Tom Clegg [Mon, 11 Mar 2019 04:32:22 +0000 (00:32 -0400)]
14938: Fix unreliable test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 21:05:12 +0000 (16:05 -0500)]
Merge branch '14880-keepdocker-argparse' refs #14880
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 21:03:03 +0000 (16:03 -0500)]
14880: Fix help message typo.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 20:19:59 +0000 (15:19 -0500)]
Merge branch '14291-cdc-aws' refs #14291
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 20:18:44 +0000 (15:18 -0500)]
14291: EbsVolumeType → EBSVolumeType
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 15:14:27 +0000 (10:14 -0500)]
14880: Fix argument parsing issues
arv-keepdocker passes through some flags to arv-put. The strategy it
uses is to remove known flags and pass through unknown flags. However
it doesn't know if an unknown flag takes a value or not, so it treats
the values as a positional argument rather than the value
corresponding to the unknown flag.
* Move positional arguments from "keepdocker_parser" to "arg_parser"
* Strip positional arguments (image name, tag) from arguments before
parsing known keepdocker_parser flags.
* Additionally move a couple of flags that were mistakenly added to
put.run_opts (and thus appearing in the arv-keepdocker help despite
making no sense) that should have been in put.upload_opts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 21:53:14 +0000 (16:53 -0500)]
14291: Exclude both "shutting-down" and "terminated" instances.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 21:27:18 +0000 (16:27 -0500)]
14291: Generate key fingerprints that work with AWS. Filter out terminated instances
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 19:35:01 +0000 (14:35 -0500)]
Merge branch '14920-unknown-booting-race'
fixes #14920
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 19:27:13 +0000 (14:27 -0500)]
14920: Update metrics when worker state changes idle->running.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 19:16:40 +0000 (14:16 -0500)]
14291: Add EbsVolumeType, also test fixes
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 19:16:11 +0000 (14:16 -0500)]
14291: Tweak Scratch/AddedScratch/IncludedScratch behavior
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 17:58:04 +0000 (12:58 -0500)]
Merge branch '14870-retry-logs' refs #14870
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 16:43:05 +0000 (11:43 -0500)]
14291: Report errors from ImportKeyPair
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 16:26:58 +0000 (11:26 -0500)]
14291: Try again with vendor.json
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 16:20:38 +0000 (11:20 -0500)]
14920: Improve comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 14:55:15 +0000 (09:55 -0500)]
14291: Another update to vendor.json
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fernando Monserrat [Thu, 7 Mar 2019 14:52:25 +0000 (11:52 -0300)]
refs #14891 .Merge branch '14891-upload-to-testing-repo'
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 7 Mar 2019 14:48:58 +0000 (11:48 -0300)]
issue #14891 fix spaces and initialize RC
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 01:51:59 +0000 (20:51 -0500)]
14920: Fix state==unknown during create/list race.
Recognize a new/booting node by its "instance secret" tag instead of
relying on Create() to return the new instance's ID quickly.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:35:44 +0000 (16:35 -0500)]
14291: Add more missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:30:03 +0000 (16:30 -0500)]
14291: Add more missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:25:15 +0000 (16:25 -0500)]
14291: Add missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:16:59 +0000 (16:16 -0500)]
14870: Oops need to fix edge case assertion, too
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 20:59:06 +0000 (15:59 -0500)]
14870: Adjust edge case some more, a file named '\' isn't legal either
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 20:39:44 +0000 (15:39 -0500)]
14291: Introduce "AddedScratch" and "IncludedScratch" to InstanceType
EC2 driver imports public keys on the fly.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 19:46:06 +0000 (14:46 -0500)]
14870: Remove \x01 from edge cases
It is no longer accepted by the API server, manifests with control
characters like that are invalid.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Mar 2019 19:43:29 +0000 (14:43 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'
refs #14885
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 19:38:20 +0000 (16:38 -0300)]
Merge branch '14916-rubysdk-upgrade-note'
Closes #14916
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 17:44:11 +0000 (14:44 -0300)]
14916: Rephrases upgrade notes. Enhances example script with success message.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Wed, 6 Mar 2019 15:03:49 +0000 (12:03 -0300)]
issue #14891 remove -x
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 5 Mar 2019 19:19:36 +0000 (16:19 -0300)]
issue #14891 Update to receive param rc to build for release candidates
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 19:08:10 +0000 (14:08 -0500)]
Merge branch '14807-zero-metrics'
refs #14807
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 04:00:00 +0000 (23:00 -0500)]
14807: Start reporting metrics immediately.
...instead of waiting for the first notify event.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 19:07:47 +0000 (14:07 -0500)]
14885: Reverts back to parse_datetime_as_naive
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 5 Mar 2019 19:00:58 +0000 (16:00 -0300)]
14916: Adds upgrading note with script example for collection checking.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Tue, 5 Mar 2019 16:40:57 +0000 (13:40 -0300)]
issue #14891 upload rcs . Add verbose
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 16:39:13 +0000 (11:39 -0500)]
Merge branch '14911-azure-panic'
fixes #14911
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 16:14:44 +0000 (11:14 -0500)]
Merge branch '14886-acr-recursion-runtime-error'
refs #14886
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 16:11:19 +0000 (11:11 -0500)]
14886: Fixes typo
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 14:42:16 +0000 (09:42 -0500)]
14886: Fixes mock issue between tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Tue, 5 Mar 2019 14:15:01 +0000 (09:15 -0500)]
14291: Tweak symbol naming
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Mar 2019 21:32:23 +0000 (16:32 -0500)]
14870: Fix another test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 4 Mar 2019 20:57:05 +0000 (15:57 -0500)]
14911: Fix initialization order.
Nil az.ctx was being passed to ListKeys(), causing panic.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Mon, 4 Mar 2019 20:45:41 +0000 (17:45 -0300)]
issue #14891 upload rcs to testing repo
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Peter Amstutz [Mon, 4 Mar 2019 20:08:27 +0000 (15:08 -0500)]
14870: Add tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 4 Mar 2019 19:44:39 +0000 (14:44 -0500)]
14886: Updates test to fail for the more specific case
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 22:04:57 +0000 (17:04 -0500)]
14886: Adds flag to stop infinite logs
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 21:54:30 +0000 (16:54 -0500)]
14886: Simplifies test mocking
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:38:44 +0000 (16:38 -0500)]
14870: Copy previous container logs to "container uuid" subdir
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 21:24:25 +0000 (16:24 -0500)]
14886: Adds a test that reproduces the error
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:24:13 +0000 (16:24 -0500)]
14870: Update Arvados Ruby SDK gem dependency for bugfix
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 20:48:56 +0000 (15:48 -0500)]
14870: Saving previous retry logs into collection WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:20:59 +0000 (16:20 -0500)]
Merge branch '14870-ruby-sdk-cp-r' refs #14870
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 20:51:08 +0000 (15:51 -0500)]
14870: Ruby SDK fix for copying collection into root of an empty collection
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 15:02:58 +0000 (10:02 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'
refs #14885
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 14:55:24 +0000 (09:55 -0500)]
Merge branch '14844-cdc-azure-fixes' closes #14844
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 14:30:11 +0000 (09:30 -0500)]
Merge branch '14819-arvados-jobs-on-stretch'
closes #14819
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 14:29:16 +0000 (09:29 -0500)]
14819: Merge branch 'master' into 14819-arvados-jobs-on-stretch
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 13:34:28 +0000 (08:34 -0500)]
14819: use the python executable from the python-arvados-cwl-runner package
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 20:47:59 +0000 (15:47 -0500)]
14844: Azure fixes
* If PrivateIPAddress somehow isn't defined, return empty
string (don't panic)
* If VM create fails, attempt to immediately clean the VHD and NIC
corresponding to that VM (if it doesn't work, cleanup processes
should still get around to it.)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:33:38 +0000 (15:33 -0500)]
Merge branch '9865-cwl-fix-ignored-exceptions'
refs #9865
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:32:48 +0000 (15:32 -0500)]
9865: Removes trailing whitespace
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:18:55 +0000 (15:18 -0500)]
14885: Adds python2 conditional pytz import
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:17:31 +0000 (15:17 -0500)]
14885: Removes as_naive datetime parsing distinction
parse_datetime_as_naive should only be used in instances where we want to parse a string that we know contains timezone info AND we do not want to include it in the resulting datetime object. Otherwise, parse_datetime is preferred for parsing strings with or without timezone info.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Thu, 28 Feb 2019 20:07:29 +0000 (15:07 -0500)]
Fix typo.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 7 Feb 2019 21:06:47 +0000 (16:06 -0500)]
14819: upgrade the arvados/jobs image to Debian Stretch. Also add argument to
the build script to choose which package repo to build from.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 18:05:57 +0000 (13:05 -0500)]
14291: Adjust ExtraScratch (int) to AttachScratch (bool)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 15:35:00 +0000 (10:35 -0500)]
14291: minimal stub so that tests don't panic when run without live config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 15:18:26 +0000 (10:18 -0500)]
14291: Fix tag prefix typo
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 15:16:22 +0000 (10:16 -0500)]
14291: Change instance type to a supported one, add SetTags test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Thu, 28 Feb 2019 14:43:00 +0000 (09:43 -0500)]
Ubuntu 18.04 ("bionic") packages are now confirmed working, add it to the list
of supported GNU/Linux distributions.
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 21:38:33 +0000 (16:38 -0500)]
14291: Support EBS attached storage and preemptible instances
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Morris [Wed, 27 Feb 2019 21:25:50 +0000 (16:25 -0500)]
Merge branch '14884-unicode-name-support'
Fixes #14884.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Feb 2019 20:09:10 +0000 (17:09 -0300)]
14884: Adds unicode-named file upload test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Morris [Tue, 26 Feb 2019 16:58:04 +0000 (11:58 -0500)]
14884: Fix some additional formats where Unicode can be used
Including filenames, collection names, and directory path for cache
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Mon, 25 Feb 2019 21:29:39 +0000 (16:29 -0500)]
14884: Allow non-ASCII filenames in manifests.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 19:30:16 +0000 (14:30 -0500)]
14291: Vendoring
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 19:27:20 +0000 (14:27 -0500)]
14291: Still trying to nail down aws go sdk vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Feb 2019 19:24:58 +0000 (14:24 -0500)]
Merge branch 'master' into 14885-ciso-and-conda-packaging-pr
refs #14885
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 19:23:42 +0000 (14:23 -0500)]
14291: Add individual packages in github.com/aws/aws-sdk-go to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Feb 2019 19:23:21 +0000 (14:23 -0500)]
14885: Updates sdk/cwl and services/fuse ciso8601 dependency
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 19:17:41 +0000 (14:17 -0500)]
14291: Add github.com/aws/aws-sdk-go to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 27 Feb 2019 18:57:18 +0000 (13:57 -0500)]
14291: Working on instance creation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Morris [Wed, 27 Feb 2019 15:58:28 +0000 (10:58 -0500)]
Merge branch '14383-java-sdk-double-slash'. Fixes #14383.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Ward Vandewege [Wed, 27 Feb 2019 13:45:07 +0000 (08:45 -0500)]
Change argument order for arv-keepdocker to the one that works, as it is
currently sensitive to the order.
refs #14880
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Tue, 26 Feb 2019 22:54:08 +0000 (17:54 -0500)]
14291: EC2 driver WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Feb 2019 21:47:47 +0000 (18:47 -0300)]
Merge branch '14794-link-wb1-to-wb2'
Closes #14794
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Feb 2019 20:18:19 +0000 (17:18 -0300)]
14794: Moved config validator to lib/ so that it can be testable.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Feb 2019 18:43:31 +0000 (15:43 -0300)]
14794: Validates workbench2_url config at startup.
* In case of errors, a warning message is logged & config set to false.
* Enhanced test set.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Feb 2019 15:23:22 +0000 (10:23 -0500)]
9865: Adds stack trace to API server state check exception
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Feb 2019 21:30:39 +0000 (18:30 -0300)]
14794: Adds workbench2 url to workbench's config on arvbox
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Feb 2019 19:45:54 +0000 (16:45 -0300)]
14794: Adds test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Feb 2019 17:17:19 +0000 (14:17 -0300)]
14794: Adds configuration to point to workbench2 URL explicitly
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Feb 2019 14:49:12 +0000 (11:49 -0300)]
Merge branch '14804-keepstore-transient-backend-errors'
Closes #14804
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Feb 2019 14:47:48 +0000 (11:47 -0300)]
14804: Adds test scenario comment
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
chapmanb [Sun, 24 Feb 2019 10:46:26 +0000 (05:46 -0500)]
Python 3: move to recent ciso8601 2.x branch
Older ciso8601 versions are not built for Python 3.7 which
prevents migration to latest Python on conda packaging. This
swaps over usage to match the breaking 2.x changes:
https://github.com/closeio/ciso8601/blob/master/CHANGELOG.md#v1xx---200-migration-guide
Arvados-DCO-1.1-Signed-off-by: Brad Chapman <chapmanb@fastmail.com>
Lucas Di Pentima [Fri, 22 Feb 2019 21:44:37 +0000 (18:44 -0300)]
14794: Adds Workbench2 menu item.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Fri, 22 Feb 2019 20:59:25 +0000 (15:59 -0500)]
9865: Executor exception improvement
- Fixed issue where BaseExeptions (SystemExit, KeyboardInterrupt) were being handled incorrectly
- Added a return statement to clarify that the function is meant to return after catching the exception
- Added explicit handling of a potential WorkflowException
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 22 Feb 2019 20:53:38 +0000 (15:53 -0500)]
9865: Removes handling of exceptions derived from BaseException
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
projects / arvados.git / log