMerge branch '20497-updating-wgs-tutorial'
Brett Smith [Mon, 18 Sep 2023 14:45:02 +0000 (10:45 -0400)]
Merge branch '20497-updating-wgs-tutorial'

Closes #20497.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Typo fixes 20497-updating-wgs-tutorial
Brett Smith [Mon, 18 Sep 2023 14:44:04 +0000 (10:44 -0400)]
20497: Typo fixes

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Give brief instructions for reviewing subprocess output
Brett Smith [Mon, 18 Sep 2023 14:35:42 +0000 (10:35 -0400)]
20497: Give brief instructions for reviewing subprocess output

This was previously discussed in the same paragraph as the main workflow
download collection. Moving it here means we don't jump back and forth
as much between the main workflow process and a subprocess.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Clarify collection view/download
Brett Smith [Mon, 18 Sep 2023 13:37:52 +0000 (09:37 -0400)]
20497: Clarify collection view/download

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Clean up section 5 opening paragraph
Brett Smith [Mon, 18 Sep 2023 13:34:55 +0000 (09:34 -0400)]
20497: Clean up section 5 opening paragraph

There used to be multiple navigation options listed here. Now that
there's only one, the introduction needs to be updated to match.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months agoPin cwltest version that we package, refs #20973 20973-cwltest
Peter Amstutz [Mon, 18 Sep 2023 13:32:11 +0000 (09:32 -0400)]
Pin cwltest version that we package, refs #20973

The subsequent release of cwltest confirms that files exist on disk,
since our files are in Keep, all the tests fail.  We should add
[optional] Arvados support to cwltest so it can access Keep but for
the time being just package the last working version.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20497: Direct the reader to the tutorial project via Public Favorites
Brett Smith [Mon, 18 Sep 2023 13:31:14 +0000 (09:31 -0400)]
20497: Direct the reader to the tutorial project via Public Favorites

Unfortunately searching for the project raises a couple of issues:

* The search results return two copies of the project, one from pirca
  and one from jutro. If the reader picks the jutro one, they'll be
  prompted to log in again, losing their progress and kicking them off the
  happy path.

* The search results also return the finished demo workflow process we
  publish for people, "(start here) Example WGS processing workflow". This
  is attractive to people because it says "(start here)", has a bright
  green "Completed" badge next to it, and the difference between a process
  and a project may not be clear to people who are just getting started
  with Arvados.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Add missing paragraph break
Brett Smith [Mon, 18 Sep 2023 13:29:24 +0000 (09:29 -0400)]
20497: Add missing paragraph break

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20497: Make button text consistent with Workbench 2 UI
Brett Smith [Mon, 18 Sep 2023 13:28:20 +0000 (09:28 -0400)]
20497: Make button text consistent with Workbench 2 UI

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months agoMerge branch '20955-log-update-doc' refs #20955
Peter Amstutz [Mon, 18 Sep 2023 13:21:13 +0000 (09:21 -0400)]
Merge branch '20955-log-update-doc' refs #20955

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20955: Typo fixes throughout 20955-log-update-doc
Brett Smith [Mon, 18 Sep 2023 02:47:57 +0000 (22:47 -0400)]
20955: Typo fixes throughout

* "superceded"→"superseded"
* "via[d] the" repetition
* "database" echoed twice in one sentence
* Link hardcoded to doc.arvados.org→site.baseurl

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago15768: collection spec passes Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Sun, 17 Sep 2023 22:19:10 +0000 (18:19 -0400)]
15768: collection spec passes Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: get_items on single collection copy Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Sun, 17 Sep 2023 21:12:21 +0000 (17:12 -0400)]
15768: get_items on single collection copy Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: fixed dialog not closing on single collection copy Arvados-DCO-1.1-Signed...
Lisa Knox [Sun, 17 Sep 2023 21:07:07 +0000 (17:07 -0400)]
15768: fixed dialog not closing on single collection copy Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20955: Update documentation about the new and legacy container logging systems
Peter Amstutz [Fri, 15 Sep 2023 20:47:12 +0000 (16:47 -0400)]
20955: Update documentation about the new and legacy container logging systems

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20955: Reorder upgrade notes in rough order of disruptiveness
Peter Amstutz [Fri, 15 Sep 2023 17:47:51 +0000 (13:47 -0400)]
20955: Reorder upgrade notes in rough order of disruptiveness

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoAdd note about api_client_authorization deprecated fields refs #20951
Peter Amstutz [Fri, 15 Sep 2023 15:11:07 +0000 (11:11 -0400)]
Add note about api_client_authorization deprecated fields refs #20951

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoMerge branch '19359-optional-enum' refs #19359
Peter Amstutz [Fri, 15 Sep 2023 14:03:21 +0000 (10:03 -0400)]
Merge branch '19359-optional-enum' refs #19359

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago19359: Can select empty item to clear optional enum input
Peter Amstutz [Thu, 14 Sep 2023 21:06:11 +0000 (17:06 -0400)]
19359: Can select empty item to clear optional enum input

Sets the field value to null, which means "use default value" in CWL.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months agoMerge branch '20926-installer-pg-client-version'. Closes #20926
Lucas Di Pentima [Thu, 14 Sep 2023 21:04:06 +0000 (18:04 -0300)]
Merge branch '20926-installer-pg-client-version'. Closes #20926

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months ago20926: Makes regex for postgres.client state more strict. 20926-installer-pg-client-version
Lucas Di Pentima [Thu, 14 Sep 2023 21:02:44 +0000 (18:02 -0300)]
20926: Makes regex for postgres.client state more strict.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months agoMerge branch '20932-wb2-docs'
Brett Smith [Thu, 14 Sep 2023 16:00:42 +0000 (12:00 -0400)]
Merge branch '20932-wb2-docs'

Closes #20932.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago15768: testing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Thu, 14 Sep 2023 15:18:04 +0000 (11:18 -0400)]
15768: testing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20926: Sets default PG version when when using single host deployment.
Lucas Di Pentima [Thu, 14 Sep 2023 14:46:30 +0000 (11:46 -0300)]
20926: Sets default PG version when when using single host deployment.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months ago15768: testing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Thu, 14 Sep 2023 14:44:48 +0000 (10:44 -0400)]
15768: testing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20926: Sets PostgreSQL v15 the default version.
Lucas Di Pentima [Thu, 14 Sep 2023 14:23:00 +0000 (11:23 -0300)]
20926: Sets PostgreSQL v15 the default version.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months ago15768: fixed 422 err showing in browser Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Thu, 14 Sep 2023 14:10:42 +0000 (10:10 -0400)]
15768: fixed 422 err showing in browser Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: fixed checkbox undefined Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Thu, 14 Sep 2023 01:25:02 +0000 (21:25 -0400)]
15768: fixed checkbox undefined Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago15768: fixed double error messages Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Wed, 13 Sep 2023 23:35:58 +0000 (19:35 -0400)]
15768: fixed double error messages Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20926: Requires manually setting PG version when not using the 'database' role.
Lucas Di Pentima [Wed, 13 Sep 2023 22:27:13 +0000 (19:27 -0300)]
20926: Requires manually setting PG version when not using the 'database' role.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months ago15768: all tests pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Wed, 13 Sep 2023 21:00:43 +0000 (17:00 -0400)]
15768: all tests pass Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months agoMerge branch '20930-websocket'
Tom Clegg [Wed, 13 Sep 2023 19:53:59 +0000 (15:53 -0400)]
Merge branch '20930-websocket'

fixes #20930
fixes #20507

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months agoMerge branch '20850-wb1-deprecated' refs #20850
Peter Amstutz [Wed, 13 Sep 2023 19:28:12 +0000 (15:28 -0400)]
Merge branch '20850-wb1-deprecated' refs #20850

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20850: Fix capitalization and indentation
Peter Amstutz [Wed, 13 Sep 2023 19:26:28 +0000 (15:26 -0400)]
20850: Fix capitalization and indentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20932: Update un/trash instructions for Workbench 2 20932-wb2-docs
Brett Smith [Wed, 13 Sep 2023 18:29:43 +0000 (14:29 -0400)]
20932: Update un/trash instructions for Workbench 2

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago20932/20850/20890: Remove switch instructions from Workbench migration guide
Brett Smith [Wed, 13 Sep 2023 18:16:19 +0000 (14:16 -0400)]
20932/20850/20890: Remove switch instructions from Workbench migration guide

The switch feature has been removed from Workbench 2, and a deprecation
notice in Workbench 1 now prominently leads you to switch. See #20890
and #20850, respectively.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago15768: last test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Wed, 13 Sep 2023 18:16:05 +0000 (14:16 -0400)]
15768: last test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months ago20497: Updating documentation
Alex Coleman [Wed, 13 Sep 2023 04:24:09 +0000 (22:24 -0600)]
20497: Updating documentation

Updating screenshots, adding additional screenshot, rewording several sections, and adding more relevant
information for Workbench2.

Arvados-DCO-1.1-Signed-off-by: Alex Coleman <alex.coleman@curii.com>

9 months ago20926: Allows the database version to be configurable from local.params.
Lucas Di Pentima [Tue, 12 Sep 2023 22:35:36 +0000 (19:35 -0300)]
20926: Allows the database version to be configurable from local.params.

Also, installs postgresql-client on the controller nodes from the salt
formula, so that its version matches the configured value.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

9 months ago20840: Typo fixes.
Brett Smith [Tue, 12 Sep 2023 21:53:32 +0000 (17:53 -0400)]
20840: Typo fixes.

Refs #20840.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

9 months ago15768: all but one test passing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Tue, 12 Sep 2023 19:48:18 +0000 (15:48 -0400)]
15768: all but one test passing Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

9 months agoFix flaky dispatchcloud test.
Tom Clegg [Tue, 12 Sep 2023 17:52:24 +0000 (13:52 -0400)]
Fix flaky dispatchcloud test.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months agoMerge branch '20840-api-deprecate-notice' refs #20840
Peter Amstutz [Tue, 12 Sep 2023 15:46:54 +0000 (11:46 -0400)]
Merge branch '20840-api-deprecate-notice' refs #20840

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

9 months ago20930: Fix deadlock in notify/listen event loop. 20930-websocket
Tom Clegg [Tue, 12 Sep 2023 13:49:35 +0000 (09:49 -0400)]
20930: Fix deadlock in notify/listen event loop.

See TestManyEventsAndSubscribers comment in previous commit.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months ago20930: Test many clients connecting and disonnecting.
Tom Clegg [Sun, 10 Sep 2023 02:01:22 +0000 (22:01 -0400)]
20930: Test many clients connecting and disonnecting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

9 months ago20930: Concurrency optimization.
Tom Clegg [Sun, 10 Sep 2023 02:02:29 +0000 (22:02 -0400)]
20930: Concurrency optimization.

In handler, create the eventSink later, and call Stop() sooner, to
avoid needlessly blocking other sinks during other setup/teardown.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20888-encrypted-cert-key-doc'. Closes #20888
Lucas Di Pentima [Fri, 8 Sep 2023 21:00:19 +0000 (18:00 -0300)]
Merge branch '20888-encrypted-cert-key-doc'. Closes #20888

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago20888: Applies suggested improvements. 20888-encrypted-cert-key-doc
Lucas Di Pentima [Fri, 8 Sep 2023 20:59:03 +0000 (17:59 -0300)]
20888: Applies suggested improvements.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago20930: Fix passing arvados.Client (with a sync.Mutex) by value.
Tom Clegg [Fri, 8 Sep 2023 20:06:57 +0000 (16:06 -0400)]
20930: Fix passing arvados.Client (with a sync.Mutex) by value.

Copying could occur while the original arvados.Client was being used
to fetch the discovery doc and had its Mutex locked.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20930: Fix unhelpful test failure output.
Tom Clegg [Fri, 8 Sep 2023 20:31:39 +0000 (16:31 -0400)]
20930: Fix unhelpful test failure output.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago19359: Support 'optional' enum type parameters
Peter Amstutz [Fri, 8 Sep 2023 20:06:37 +0000 (16:06 -0400)]
19359: Support 'optional' enum type parameters

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20888: Expands the encrypted cert key feature's documentation.
Lucas Di Pentima [Fri, 8 Sep 2023 19:59:10 +0000 (16:59 -0300)]
20888: Expands the encrypted cert key feature's documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago15768: cleanup Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Fri, 8 Sep 2023 18:48:10 +0000 (14:48 -0400)]
15768: cleanup Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: fixed multi dialog box Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Fri, 8 Sep 2023 17:07:10 +0000 (13:07 -0400)]
15768: fixed multi dialog box Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: created action set for ms actions Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 8 Sep 2023 16:58:12 +0000 (12:58 -0400)]
15768: created action set for ms actions Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: migrated checkedlist to store Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 8 Sep 2023 16:43:27 +0000 (12:43 -0400)]
15768: migrated checkedlist to store Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: moving checkedlist to store Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 8 Sep 2023 15:57:59 +0000 (11:57 -0400)]
15768: moving checkedlist to store Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: made new dialog for multi-copy Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 8 Sep 2023 14:21:49 +0000 (10:21 -0400)]
15768: made new dialog for multi-copy Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months agoAvoid Python3.7 incompatibility introduced in typing_extensions 4.8.
Tom Clegg [Fri, 8 Sep 2023 13:39:38 +0000 (09:39 -0400)]
Avoid Python3.7 incompatibility introduced in typing_extensions 4.8.

refs #20905

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago15768: collection copy dialog mostly works Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Thu, 7 Sep 2023 14:24:01 +0000 (10:24 -0400)]
15768: collection copy dialog mostly works Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months agoMerge branch '20889-installer-fixes'. Closes #20889
Lucas Di Pentima [Thu, 7 Sep 2023 13:07:18 +0000 (10:07 -0300)]
Merge branch '20889-installer-fixes'. Closes #20889

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago15768: collection copy works except dialog Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Wed, 6 Sep 2023 21:08:25 +0000 (17:08 -0400)]
15768: collection copy works except dialog Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: fixed navigateTo bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii...
Lisa Knox [Wed, 6 Sep 2023 13:32:10 +0000 (09:32 -0400)]
15768: fixed navigateTo bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months agoMerge branch '20750-sharing-token-scopes'
Brett Smith [Tue, 5 Sep 2023 20:50:09 +0000 (16:50 -0400)]
Merge branch '20750-sharing-token-scopes'

Closes #20750.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20750/20927: Add TODO about network error handling
Brett Smith [Tue, 5 Sep 2023 20:46:54 +0000 (16:46 -0400)]
20750/20927: Add TODO about network error handling

The commit message for 9717f88d29310067fa70e19fb9afb3679c036bc4 says:

> This may also provide better behavior in cases of network hiccups or
> other remote server turbulence.

This was written with the expectation that those problems would raise
`HTTPClient::BadResponseError`. That was mistaken. Those problems
actually raise lower-level socket exceptions instead.

We now have a ticket to improve the error handling here. It's out of
scope for #20750, since the error handling is no worse than it was
before the branch.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20750: Fix comment typo
Brett Smith [Tue, 5 Sep 2023 20:46:48 +0000 (16:46 -0400)]
20750: Fix comment typo

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months agoMerge branch '20612-diag-ctr-api-access'
Tom Clegg [Tue, 5 Sep 2023 19:46:17 +0000 (15:46 -0400)]
Merge branch '20612-diag-ctr-api-access'

closes #20612

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20612: Fix up punctuation/capitalization in docs.
Tom Clegg [Tue, 5 Sep 2023 19:39:33 +0000 (15:39 -0400)]
20612: Fix up punctuation/capitalization in docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20913-user-profile' refs #20913
Peter Amstutz [Tue, 5 Sep 2023 18:36:50 +0000 (14:36 -0400)]
Merge branch '20913-user-profile' refs #20913

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20840: Fix broken url 20840-api-deprecate-notice
Peter Amstutz [Tue, 5 Sep 2023 18:06:49 +0000 (14:06 -0400)]
20840: Fix broken url

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago15768: fixed delete multi process bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 5 Sep 2023 16:56:17 +0000 (12:56 -0400)]
15768: fixed delete multi process bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months ago15768: fixed single v multi move bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 5 Sep 2023 14:22:35 +0000 (10:22 -0400)]
15768: fixed single v multi move bug Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

10 months agoMerge branch '20919-fix-proxy-url'
Tom Clegg [Mon, 4 Sep 2023 14:11:32 +0000 (10:11 -0400)]
Merge branch '20919-fix-proxy-url'

fixes #20919

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20850: Don't show wb2 deprecation notice to anonymous users 20850-wb1-deprecated
Peter Amstutz [Sun, 3 Sep 2023 17:52:40 +0000 (13:52 -0400)]
20850: Don't show wb2 deprecation notice to anonymous users

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20840: Add deprecations to upgrade notes
Peter Amstutz [Sun, 3 Sep 2023 17:36:49 +0000 (13:36 -0400)]
20840: Add deprecations to upgrade notes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>