Eric Biagiotti [Tue, 18 Jun 2019 14:06:43 +0000 (10:06 -0400)]
Merge branch '15106-trgm-text-search'
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 17 Jun 2019 18:58:17 +0000 (14:58 -0400)]
15106: Adds trigram support for "like" queries
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 15:20:15 +0000 (11:20 -0400)]
Merge branch '15087-wb-queued-containers' closes #15087
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 17 Jun 2019 15:19:57 +0000 (11:19 -0400)]
15106: Fixes arvbox to update an existing arvados user to superuser
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 14:53:56 +0000 (10:53 -0400)]
"arvbox run test" is --interactive if not run with any other arguments.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Jun 2019 13:53:25 +0000 (09:53 -0400)]
Merge branch '15340-error-counters'
closes #15340
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 13:37:05 +0000 (09:37 -0400)]
15087: Add links to the oldest/longest running container
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 20:52:36 +0000 (16:52 -0400)]
15340: Skip metrics update when running tests with no registry.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 19:27:30 +0000 (15:27 -0400)]
15340: Add metrics for cloud ops/errors and instance disappearances.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 18:40:17 +0000 (14:40 -0400)]
15087: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 18:28:49 +0000 (14:28 -0400)]
Merge branch '15000-config-api'
refs #15000
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 18:21:18 +0000 (14:21 -0400)]
15000: Recommend checking config publication errors during install.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 14 Jun 2019 17:59:24 +0000 (13:59 -0400)]
15106: Updates install and upgrade docs to include trgm prerequisites
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:35:51 +0000 (13:35 -0400)]
Merge branch '15368-python-deps' closes #15368
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:10:57 +0000 (13:10 -0400)]
15368: Don't require git to install arvados-python-client
It was catching CalledProcessError but if git is not installed the
error is actually OSError.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:07:17 +0000 (13:07 -0400)]
15368: Change doc references from "arv keep put/get" to "arv-put/get"
Since the "arv" frontend just adds overhead and requires installing
both ruby and python SDK instead of just the python sdk.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:06:08 +0000 (13:06 -0400)]
15368: Add note about debian dependencies for installing from pip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 14:00:06 +0000 (10:00 -0400)]
15087: Make container status a separate panel
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 21:03:50 +0000 (17:03 -0400)]
15000: Update test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Jun 2019 20:39:27 +0000 (16:39 -0400)]
15087: Display pending/running containers and queue delay.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 19:46:01 +0000 (15:46 -0400)]
15000: Move exported config threshold to "needed by clients".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 19:45:38 +0000 (15:45 -0400)]
15000: Remove example image ID.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Jun 2019 19:14:46 +0000 (15:14 -0400)]
Merge branch '15332-fed-demo' refs #15332
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 21:25:17 +0000 (17:25 -0400)]
15332: Updated federation demo to do something a little more interesting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 13 Jun 2019 17:22:37 +0000 (13:22 -0400)]
Merge remote-tracking branch 'origin/master' into 15106-trgm-text-search
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 14:25:35 +0000 (10:25 -0400)]
Merge branch '15003-config-default-location'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Thu, 13 Jun 2019 14:22:47 +0000 (10:22 -0400)]
15106: Arvbox update to be able to run the trgm migration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 13:32:02 +0000 (09:32 -0400)]
15000: Include bad value in error message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 12 Jun 2019 20:27:07 +0000 (16:27 -0400)]
15003: Load config from default location or -config arg, not stdin.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 12 Jun 2019 20:27:23 +0000 (16:27 -0400)]
15106: Adds exception handling to the trgm migration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Wed, 12 Jun 2019 18:02:08 +0000 (14:02 -0400)]
Merge branch '15138-version-our-documentation'
refs #15138
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 11 Jun 2019 17:42:40 +0000 (13:42 -0400)]
15138: Include logic to support building multiple versions of our documentation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 19:13:19 +0000 (16:13 -0300)]
Merge branch '14930-arvput-trash-at'
Closes #14930
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 11 Jun 2019 18:08:26 +0000 (14:08 -0400)]
Test setUp sets cwltool global names set used to ensure unique names
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 18:49:16 +0000 (15:49 -0300)]
Merge branch '15350-pysdk-cookbook-recipe'
Closes #15350
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 18:32:15 +0000 (15:32 -0300)]
15350: Simplifies recipe code.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Mon, 10 Jun 2019 14:41:22 +0000 (10:41 -0400)]
15138: Show the TM notice a little bit higher.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 16:55:34 +0000 (13:55 -0300)]
15350: Adds PySDK recipe to get a container request's state.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 16:49:16 +0000 (13:49 -0300)]
15350: Fixes unnecessary api client instantiations on examples.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 23:15:23 +0000 (20:15 -0300)]
Merge branch 'master' into 14930-arvput-trash-at
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 22:44:47 +0000 (19:44 -0300)]
14930: Don't ignore DST settings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 10 Jun 2019 20:12:51 +0000 (16:12 -0400)]
Fix whitespace for gofmt 1.12.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 18:44:19 +0000 (14:44 -0400)]
15106: Adds test to verify the trgm index exists on the correct columns
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 18:10:36 +0000 (14:10 -0400)]
Merge branch '15028-fix-tests' refs #15028
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 18:09:56 +0000 (14:09 -0400)]
15028: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 17:46:52 +0000 (14:46 -0300)]
Merge branch '14946-ruby-2.5'
Refs #14946
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 17:45:54 +0000 (14:45 -0300)]
Merge branch 'master' into 14946-ruby-2.5
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 15:37:12 +0000 (11:37 -0400)]
15028: Make sure tests use a version that supports CWL v1.1
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 15:21:29 +0000 (11:21 -0400)]
15106: Fix for trgm non-string operators
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 14:09:27 +0000 (10:09 -0400)]
15106: Adds trigram search to the api
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 14:07:59 +0000 (10:07 -0400)]
Merge branch 'master' into 15106-trgm-text-search
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 19:27:05 +0000 (15:27 -0400)]
15028: Bump cwltool version for bugfix.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 18:12:38 +0000 (14:12 -0400)]
Make debian9 the default target for our package building scripts.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 21:08:23 +0000 (17:08 -0400)]
15000: Add Workbench configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 20:03:10 +0000 (16:03 -0400)]
15000: Accept byte size suffixes (KB, KiB, ...) for numeric configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 20:02:35 +0000 (16:02 -0400)]
15000: Accept negative durations in config, fix crashing error log.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 17:44:23 +0000 (13:44 -0400)]
15000: Ensure all config defaults are captured in config struct.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 14:54:26 +0000 (10:54 -0400)]
15000: Export safe parts of cluster config at /arvados/v1/config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 7 Jun 2019 16:27:22 +0000 (13:27 -0300)]
14930: Adds expiration notice in local time at the end of the run.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 7 Jun 2019 15:00:15 +0000 (12:00 -0300)]
14930: Assumes end-of-day datetime when --trash-at YYYY-MM-DD only.
Also:
* Refuses day-less dates on --trash-at
* Enhances readability on utc offset usage
* Adds tests
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 14:59:17 +0000 (10:59 -0400)]
arvbox certificates should be valid for 1 year not 30 days. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 14:41:23 +0000 (10:41 -0400)]
Merge branch '15311-api-no-colons' refs #15311
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 6 Jun 2019 15:36:34 +0000 (11:36 -0400)]
15311: Remove stringify-symbol behavior on database load
* Add test case demonstrating bug
* Remove convert_serialized_symbols_to_strings hook
* Add "rake symbols:check" to warn you if there are any serialized
columns that may have legacy symbols.
* Add "rake symbols:stringify" to warn you if there are any serialized
columns that may have legacy symbols.
* Add release notes for checking and stringifying symbols.
* Add table of contents to upgrading doc page.
* Add note about the has_symbol_keys_in_database_somehow fixture.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 01:26:27 +0000 (21:26 -0400)]
Make sdk/cli testable in interactive mode.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 01:16:30 +0000 (21:16 -0400)]
Fix the build by disabling an old crunch-job (jobs api) test that now
depends on the presence of a post 1.3 version of the
python-arvados-python-client package being present.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 17:37:49 +0000 (14:37 -0300)]
Merge branch '15306-api-nonjson-params'
Closes #15306
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 16:55:19 +0000 (13:55 -0300)]
15306: Adds warning log message when parameter isn't boolean.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 16:48:47 +0000 (13:48 -0300)]
15306: Moves include_trash param declaration to the controller.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 12:44:31 +0000 (09:44 -0300)]
15306: Adds include_trash param definition to container requests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 20:59:37 +0000 (16:59 -0400)]
Correct the release date for 1.4.0 in our documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 20:52:48 +0000 (17:52 -0300)]
15306: Fixes tests to POST form & json encoded params.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 19:59:29 +0000 (16:59 -0300)]
15306: Don't interpret include_trash="false" as include_trash=true.
The same goes to include_old_versions params at find_objects_for_index().
If any of those params aren't declared as boolean, assume false.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 17:53:28 +0000 (13:53 -0400)]
Merge branch '9945-crunch-job-python-path'
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 16:49:27 +0000 (12:49 -0400)]
Crunch-job needs to call the python executable from our sdk package for
collating job output.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 13:08:10 +0000 (10:08 -0300)]
15306: Fixes issue on groups controller.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 13:07:44 +0000 (10:07 -0300)]
15306: Adds similar test to groups, exposing the same issue as collections.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 23:34:21 +0000 (20:34 -0300)]
15306: Fixes the bug.
The problem was coming from 2 sides:
1) The collections#show action didn't have the required parameters definitions.
2) The load_required_parameters callback was being called after the object
lookup callback.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 23:32:13 +0000 (20:32 -0300)]
15306: Adds more test cases confirming the issue is encoding independent.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 19:36:19 +0000 (16:36 -0300)]
15306: Removes trailing slash on test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 19:30:01 +0000 (16:30 -0300)]
15306: Adds testing on collections#show that expose the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 18:23:47 +0000 (15:23 -0300)]
15306: Don't check for empty responses now that we use a filter.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 4 Jun 2019 18:08:34 +0000 (14:08 -0400)]
15306: Avoid paging in query string tests, too.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Jun 2019 18:02:02 +0000 (14:02 -0400)]
15306: Adjust tests: check ?include_trash= and avoid paging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 17:39:21 +0000 (14:39 -0300)]
15306: Adds integration tests with query string & form encoded params.
Specifically testing include_trash on collections.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 4 Jun 2019 17:20:24 +0000 (13:20 -0400)]
Merge branch '15028-cwl-v1.1' refs #15028
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 13:37:49 +0000 (10:37 -0300)]
14930: Adds trash_at syncing when updating a collection with '--trash-after N'
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 4 Jun 2019 13:28:04 +0000 (09:28 -0400)]
Merge branch '15003-duration-format'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 12:34:53 +0000 (09:34 -0300)]
14930: Fixes utc offset calculation when naive datetime provided & adds tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 3 Jun 2019 21:08:19 +0000 (17:08 -0400)]
15028: Update to latest cwltool.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 3 Jun 2019 20:51:19 +0000 (16:51 -0400)]
Merge branch '15286-fixes'
Fixes from the 1.4 branch.
refs #15286
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 3 Jun 2019 20:42:07 +0000 (17:42 -0300)]
14930: Removes unused variable assignments on tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Mon, 3 Jun 2019 19:14:37 +0000 (15:14 -0400)]
Do not blow up when Rails.configuration.Users.UserProfileNotificationAddress is
set to the empty string, which is the default since #13996 (it defaulted to a
dummy e-mail adress before).
refs #15286
refs #13996
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 19:42:37 +0000 (15:42 -0400)]
Update the 'upgrading' documentation to reflect the v1.4.0 release, and warn
about the db migration that can take some time during upgrade.
refs #15093
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 19:27:38 +0000 (15:27 -0400)]
Address review comments.
refs #15093
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 18:51:50 +0000 (14:51 -0400)]
Move the population of the new columns on the collections table to a standalone
script that should be run separate from the migration. Add a note to the
upgrade documentation along those lines. Make the script not blow up on
collections with invalid manifests, but rather just skip them.
refs #15093
refs #14484
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 3 Jun 2019 19:28:06 +0000 (16:28 -0300)]
14930: Assumes timezone-less provided trash datetimes as local.
Depending of the local system's clock setting, it makes the necessary
correction to express it as UTC.
Also, provides examples on the command's help output.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 3 Jun 2019 18:59:56 +0000 (14:59 -0400)]
Merge branch '14931-custom-tags'
closes #14931
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 3 Jun 2019 17:05:46 +0000 (14:05 -0300)]
14930: Moves the trash_at compute logic into its own method.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 3 Jun 2019 15:58:55 +0000 (11:58 -0400)]
14931: Change default tag prefix to "Arvados".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 31 May 2019 21:40:43 +0000 (18:40 -0300)]
14930: Adds --trash-at & --trash-after arguments to arv-put (WIP)
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
projects / arvados.git / log