arvados.git
5 years ago13593: Cleans up old experimental code.
Lucas Di Pentima [Tue, 12 Mar 2019 15:04:49 +0000 (12:04 -0300)]
13593: Cleans up old experimental code.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13593: Changes default async permission update interval. Clears cache.
Lucas Di Pentima [Tue, 12 Mar 2019 14:38:09 +0000 (11:38 -0300)]
13593: Changes default async permission update interval. Clears cache.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13593: Updates API documentation.
Lucas Di Pentima [Tue, 12 Mar 2019 12:51:11 +0000 (09:51 -0300)]
13593: Updates API documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13593: Adds 'async' parameter to groups create & update calls for perms updates.
Lucas Di Pentima [Tue, 12 Mar 2019 12:33:30 +0000 (09:33 -0300)]
13593: Adds 'async' parameter to groups create & update calls for perms updates.

When async=true, the permission graph update will be deferred by the configured
amount of seconds at 'async_permissions_update_interval' (default: 60)

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14938-unreliable-test'
Tom Clegg [Mon, 11 Mar 2019 04:34:33 +0000 (00:34 -0400)]
Merge branch '14938-unreliable-test'

fixes #14938

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14938: Fix unreliable test.
Tom Clegg [Mon, 11 Mar 2019 04:32:22 +0000 (00:32 -0400)]
14938: Fix unreliable test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '14880-keepdocker-argparse' refs #14880
Peter Amstutz [Fri, 8 Mar 2019 21:05:12 +0000 (16:05 -0500)]
Merge branch '14880-keepdocker-argparse' refs #14880

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14880: Fix help message typo.
Peter Amstutz [Fri, 8 Mar 2019 21:03:03 +0000 (16:03 -0500)]
14880: Fix help message typo.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14291-cdc-aws' refs #14291
Peter Amstutz [Fri, 8 Mar 2019 20:19:59 +0000 (15:19 -0500)]
Merge branch '14291-cdc-aws' refs #14291

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: EbsVolumeType → EBSVolumeType
Peter Amstutz [Fri, 8 Mar 2019 20:18:44 +0000 (15:18 -0500)]
14291: EbsVolumeType → EBSVolumeType

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14880: Fix argument parsing issues
Peter Amstutz [Fri, 8 Mar 2019 15:14:27 +0000 (10:14 -0500)]
14880: Fix argument parsing issues

arv-keepdocker passes through some flags to arv-put.  The strategy it
uses is to remove known flags and pass through unknown flags. However
it doesn't know if an unknown flag takes a value or not, so it treats
the values as a positional argument rather than the value
corresponding to the unknown flag.

* Move positional arguments from "keepdocker_parser" to "arg_parser"
* Strip positional arguments (image name, tag) from arguments before
  parsing known keepdocker_parser flags.
* Additionally move a couple of flags that were mistakenly added to
  put.run_opts (and thus appearing in the arv-keepdocker help despite
  making no sense) that should have been in put.upload_opts

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Exclude both "shutting-down" and "terminated" instances.
Peter Amstutz [Thu, 7 Mar 2019 21:53:14 +0000 (16:53 -0500)]
14291: Exclude both "shutting-down" and "terminated" instances.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Generate key fingerprints that work with AWS. Filter out terminated instances
Peter Amstutz [Thu, 7 Mar 2019 21:27:18 +0000 (16:27 -0500)]
14291: Generate key fingerprints that work with AWS.  Filter out terminated instances

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14920-unknown-booting-race'
Tom Clegg [Thu, 7 Mar 2019 19:35:01 +0000 (14:35 -0500)]
Merge branch '14920-unknown-booting-race'

fixes #14920

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14920: Update metrics when worker state changes idle->running.
Tom Clegg [Thu, 7 Mar 2019 19:27:13 +0000 (14:27 -0500)]
14920: Update metrics when worker state changes idle->running.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14291: Add EbsVolumeType, also test fixes
Peter Amstutz [Thu, 7 Mar 2019 19:16:40 +0000 (14:16 -0500)]
14291: Add EbsVolumeType, also test fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Tweak Scratch/AddedScratch/IncludedScratch behavior
Peter Amstutz [Thu, 7 Mar 2019 19:16:11 +0000 (14:16 -0500)]
14291: Tweak Scratch/AddedScratch/IncludedScratch behavior

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14870-retry-logs' refs #14870
Peter Amstutz [Thu, 7 Mar 2019 17:58:04 +0000 (12:58 -0500)]
Merge branch '14870-retry-logs' refs #14870

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Report errors from ImportKeyPair
Peter Amstutz [Thu, 7 Mar 2019 16:43:05 +0000 (11:43 -0500)]
14291: Report errors from ImportKeyPair

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Try again with vendor.json
Peter Amstutz [Thu, 7 Mar 2019 16:26:58 +0000 (11:26 -0500)]
14291: Try again with vendor.json

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14920: Improve comment.
Tom Clegg [Thu, 7 Mar 2019 16:20:38 +0000 (11:20 -0500)]
14920: Improve comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14291: Another update to vendor.json
Peter Amstutz [Thu, 7 Mar 2019 14:55:15 +0000 (09:55 -0500)]
14291: Another update to vendor.json

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agorefs #14891 .Merge branch '14891-upload-to-testing-repo'
Fernando Monserrat [Thu, 7 Mar 2019 14:52:25 +0000 (11:52 -0300)]
refs #14891 .Merge branch '14891-upload-to-testing-repo'
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoissue #14891 fix spaces and initialize RC
Fernando Monserrat [Thu, 7 Mar 2019 14:48:58 +0000 (11:48 -0300)]
issue #14891 fix spaces and initialize RC
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago14920: Fix state==unknown during create/list race.
Tom Clegg [Thu, 7 Mar 2019 01:51:59 +0000 (20:51 -0500)]
14920: Fix state==unknown during create/list race.

Recognize a new/booting node by its "instance secret" tag instead of
relying on Create() to return the new instance's ID quickly.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14291: Add more missing packages to vendor
Peter Amstutz [Wed, 6 Mar 2019 21:35:44 +0000 (16:35 -0500)]
14291: Add more missing packages to vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Add more missing packages to vendor
Peter Amstutz [Wed, 6 Mar 2019 21:30:03 +0000 (16:30 -0500)]
14291: Add more missing packages to vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Add missing packages to vendor
Peter Amstutz [Wed, 6 Mar 2019 21:25:15 +0000 (16:25 -0500)]
14291: Add missing packages to vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Oops need to fix edge case assertion, too
Peter Amstutz [Wed, 6 Mar 2019 21:16:59 +0000 (16:16 -0500)]
14870: Oops need to fix edge case assertion, too

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Adjust edge case some more, a file named '\' isn't legal either
Peter Amstutz [Wed, 6 Mar 2019 20:59:06 +0000 (15:59 -0500)]
14870: Adjust edge case some more, a file named '\' isn't legal either

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Introduce "AddedScratch" and "IncludedScratch" to InstanceType
Peter Amstutz [Wed, 6 Mar 2019 20:39:44 +0000 (15:39 -0500)]
14291: Introduce "AddedScratch" and "IncludedScratch" to InstanceType

EC2 driver imports public keys on the fly.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Remove \x01 from edge cases
Peter Amstutz [Wed, 6 Mar 2019 19:46:06 +0000 (14:46 -0500)]
14870: Remove \x01 from edge cases

It is no longer accepted by the API server, manifests with control
characters like that are invalid.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14885-ciso-and-conda-packaging-pr'
Eric Biagiotti [Wed, 6 Mar 2019 19:43:29 +0000 (14:43 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'

refs #14885

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '14916-rubysdk-upgrade-note'
Lucas Di Pentima [Wed, 6 Mar 2019 19:38:20 +0000 (16:38 -0300)]
Merge branch '14916-rubysdk-upgrade-note'
Closes #14916

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14916: Rephrases upgrade notes. Enhances example script with success message.
Lucas Di Pentima [Wed, 6 Mar 2019 17:44:11 +0000 (14:44 -0300)]
14916: Rephrases upgrade notes. Enhances example script with success message.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoissue #14891 remove -x
Fernando Monserrat [Wed, 6 Mar 2019 15:03:49 +0000 (12:03 -0300)]
issue #14891 remove -x
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoissue #14891 Update to receive param rc to build for release candidates
Fernando Monserrat [Tue, 5 Mar 2019 19:19:36 +0000 (16:19 -0300)]
issue #14891 Update to receive param rc to build for release candidates
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '14807-zero-metrics'
Tom Clegg [Tue, 5 Mar 2019 19:08:10 +0000 (14:08 -0500)]
Merge branch '14807-zero-metrics'

refs #14807

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14807: Start reporting metrics immediately.
Tom Clegg [Tue, 5 Mar 2019 04:00:00 +0000 (23:00 -0500)]
14807: Start reporting metrics immediately.

...instead of waiting for the first notify event.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14885: Reverts back to parse_datetime_as_naive
Eric Biagiotti [Tue, 5 Mar 2019 19:07:47 +0000 (14:07 -0500)]
14885: Reverts back to parse_datetime_as_naive

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14916: Adds upgrading note with script example for collection checking.
Lucas Di Pentima [Tue, 5 Mar 2019 19:00:58 +0000 (16:00 -0300)]
14916: Adds upgrading note with script example for collection checking.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoissue #14891 upload rcs . Add verbose
Fernando Monserrat [Tue, 5 Mar 2019 16:40:57 +0000 (13:40 -0300)]
issue #14891 upload rcs . Add verbose
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '14911-azure-panic'
Tom Clegg [Tue, 5 Mar 2019 16:39:13 +0000 (11:39 -0500)]
Merge branch '14911-azure-panic'

fixes #14911

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '14886-acr-recursion-runtime-error'
Eric Biagiotti [Tue, 5 Mar 2019 16:14:44 +0000 (11:14 -0500)]
Merge branch '14886-acr-recursion-runtime-error'

refs #14886

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14886: Fixes typo
Eric Biagiotti [Tue, 5 Mar 2019 16:11:19 +0000 (11:11 -0500)]
14886: Fixes typo

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14886: Fixes mock issue between tests
Eric Biagiotti [Tue, 5 Mar 2019 14:42:16 +0000 (09:42 -0500)]
14886: Fixes mock issue between tests

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14291: Tweak symbol naming
Peter Amstutz [Tue, 5 Mar 2019 14:15:01 +0000 (09:15 -0500)]
14291: Tweak symbol naming

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Fix another test
Peter Amstutz [Mon, 4 Mar 2019 21:32:23 +0000 (16:32 -0500)]
14870: Fix another test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14911: Fix initialization order.
Tom Clegg [Mon, 4 Mar 2019 20:57:05 +0000 (15:57 -0500)]
14911: Fix initialization order.

Nil az.ctx was being passed to ListKeys(), causing panic.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoissue #14891 upload rcs to testing repo
Fernando Monserrat [Mon, 4 Mar 2019 20:45:41 +0000 (17:45 -0300)]
issue #14891 upload rcs to testing repo
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago14870: Add tests
Peter Amstutz [Mon, 4 Mar 2019 20:08:27 +0000 (15:08 -0500)]
14870: Add tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14886: Updates test to fail for the more specific case
Eric Biagiotti [Mon, 4 Mar 2019 19:44:39 +0000 (14:44 -0500)]
14886: Updates test to fail for the more specific case

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14886: Adds flag to stop infinite logs
Eric Biagiotti [Fri, 1 Mar 2019 22:04:57 +0000 (17:04 -0500)]
14886: Adds flag to stop infinite logs

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14886: Simplifies test mocking
Eric Biagiotti [Fri, 1 Mar 2019 21:54:30 +0000 (16:54 -0500)]
14886: Simplifies test mocking

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14870: Copy previous container logs to "container uuid" subdir
Peter Amstutz [Fri, 1 Mar 2019 21:38:44 +0000 (16:38 -0500)]
14870: Copy previous container logs to "container uuid" subdir

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14886: Adds a test that reproduces the error
Eric Biagiotti [Fri, 1 Mar 2019 21:24:25 +0000 (16:24 -0500)]
14886: Adds a test that reproduces the error

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14870: Update Arvados Ruby SDK gem dependency for bugfix
Peter Amstutz [Fri, 1 Mar 2019 21:24:13 +0000 (16:24 -0500)]
14870: Update Arvados Ruby SDK gem dependency for bugfix

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Saving previous retry logs into collection WIP
Peter Amstutz [Fri, 1 Mar 2019 20:48:56 +0000 (15:48 -0500)]
14870: Saving previous retry logs into collection WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14870-ruby-sdk-cp-r' refs #14870
Peter Amstutz [Fri, 1 Mar 2019 21:20:59 +0000 (16:20 -0500)]
Merge branch '14870-ruby-sdk-cp-r' refs #14870

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14870: Ruby SDK fix for copying collection into root of an empty collection
Peter Amstutz [Fri, 1 Mar 2019 20:51:08 +0000 (15:51 -0500)]
14870: Ruby SDK fix for copying collection into root of an empty collection

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14885-ciso-and-conda-packaging-pr'
Eric Biagiotti [Fri, 1 Mar 2019 15:02:58 +0000 (10:02 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'

refs #14885

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '14844-cdc-azure-fixes' closes #14844
Peter Amstutz [Fri, 1 Mar 2019 14:55:24 +0000 (09:55 -0500)]
Merge branch '14844-cdc-azure-fixes' closes #14844

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14819-arvados-jobs-on-stretch'
Ward Vandewege [Fri, 1 Mar 2019 14:30:11 +0000 (09:30 -0500)]
Merge branch '14819-arvados-jobs-on-stretch'

closes #14819

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14819: Merge branch 'master' into 14819-arvados-jobs-on-stretch
Ward Vandewege [Fri, 1 Mar 2019 14:29:16 +0000 (09:29 -0500)]
14819: Merge branch 'master' into 14819-arvados-jobs-on-stretch

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14819: use the python executable from the python-arvados-cwl-runner package
Ward Vandewege [Fri, 1 Mar 2019 13:34:28 +0000 (08:34 -0500)]
14819: use the python executable from the python-arvados-cwl-runner package

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14844: Azure fixes
Peter Amstutz [Thu, 28 Feb 2019 20:47:59 +0000 (15:47 -0500)]
14844: Azure fixes

* If PrivateIPAddress somehow isn't defined, return empty
  string (don't panic)

* If VM create fails, attempt to immediately clean the VHD and NIC
  corresponding to that VM (if it doesn't work, cleanup processes
  should still get around to it.)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '9865-cwl-fix-ignored-exceptions'
Eric Biagiotti [Thu, 28 Feb 2019 20:33:38 +0000 (15:33 -0500)]
Merge branch '9865-cwl-fix-ignored-exceptions'

refs #9865

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago9865: Removes trailing whitespace
Eric Biagiotti [Thu, 28 Feb 2019 20:32:48 +0000 (15:32 -0500)]
9865: Removes trailing whitespace

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14885: Adds python2 conditional pytz import
Eric Biagiotti [Thu, 28 Feb 2019 20:18:55 +0000 (15:18 -0500)]
14885: Adds python2 conditional pytz import

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14885: Removes as_naive datetime parsing distinction
Eric Biagiotti [Thu, 28 Feb 2019 20:17:31 +0000 (15:17 -0500)]
14885: Removes as_naive datetime parsing distinction

parse_datetime_as_naive should only be used in instances where we want to parse a string that we know contains timezone info AND  we do not want to include it in the resulting datetime object. Otherwise, parse_datetime is preferred for parsing strings with or without timezone info.

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoFix typo.
Ward Vandewege [Thu, 28 Feb 2019 20:07:29 +0000 (15:07 -0500)]
Fix typo.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14819: upgrade the arvados/jobs image to Debian Stretch. Also add argument to
Ward Vandewege [Thu, 7 Feb 2019 21:06:47 +0000 (16:06 -0500)]
14819: upgrade the arvados/jobs image to Debian Stretch. Also add argument to
the build script to choose which package repo to build from.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14291: Adjust ExtraScratch (int) to AttachScratch (bool)
Peter Amstutz [Thu, 28 Feb 2019 18:05:57 +0000 (13:05 -0500)]
14291: Adjust ExtraScratch (int) to AttachScratch (bool)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: minimal stub so that tests don't panic when run without live config
Peter Amstutz [Thu, 28 Feb 2019 15:35:00 +0000 (10:35 -0500)]
14291: minimal stub so that tests don't panic when run without live config

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Fix tag prefix typo
Peter Amstutz [Thu, 28 Feb 2019 15:18:26 +0000 (10:18 -0500)]
14291: Fix tag prefix typo

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Change instance type to a supported one, add SetTags test
Peter Amstutz [Thu, 28 Feb 2019 15:16:22 +0000 (10:16 -0500)]
14291: Change instance type to a supported one, add SetTags test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoUbuntu 18.04 ("bionic") packages are now confirmed working, add it to the list
Ward Vandewege [Thu, 28 Feb 2019 14:43:00 +0000 (09:43 -0500)]
Ubuntu 18.04 ("bionic") packages are now confirmed working, add it to the list
of supported GNU/Linux distributions.

refs #13823

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14291: Support EBS attached storage and preemptible instances
Peter Amstutz [Wed, 27 Feb 2019 21:38:33 +0000 (16:38 -0500)]
14291: Support EBS attached storage and preemptible instances

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14884-unicode-name-support'
Tom Morris [Wed, 27 Feb 2019 21:25:50 +0000 (16:25 -0500)]
Merge branch '14884-unicode-name-support'

Fixes #14884.

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

5 years ago14884: Adds unicode-named file upload test.
Lucas Di Pentima [Wed, 27 Feb 2019 20:09:10 +0000 (17:09 -0300)]
14884: Adds unicode-named file upload test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14884: Fix some additional formats where Unicode can be used
Tom Morris [Tue, 26 Feb 2019 16:58:04 +0000 (11:58 -0500)]
14884: Fix some additional formats where Unicode can be used

Including filenames, collection names, and directory path for cache

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

5 years ago14884: Allow non-ASCII filenames in manifests.
Tom Morris [Mon, 25 Feb 2019 21:29:39 +0000 (16:29 -0500)]
14884: Allow non-ASCII filenames in manifests.

    Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

5 years ago14291: Vendoring
Peter Amstutz [Wed, 27 Feb 2019 19:30:16 +0000 (14:30 -0500)]
14291: Vendoring

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Still trying to nail down aws go sdk vendor
Peter Amstutz [Wed, 27 Feb 2019 19:27:20 +0000 (14:27 -0500)]
14291: Still trying to nail down aws go sdk vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch 'master' into 14885-ciso-and-conda-packaging-pr
Eric Biagiotti [Wed, 27 Feb 2019 19:24:58 +0000 (14:24 -0500)]
Merge branch 'master' into 14885-ciso-and-conda-packaging-pr

refs #14885

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14291: Add individual packages in github.com/aws/aws-sdk-go to vendor
Peter Amstutz [Wed, 27 Feb 2019 19:23:42 +0000 (14:23 -0500)]
14291: Add individual packages in github.com/aws/aws-sdk-go to vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14885: Updates sdk/cwl and services/fuse ciso8601 dependency
Eric Biagiotti [Wed, 27 Feb 2019 19:23:21 +0000 (14:23 -0500)]
14885: Updates sdk/cwl and services/fuse ciso8601 dependency

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14291: Add github.com/aws/aws-sdk-go to vendor
Peter Amstutz [Wed, 27 Feb 2019 19:17:41 +0000 (14:17 -0500)]
14291: Add github.com/aws/aws-sdk-go to vendor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14291: Working on instance creation
Peter Amstutz [Wed, 27 Feb 2019 18:57:18 +0000 (13:57 -0500)]
14291: Working on instance creation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14383-java-sdk-double-slash'. Fixes #14383.
Tom Morris [Wed, 27 Feb 2019 15:58:28 +0000 (10:58 -0500)]
Merge branch '14383-java-sdk-double-slash'. Fixes #14383.

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

5 years agoChange argument order for arv-keepdocker to the one that works, as it is
Ward Vandewege [Wed, 27 Feb 2019 13:45:07 +0000 (08:45 -0500)]
Change argument order for arv-keepdocker to the one that works, as it is
currently sensitive to the order.

refs #14880

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14291: EC2 driver WIP
Peter Amstutz [Tue, 26 Feb 2019 22:54:08 +0000 (17:54 -0500)]
14291: EC2 driver WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14794-link-wb1-to-wb2'
Lucas Di Pentima [Tue, 26 Feb 2019 21:47:47 +0000 (18:47 -0300)]
Merge branch '14794-link-wb1-to-wb2'
Closes #14794

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14794: Moved config validator to lib/ so that it can be testable.
Lucas Di Pentima [Tue, 26 Feb 2019 20:18:19 +0000 (17:18 -0300)]
14794: Moved config validator to lib/ so that it can be testable.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14794: Validates workbench2_url config at startup.
Lucas Di Pentima [Tue, 26 Feb 2019 18:43:31 +0000 (15:43 -0300)]
14794: Validates workbench2_url config at startup.

* In case of errors, a warning message is logged & config set to false.
* Enhanced test set.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago9865: Adds stack trace to API server state check exception
Eric Biagiotti [Tue, 26 Feb 2019 15:23:22 +0000 (10:23 -0500)]
9865: Adds stack trace to API server state check exception

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14794: Adds workbench2 url to workbench's config on arvbox
Lucas Di Pentima [Mon, 25 Feb 2019 21:30:39 +0000 (18:30 -0300)]
14794: Adds workbench2 url to workbench's config on arvbox

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14794: Adds test
Lucas Di Pentima [Mon, 25 Feb 2019 19:45:54 +0000 (16:45 -0300)]
14794: Adds test

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14794: Adds configuration to point to workbench2 URL explicitly
Lucas Di Pentima [Mon, 25 Feb 2019 17:17:19 +0000 (14:17 -0300)]
14794: Adds configuration to point to workbench2 URL explicitly

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14804-keepstore-transient-backend-errors'
Lucas Di Pentima [Mon, 25 Feb 2019 14:49:12 +0000 (11:49 -0300)]
Merge branch '14804-keepstore-transient-backend-errors'
Closes #14804

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>