Tom Clegg [Fri, 11 May 2018 20:54:16 +0000 (16:54 -0400)]
Merge branch '13473-no-cpu-constraints'
refs #13473
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 11 May 2018 19:38:51 +0000 (15:38 -0400)]
13473: Tidy up slurmConstraintArgs func.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 11 May 2018 19:25:36 +0000 (15:25 -0400)]
13473: Drop slurm resource constraints when using instancetype=X.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Fri, 11 May 2018 00:31:11 +0000 (20:31 -0400)]
Merge branch 'thehyve/fix-crunch-documentation' Fix a typo in Crunch Dispatch installation manual
No issue #, github PR 66
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:07:33 +0000 (16:07 -0400)]
Merge branch '13446-keepstore-tls'
refs #13446
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:07:16 +0000 (16:07 -0400)]
Merge branch '9918-index-error'
refs #9918
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:05:30 +0000 (16:05 -0400)]
9918: Don't mask http/network error with response body format error.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 18:12:16 +0000 (14:12 -0400)]
Bump package iteration for a-c-r in run-build-docker-jobs-image.sh
refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:41:17 +0000 (11:41 -0400)]
Bump arvados-python-client version for consistent dependencies
refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:38:13 +0000 (11:38 -0400)]
Merge branch '12256-cwl-defaults' closes #12256
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:03:29 +0000 (11:03 -0400)]
12256: Comments about workflow references / extra files.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 9 May 2018 19:56:20 +0000 (15:56 -0400)]
13446: Enable TLS if given TLSCertificateFile and TLSKeyFile.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 19:24:55 +0000 (15:24 -0400)]
12256: Only scan for referenced files first time after packing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 18:44:42 +0000 (14:44 -0400)]
12256: Pull up minimum ruamel.yaml version to get consistent output.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 18:28:14 +0000 (14:28 -0400)]
12256: Bump cwltool version for workflow packing bugfix.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 4 May 2018 20:44:29 +0000 (16:44 -0400)]
12256: Handle default references in RunInSingleContainer
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 16:34:05 +0000 (12:34 -0400)]
12256: Add a bunch of test cases.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 14:37:44 +0000 (10:37 -0400)]
12256: Fix anonymous directory default inputs with file literals
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 9 May 2018 18:19:10 +0000 (15:19 -0300)]
Merge branch '12737-api-security-deps-fixes'
Refs #12737
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 17:53:11 +0000 (13:53 -0400)]
Fix subprocess32 version constraint, refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 9 May 2018 17:47:11 +0000 (13:47 -0400)]
Avoid copying mutex after first use.
refs #13455
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 9 May 2018 17:11:55 +0000 (13:11 -0400)]
Avoid http client race in test case.
If we don't wait for Put() to return before returning from the test
case, CloseIdleConnections can cause Put() to fail, and the resulting
call to t.Error() panics the testing package.
"errType *url.Error, err Put
http://fakeaccountname.blob.127.0.0.1:42861/fakecontainername/
e4d909c290d0fb1ca068ffaddf22cbd0:
net/http: HTTP/1.x transport connection broken: http:
CloseIdleConnections called"
"panic: Fail in goroutine after TestAzureBlobVolumeCreateBlobRace has completed"
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 9 May 2018 17:03:04 +0000 (14:03 -0300)]
12737: Updated gem dependencies, adressing a couple of known vulnerabilities.
* https://nvd.nist.gov/vuln/detail/CVE-2018-3741
* https://github.com/flavorjones/loofah/issues/144
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 8 May 2018 13:30:15 +0000 (09:30 -0400)]
Merge branch '12626-merge-accounts'
refs #12626
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 8 May 2018 13:06:20 +0000 (09:06 -0400)]
Fix run script syntax.
fixes #8348
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 22:14:16 +0000 (18:14 -0400)]
12626: Merge branch 'master' into 12626-merge-accounts
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 19:37:28 +0000 (15:37 -0400)]
Tweak tests for slightly different ruamel.yaml behavior, refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 19:11:58 +0000 (15:11 -0400)]
12626: Copy omniauth info into auth account, not target account.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 19:10:24 +0000 (15:10 -0400)]
12626: Update permission graph after user merge.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 18:46:11 +0000 (14:46 -0400)]
Merge branch '13435-ruamel-yaml-ver' closes #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 14:59:58 +0000 (10:59 -0400)]
13435: Build scandir to satisfy pathlib2 dependency of a-c-r
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 14:20:57 +0000 (10:20 -0400)]
13435: Update ruamel.yaml and ciso8601 versions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 14:40:17 +0000 (10:40 -0400)]
Merge branch '13278-launch-failed'
refs #13278
refs #13399
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Mar 2018 17:01:38 +0000 (13:01 -0400)]
13278: Release jobs that are pending because "launch failed".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 13:49:30 +0000 (09:49 -0400)]
Merge branch '13365-default-secondaryFiles' refs #13365
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 13:31:57 +0000 (09:31 -0400)]
Merge branch '13383-trash-workers'
closes #13383
refs #13335
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 20:48:50 +0000 (16:48 -0400)]
13383: Implement EmptyTrashWorkers in azure and filesystem backends.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 24 Apr 2018 21:03:50 +0000 (17:03 -0400)]
13383: Fix warning about expected 404 error.
The expected error (object not found immediately after deleting it)
was being logged as a warning, and the warning erroneously stated the
error was from "HEAD recent/X" rather than "HEAD X".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 24 Apr 2018 20:32:24 +0000 (16:32 -0400)]
13383: Add PullWorkers, TrashWorkers, EmptyTrashWorkers configs.
EmptyTrashWorkers only applies to S3 volumes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 19:47:13 +0000 (15:47 -0400)]
Merge branch '12167-go-request-id'
refs #12167
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 19:44:56 +0000 (15:44 -0400)]
Merge branch 'tests-cleanup'
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 19:19:14 +0000 (15:19 -0400)]
12626: Add tests for missing new_owner_uuid.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 19:09:46 +0000 (15:09 -0400)]
12626: Advertise required params for users#merge in discovery doc.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 19:09:36 +0000 (15:09 -0400)]
12626: Improve error message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 18:59:41 +0000 (14:59 -0400)]
12626: Change variable dst_user -> new_user for consistency.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 18:56:23 +0000 (14:56 -0400)]
12626: Be more selective/explicit about changing various UUIDs.
Update comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 18:41:39 +0000 (14:41 -0400)]
12626: Update pg_terminate_backend recipe for PostgreSQL >= 9.2.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 17:26:04 +0000 (13:26 -0400)]
Avoid broken llfuse 1.3.4 ("pip install" fails).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 4 May 2018 14:50:52 +0000 (10:50 -0400)]
13365: Remove check for callback that now happens in a different place.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 4 May 2018 14:29:44 +0000 (10:29 -0400)]
13365: Add tests to confirm regressions are fixed.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 4 May 2018 14:13:05 +0000 (10:13 -0400)]
13365: clean up discover_secondary_files
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 20:18:12 +0000 (16:18 -0400)]
13365: Fix state logging
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 20:09:37 +0000 (16:09 -0400)]
Skip some unnecessary pip invocations.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 19:48:16 +0000 (15:48 -0400)]
13365: Further fixes to ensure output callback only happens once
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 25 Apr 2018 17:31:11 +0000 (13:31 -0400)]
Fix gopath/govendor recipe.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 25 Apr 2018 17:30:27 +0000 (13:30 -0400)]
Skip explicit libcloud preinstall when not using a fork.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 8 Apr 2018 00:49:21 +0000 (20:49 -0400)]
Fix wrong temp path in govendor recipe.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 8 Apr 2018 00:48:03 +0000 (20:48 -0400)]
Use released version of llfuse for tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 18:24:45 +0000 (14:24 -0400)]
12167: Test X-Request-ID headers.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 18:03:40 +0000 (14:03 -0400)]
12167: Generate only one request ID per get/put.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 17:46:57 +0000 (13:46 -0400)]
13365: Fix race condition between job submitted and event monitor threads
Don't call "done" if work reuse means a container request or job
immediately comes back as Completed because it might get called
twice.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 17:07:31 +0000 (13:07 -0400)]
Merge branch '13365-note-bug-in-docs' refs #13365
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 15:13:38 +0000 (11:13 -0400)]
13365: Add example error messages and highlight the changes.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 14:21:05 +0000 (10:21 -0400)]
12167: Generate a new request ID if caller explicitly uses "".
Skip invoking unique ID generator if ID is already set.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 14:10:11 +0000 (10:10 -0400)]
12167: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 3 May 2018 14:05:40 +0000 (10:05 -0400)]
12626: Log UUID of auth record (if any) instead of supplied token.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 2 May 2018 23:49:12 +0000 (19:49 -0400)]
13365: Bump cwltool, 3rd party package versions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 2 May 2018 20:54:45 +0000 (16:54 -0400)]
12626: Check for scoped tokens.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 2 May 2018 20:12:15 +0000 (16:12 -0400)]
12626: Add arvados/v1/users/merge API.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 1 May 2018 21:37:02 +0000 (17:37 -0400)]
13365: Bump schema-salad for better error formatting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 1 May 2018 20:30:02 +0000 (16:30 -0400)]
Bump cwltool version for secondaryFile checker support.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 1 May 2018 20:09:38 +0000 (16:09 -0400)]
13365: Reintroduce secondaryFile discovery.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 17 Apr 2018 19:23:46 +0000 (15:23 -0400)]
13365: Discover secondaryFiles associated with default files inputs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 1 May 2018 18:06:15 +0000 (14:06 -0400)]
Merge branch '13111-no-anonymous-sitefs'
refs #13111
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 1 May 2018 17:35:05 +0000 (13:35 -0400)]
Merge branch '13338-wb-run-wf-proj' refs #13338
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 1 May 2018 15:16:47 +0000 (11:16 -0400)]
12167: Pass request ID via keepclient instead of custom code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 30 Apr 2018 14:03:11 +0000 (10:03 -0400)]
Fix #ZgotmplZ in dir listing page when filename contains a colon.
refs #8784
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 30 Apr 2018 21:31:47 +0000 (17:31 -0400)]
13365: Tweak text.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 30 Apr 2018 21:29:36 +0000 (17:29 -0400)]
13365: Update release notes about a-c-r bug in v1.1.4.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 30 Apr 2018 20:37:12 +0000 (16:37 -0400)]
Fix wrong event_type when getting buffered live logs for crunch2.
refs #12690
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 27 Apr 2018 20:45:28 +0000 (16:45 -0400)]
13111: Disable siteFS routes for anonymous requests.
This enables dav clients to use HTTP authentication even when
anonymous tokens are configured.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Fri, 27 Apr 2018 15:46:02 +0000 (11:46 -0400)]
Documentation: update PostgreSQL installation instructions
refs #13165
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 27 Apr 2018 15:51:51 +0000 (11:51 -0400)]
Node manager integration test writes to stderr in chunks.
Handles EAGAIN when getting pipe buffer backpressure. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 20:51:53 +0000 (16:51 -0400)]
Avoid dangling child procs in test suite.
In go 1.10.1, these seem to make "go test" hang sometimes.
https://github.com/golang/go/issues/24050
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 20:45:01 +0000 (16:45 -0400)]
13338: Running workflow from workbench puts collections in correct project.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 20:11:37 +0000 (16:11 -0400)]
Merge branch '13377-block-sig-time' refs #13377
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 20:00:11 +0000 (16:00 -0400)]
13377: Ensure that collection fetched by PDH has longest available lifetime.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 19:34:06 +0000 (15:34 -0400)]
Merge branch '12708-balance-storage-classes'
refs #12708
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 19:30:03 +0000 (15:30 -0400)]
Merge branch '13399-log-low-priority'
refs #13399
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 18:54:24 +0000 (14:54 -0400)]
13399: Log when a slurm job's priority is unrealistically low.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 18:30:29 +0000 (14:30 -0400)]
Merge branch '13282-admin-docs' refs #13282
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 18:13:27 +0000 (14:13 -0400)]
13282: doc updates
* Improve presentation of R SDK
* Move obsolete crunch1 documentation to "Obsolete" section.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 17:14:38 +0000 (13:14 -0400)]
12708: Merge branch 'master' into 12708-balance-storage-classes
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 17:10:04 +0000 (13:10 -0400)]
12708: TODO notes about memory use and class combinations.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 10 Apr 2018 15:22:11 +0000 (11:22 -0400)]
13282: Add note about supported platforms to install guide.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 10 Apr 2018 14:24:12 +0000 (10:24 -0400)]
13282: Remove some obsolete crunchv1 documenation from python sdk.
Fix formatting of "websocket events" page.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 10 Apr 2018 14:19:45 +0000 (10:19 -0400)]
13282: Add architecture section
Also commented out obsolete documentation pages about using
crunchv1 (which have already been marked deprecated for a long time).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 28 Mar 2018 19:06:58 +0000 (15:06 -0400)]
13282: First pass at reorganizing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 26 Apr 2018 17:09:29 +0000 (13:09 -0400)]
12708: Precompute len(slots) to reduce mallocs. Rename setupCaches.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 26 Apr 2018 15:59:25 +0000 (11:59 -0400)]
Add tag to secrets test so it is recognized by new cwltest as "optional".
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log