Lucas Di Pentima [Wed, 30 May 2018 21:08:34 +0000 (18:08 -0300)]
7478: Test fixes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 May 2018 21:02:30 +0000 (18:02 -0300)]
7478: Set arvados-node-size-id tag on node creation.
This tag has the Arvados assigned node size id, not the cloud size.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 May 2018 21:00:29 +0000 (18:00 -0300)]
7478: Override CloudSizeWrapper id with config Size name.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 May 2018 20:55:59 +0000 (17:55 -0300)]
7478: Ignore redundant instance_type field on CloudSizeWrapper
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 25 May 2018 17:33:17 +0000 (14:33 -0300)]
7478: Scheduling parameters validation fixes.
* Set the preemptable parameter to child CRs by default separately from the
validations.
* Allow non-child CR to have the preemptable parameter set explicitly.
* Disallow the preemptable parameter when configuration is disabled.
* Updated tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 25 May 2018 15:42:25 +0000 (12:42 -0300)]
Merge branch 'master' into 7478-anm-spot-instances
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 25 May 2018 14:10:00 +0000 (11:10 -0300)]
7478: On EC2 driver ask for a spot instance when needed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 24 May 2018 21:31:37 +0000 (18:31 -0300)]
7478: Allow different configured node sizes to refer to the same instance type
Add 'preemptable' attribute to every node size configuration, being False
by default.
Add 'instance_type' config attribute to store the real node size name. By
default this value will be the same as the size name, so that it's compatible
with current config files.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Thu, 24 May 2018 15:30:58 +0000 (11:30 -0400)]
2411: Merge branch '2411-another-pass'
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 24 May 2018 02:26:25 +0000 (22:26 -0400)]
2411: Add a bunch of exceptions to .licenseignore for our R sdk
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 24 May 2018 02:26:05 +0000 (22:26 -0400)]
2411: Add license header to sdk/R/README.Rmd
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 24 May 2018 02:17:25 +0000 (22:17 -0400)]
2411: add copyright headers to our R files.
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 24 May 2018 02:16:58 +0000 (22:16 -0400)]
2411: Add support for R source files to build/check-copyright-notices
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 23 May 2018 21:50:16 +0000 (17:50 -0400)]
2411: another pass at adding copyright headers where missing.
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 23 May 2018 19:13:04 +0000 (16:13 -0300)]
7478: Preemptable instances support on GoSDK & dispatchcloud instance chooser
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 23 May 2018 14:04:13 +0000 (10:04 -0400)]
Add Veritas Genetics to the AUTHORS file.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Fuad Muhic [Wed, 23 May 2018 13:07:39 +0000 (15:07 +0200)]
Merge branch '13430-allow-storage-classes'
refs #13430
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 23 May 2018 10:15:31 +0000 (12:15 +0200)]
Merge branch '13453-r-sdk-incorrect-rest-call-fix'
refs #13453
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 23 May 2018 10:05:41 +0000 (12:05 +0200)]
Added test that checks that saving a committed collection updates the storage_classes_desired
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Wed, 23 May 2018 01:25:58 +0000 (21:25 -0400)]
Tweak arvados-cwl-runner subprocess32 version dependency refs #13516
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 22 May 2018 23:19:21 +0000 (19:19 -0400)]
Fix tests refs #13516
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 22 May 2018 21:08:13 +0000 (17:08 -0400)]
Merge branch '13516-fix-cwl-tests' refs #13516
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 22 May 2018 17:55:54 +0000 (13:55 -0400)]
13516: Bump cwltool, cwltest and subprocess32 versions
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 22 May 2018 17:49:44 +0000 (14:49 -0300)]
7478: Preemptable instances scheduling parameter on API server
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fuad Muhic [Tue, 22 May 2018 16:08:36 +0000 (18:08 +0200)]
Updated save method of Collection class to always update when
storage_classes is specified.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Tue, 22 May 2018 15:40:15 +0000 (17:40 +0200)]
Added tests and documentation for save and save_new methods in
Collection class.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Ward Vandewege [Tue, 22 May 2018 13:58:52 +0000 (09:58 -0400)]
9918: Merge branch '9918-index-timeout'
refs #9918
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 22 May 2018 13:47:40 +0000 (09:47 -0400)]
9918: Merge branch 'master' into 9918-index-timeout
refs #9918
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Fuad Muhic [Tue, 22 May 2018 10:25:28 +0000 (12:25 +0200)]
Added tests to arv-put to cover storage classes feature.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Mon, 21 May 2018 17:54:19 +0000 (13:54 -0400)]
Merge branch '12995-wb-merge-acct' refs #12995
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 21 May 2018 16:29:19 +0000 (12:29 -0400)]
12995: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Mon, 21 May 2018 15:18:37 +0000 (17:18 +0200)]
Added --storage-classes argument to arv-put.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Mon, 21 May 2018 15:08:17 +0000 (11:08 -0400)]
12995: Add username to link_accounts page.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 21 May 2018 14:59:47 +0000 (10:59 -0400)]
12995: Add user and admin documentation pages.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 18 May 2018 21:32:31 +0000 (18:32 -0300)]
7478: Use our libcloud fork
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 18 May 2018 20:57:21 +0000 (16:57 -0400)]
12995: Do nested logout/login to workaround SSO session.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 18 May 2018 20:28:44 +0000 (16:28 -0400)]
12995: Bugfix to support following chained user uuid redirection.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 18 May 2018 19:50:15 +0000 (15:50 -0400)]
9918: Add RequestTimeout config for keep-balance.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 18 May 2018 19:37:23 +0000 (15:37 -0400)]
12995: Don't let admins lose admin privs by linking a non-admin account.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 18 May 2018 19:10:53 +0000 (15:10 -0400)]
Merge branch '13164-container-deadlock'
refs #13164
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 18 May 2018 18:34:43 +0000 (14:34 -0400)]
12995: Add testing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 18 May 2018 18:29:34 +0000 (14:29 -0400)]
13164: Lock tables in order when locking a container.
Locking involves assigning auth_uuid, which involves looking up
container requests, so both tables must be locked in order to avoid
deadlock.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 18 May 2018 18:02:29 +0000 (14:02 -0400)]
13164: Lock tables in order for container updates.
Otherwise, a container update can lock a container row, then perform
container request queries, which can deadlock with another thread that
locked container_requests first.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 18 May 2018 13:30:48 +0000 (10:30 -0300)]
Merge branch '12737-wb-rails42-upgrade'
Closes #12737
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 17 May 2018 21:41:01 +0000 (17:41 -0400)]
12995: Can now merge with inactive accounts.
Checks that the remaining account is active so users don't lock
themselves out by accident.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 17 May 2018 20:25:21 +0000 (17:25 -0300)]
12737: Fix integration tests
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 17 May 2018 19:45:59 +0000 (15:45 -0400)]
12995: Can merge accounts in both directions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 17 May 2018 17:47:37 +0000 (14:47 -0300)]
12737: Fix controller tests
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 17 May 2018 17:00:36 +0000 (13:00 -0400)]
12995: Linking alternate login works.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 17 May 2018 16:07:06 +0000 (12:07 -0400)]
12995: Add link account page with confirmation.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 16 May 2018 20:59:29 +0000 (16:59 -0400)]
Fix another ineffassign warning in our golang code.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 16 May 2018 20:20:20 +0000 (17:20 -0300)]
12737: Assign empty default values on serialized attributes
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 16 May 2018 13:24:12 +0000 (10:24 -0300)]
12737: Send serialized attributes when save()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 15 May 2018 18:36:42 +0000 (14:36 -0400)]
Merge branch '12708-report-storage-classes'
refs #12708
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 15 May 2018 18:35:55 +0000 (14:35 -0400)]
Merge branch '13164-container-locking'
refs #13164
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 14 May 2018 19:32:26 +0000 (15:32 -0400)]
12737: Rename config serve_static_assets to serve_static_files.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 14 May 2018 19:32:23 +0000 (15:32 -0400)]
12737: Fix serialized column setup.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 14 May 2018 15:40:25 +0000 (12:40 -0300)]
12737: Remove attribute from previous tests
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 14 May 2018 14:28:36 +0000 (10:28 -0400)]
13164: Lock tables when updating multiple containers + CRs.
Avoid database inconsistencies after update races.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 14 May 2018 14:17:35 +0000 (11:17 -0300)]
12737: Upgrade workbench from rails 4.1 to 4.2 (WIP)
Serialization isn't working properly, Hash & Array columns happily receive
these types but return their text versions when accessed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 11 May 2018 20:54:16 +0000 (16:54 -0400)]
Merge branch '13473-no-cpu-constraints'
refs #13473
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 11 May 2018 19:38:51 +0000 (15:38 -0400)]
13473: Tidy up slurmConstraintArgs func.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 11 May 2018 19:25:36 +0000 (15:25 -0400)]
13473: Drop slurm resource constraints when using instancetype=X.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Fri, 11 May 2018 00:31:11 +0000 (20:31 -0400)]
Merge branch 'thehyve/fix-crunch-documentation' Fix a typo in Crunch Dispatch installation manual
No issue #, github PR 66
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:07:33 +0000 (16:07 -0400)]
Merge branch '13446-keepstore-tls'
refs #13446
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:07:16 +0000 (16:07 -0400)]
Merge branch '9918-index-error'
refs #9918
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 10 May 2018 20:05:30 +0000 (16:05 -0400)]
9918: Don't mask http/network error with response body format error.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 18:12:16 +0000 (14:12 -0400)]
Bump package iteration for a-c-r in run-build-docker-jobs-image.sh
refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:41:17 +0000 (11:41 -0400)]
Bump arvados-python-client version for consistent dependencies
refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:38:13 +0000 (11:38 -0400)]
Merge branch '12256-cwl-defaults' closes #12256
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 10 May 2018 15:03:29 +0000 (11:03 -0400)]
12256: Comments about workflow references / extra files.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Thu, 10 May 2018 09:05:29 +0000 (11:05 +0200)]
Replaced call to non-existent method execute in RESTService class with
correct call to exec method.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 9 May 2018 19:56:20 +0000 (15:56 -0400)]
13446: Enable TLS if given TLSCertificateFile and TLSKeyFile.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 19:24:55 +0000 (15:24 -0400)]
12256: Only scan for referenced files first time after packing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 18:44:42 +0000 (14:44 -0400)]
12256: Pull up minimum ruamel.yaml version to get consistent output.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 18:28:14 +0000 (14:28 -0400)]
12256: Bump cwltool version for workflow packing bugfix.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 4 May 2018 20:44:29 +0000 (16:44 -0400)]
12256: Handle default references in RunInSingleContainer
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 16:34:05 +0000 (12:34 -0400)]
12256: Add a bunch of test cases.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 3 May 2018 14:37:44 +0000 (10:37 -0400)]
12256: Fix anonymous directory default inputs with file literals
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 9 May 2018 18:19:10 +0000 (15:19 -0300)]
Merge branch '12737-api-security-deps-fixes'
Refs #12737
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 9 May 2018 17:53:11 +0000 (13:53 -0400)]
Fix subprocess32 version constraint, refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 9 May 2018 17:47:11 +0000 (13:47 -0400)]
Avoid copying mutex after first use.
refs #13455
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 9 May 2018 17:11:55 +0000 (13:11 -0400)]
Avoid http client race in test case.
If we don't wait for Put() to return before returning from the test
case, CloseIdleConnections can cause Put() to fail, and the resulting
call to t.Error() panics the testing package.
"errType *url.Error, err Put
http://fakeaccountname.blob.127.0.0.1:42861/fakecontainername/
e4d909c290d0fb1ca068ffaddf22cbd0:
net/http: HTTP/1.x transport connection broken: http:
CloseIdleConnections called"
"panic: Fail in goroutine after TestAzureBlobVolumeCreateBlobRace has completed"
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 9 May 2018 17:03:04 +0000 (14:03 -0300)]
12737: Updated gem dependencies, adressing a couple of known vulnerabilities.
* https://nvd.nist.gov/vuln/detail/CVE-2018-3741
* https://github.com/flavorjones/loofah/issues/144
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 8 May 2018 21:34:39 +0000 (17:34 -0400)]
12708: Log desired/short/surplus figures for each storage class.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 8 May 2018 13:30:15 +0000 (09:30 -0400)]
Merge branch '12626-merge-accounts'
refs #12626
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 8 May 2018 13:06:20 +0000 (09:06 -0400)]
Fix run script syntax.
fixes #8348
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 22:14:16 +0000 (18:14 -0400)]
12626: Merge branch 'master' into 12626-merge-accounts
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 19:37:28 +0000 (15:37 -0400)]
Tweak tests for slightly different ruamel.yaml behavior, refs #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 19:11:58 +0000 (15:11 -0400)]
12626: Copy omniauth info into auth account, not target account.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 19:10:24 +0000 (15:10 -0400)]
12626: Update permission graph after user merge.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 18:46:11 +0000 (14:46 -0400)]
Merge branch '13435-ruamel-yaml-ver' closes #13435
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 14:59:58 +0000 (10:59 -0400)]
13435: Build scandir to satisfy pathlib2 dependency of a-c-r
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 14:20:57 +0000 (10:20 -0400)]
13435: Update ruamel.yaml and ciso8601 versions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 14:40:17 +0000 (10:40 -0400)]
Merge branch '13278-launch-failed'
refs #13278
refs #13399
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Mar 2018 17:01:38 +0000 (13:01 -0400)]
13278: Release jobs that are pending because "launch failed".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 7 May 2018 13:49:30 +0000 (09:49 -0400)]
Merge branch '13365-default-secondaryFiles' refs #13365
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 7 May 2018 13:31:57 +0000 (09:31 -0400)]
Merge branch '13383-trash-workers'
closes #13383
refs #13335
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 4 May 2018 20:48:50 +0000 (16:48 -0400)]
13383: Implement EmptyTrashWorkers in azure and filesystem backends.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 24 Apr 2018 21:03:50 +0000 (17:03 -0400)]
13383: Fix warning about expected 404 error.
The expected error (object not found immediately after deleting it)
was being logged as a warning, and the warning erroneously stated the
error was from "HEAD recent/X" rather than "HEAD X".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log