arvados.git
4 months agoMerge branch '18947-keep-balance'
Tom Clegg [Fri, 6 May 2022 13:49:13 +0000 (09:49 -0400)]
Merge branch '18947-keep-balance'

refs #18947

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 months agoMerge branch '18995-code-cleanup-5'
Ward Vandewege [Fri, 6 May 2022 12:47:39 +0000 (08:47 -0400)]
Merge branch '18995-code-cleanup-5'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 months ago18995: Merge branch 'main' into 18995-code-cleanup-5
Ward Vandewege [Fri, 6 May 2022 12:47:11 +0000 (08:47 -0400)]
18995: Merge branch 'main' into 18995-code-cleanup-5

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 months agoMerge branch '19015-rvm-gemset-passenger-fix'
Ward Vandewege [Fri, 6 May 2022 12:20:49 +0000 (08:20 -0400)]
Merge branch '19015-rvm-gemset-passenger-fix'

closes #19015

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 months ago19015: Merge branch 'main' into 19015-rvm-gemset-passenger-fix
Ward Vandewege [Fri, 6 May 2022 12:19:56 +0000 (08:19 -0400)]
19015: Merge branch 'main' into 19015-rvm-gemset-passenger-fix

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 months ago18995: add a few missing alt texts to image.
Ward Vandewege [Thu, 5 May 2022 14:40:30 +0000 (10:40 -0400)]
18995: add a few missing alt texts to image.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 months ago18947: Update keep-balance package script.
Tom Clegg [Mon, 2 May 2022 19:18:51 +0000 (15:18 -0400)]
18947: Update keep-balance package script.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

4 months ago18947: Update boot recipe for keep-balance.
Tom Clegg [Mon, 2 May 2022 19:18:10 +0000 (15:18 -0400)]
18947: Update boot recipe for keep-balance.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '19077-arvbox-fixes' refs #19077
Peter Amstutz [Mon, 2 May 2022 21:32:13 +0000 (17:32 -0400)]
Merge branch '19077-arvbox-fixes' refs #19077

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago19077: yarn is already installed
Peter Amstutz [Mon, 2 May 2022 21:31:49 +0000 (17:31 -0400)]
19077: yarn is already installed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago19077: Remove Composer & default to singularity
Peter Amstutz [Mon, 2 May 2022 20:47:32 +0000 (16:47 -0400)]
19077: Remove Composer & default to singularity

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18947: Move keep-balance systemd unit file.
Tom Clegg [Mon, 2 May 2022 19:17:18 +0000 (15:17 -0400)]
18947: Move keep-balance systemd unit file.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18947: Refactor keep-balance as arvados-server subcommand.
Tom Clegg [Thu, 28 Apr 2022 19:17:05 +0000 (15:17 -0400)]
18947: Refactor keep-balance as arvados-server subcommand.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '18947-keep-web'
Tom Clegg [Mon, 2 May 2022 19:12:52 +0000 (15:12 -0400)]
Merge branch '18947-keep-web'

refs #18947

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18947: Update description field in keep-web systemd unit file.
Tom Clegg [Mon, 2 May 2022 19:12:05 +0000 (15:12 -0400)]
18947: Update description field in keep-web systemd unit file.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago19015: update the nginx override so that systemd is happy even when RVM
Ward Vandewege [Fri, 29 Apr 2022 18:55:04 +0000 (14:55 -0400)]
19015: update the nginx override so that systemd is happy even when RVM
       is not installed. We don't install the override when RVM is not
       present, so this is a "just in case".

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18947: Refactor keep-web as arvados-server command.
Tom Clegg [Fri, 29 Apr 2022 00:20:05 +0000 (20:20 -0400)]
18947: Refactor keep-web as arvados-server command.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoAdd a 2 minute lock timeout to the first invocation of apt. This is
Ward Vandewege [Thu, 28 Apr 2022 15:15:44 +0000 (11:15 -0400)]
Add a 2 minute lock timeout to the first invocation of apt. This is
supported from apt 1.9.1 (i.e Debian 11, ubuntu 20.04 and up). It avoids
race conditions, e.g. caused by cloud-init running apt on a node that
has just booted.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19075: When constructing a workflow request, set use_existing=false
Peter Amstutz [Wed, 27 Apr 2022 20:18:57 +0000 (16:18 -0400)]
19075: When constructing a workflow request, set use_existing=false

refs #19075

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoDo not pipe into `grep -q`, because that stops reading as soon as a
Ward Vandewege [Thu, 28 Apr 2022 14:43:02 +0000 (10:43 -0400)]
Do not pipe into `grep -q`, because that stops reading as soon as a
match is found, which can cause a SIGPIPE.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19015: installer fix: work around a Passenger issue with the detection of RVM
Ward Vandewege [Wed, 27 Apr 2022 21:56:26 +0000 (17:56 -0400)]
19015: installer fix: work around a Passenger issue with the detection of RVM

This fixes the on-demand building of passenger_native_support.so when
RVM is in use.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19075 When constructing a workflow request, set use_existing=false
Peter Amstutz [Wed, 27 Apr 2022 20:18:57 +0000 (16:18 -0400)]
19075 When constructing a workflow request, set use_existing=false

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18947-githttpd'
Tom Clegg [Wed, 27 Apr 2022 14:07:50 +0000 (10:07 -0400)]
Merge branch '18947-githttpd'

refs #18947

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '18696-rnaseq-training' refs #18696
Peter Amstutz [Wed, 27 Apr 2022 13:50:44 +0000 (09:50 -0400)]
Merge branch '18696-rnaseq-training' refs #18696

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18696: Integrate RNASeq-cwl-training into user guide
Peter Amstutz [Tue, 26 Apr 2022 18:41:42 +0000 (14:41 -0400)]
18696: Integrate RNASeq-cwl-training into user guide

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18835-uploadfiles-test' refs #18835
Peter Amstutz [Tue, 26 Apr 2022 13:28:43 +0000 (09:28 -0400)]
Merge branch '18835-uploadfiles-test' refs #18835

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoSalt installer multinode AWS example: modernize Arvados config a bit,
Ward Vandewege [Tue, 26 Apr 2022 12:52:53 +0000 (08:52 -0400)]
Salt installer multinode AWS example: modernize Arvados config a bit,
switch to using one S3 bucket for simplicity, make sure that the default
setting for CloudVMs/DriverParameters/IAMInstanceProfile matches
Volumes/DriverParameters/IAMRole.

refs #19054

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18835: Add a test for the is_in_collection feature of PathMapper
Peter Amstutz [Mon, 25 Apr 2022 21:00:53 +0000 (17:00 -0400)]
18835: Add a test for the is_in_collection feature of PathMapper

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '19054-local-keepstore-aws-doc-update'
Ward Vandewege [Mon, 25 Apr 2022 20:52:18 +0000 (16:52 -0400)]
Merge branch '19054-local-keepstore-aws-doc-update'

closes #19054

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19054: Merge branch 'main' into 19054-local-keepstore-aws-doc-update
Ward Vandewege [Mon, 25 Apr 2022 20:51:22 +0000 (16:51 -0400)]
19054: Merge branch 'main' into 19054-local-keepstore-aws-doc-update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19054: more doc changes.
Ward Vandewege [Mon, 25 Apr 2022 20:32:52 +0000 (16:32 -0400)]
19054: more doc changes.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago19054: doc update
Ward Vandewege [Mon, 25 Apr 2022 20:13:38 +0000 (16:13 -0400)]
19054: doc update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months agoMerge branch '17301-cwl-oom' refs #17301
Peter Amstutz [Mon, 25 Apr 2022 20:06:06 +0000 (16:06 -0400)]
Merge branch '17301-cwl-oom' refs #17301

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Add more logging handler teardown
Peter Amstutz [Mon, 25 Apr 2022 17:11:23 +0000 (13:11 -0400)]
17301: Add more logging handler teardown

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Clean up logging handler
Peter Amstutz [Mon, 25 Apr 2022 16:03:51 +0000 (12:03 -0400)]
17301: Clean up logging handler

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18947: Remove errant uses of runsu.sh.
Tom Clegg [Mon, 25 Apr 2022 14:57:28 +0000 (10:57 -0400)]
18947: Remove errant uses of runsu.sh.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18947: Update doc uses of arv-git-httpd to arvados-git-httpd.
Tom Clegg [Mon, 25 Apr 2022 14:16:10 +0000 (10:16 -0400)]
18947: Update doc uses of arv-git-httpd to arvados-git-httpd.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '18888-cwl-dir-arg' refs #18888
Peter Amstutz [Mon, 25 Apr 2022 13:52:48 +0000 (09:52 -0400)]
Merge branch '18888-cwl-dir-arg' refs #18888

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Test handles line breaks
Peter Amstutz [Mon, 25 Apr 2022 13:51:23 +0000 (09:51 -0400)]
17301: Test handles line breaks

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Shorted OOM message. Limit added detail to 40 lines.
Peter Amstutz [Thu, 21 Apr 2022 18:16:49 +0000 (14:16 -0400)]
17301: Shorted OOM message.  Limit added detail to 40 lines.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18888: Fix tests
Peter Amstutz [Thu, 21 Apr 2022 16:12:53 +0000 (12:12 -0400)]
18888: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18894-manifest-size-doc' refs #18894
Peter Amstutz [Wed, 20 Apr 2022 14:43:27 +0000 (10:43 -0400)]
Merge branch '18894-manifest-size-doc' refs #18894

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18894: Mention API.MaxRequestSize
Peter Amstutz [Wed, 20 Apr 2022 14:42:54 +0000 (10:42 -0400)]
18894: Mention API.MaxRequestSize

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Fold subsequent messages into details
Peter Amstutz [Wed, 20 Apr 2022 13:46:50 +0000 (09:46 -0400)]
17301: Fold subsequent messages into details

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Log all messages in details
Peter Amstutz [Tue, 19 Apr 2022 19:41:24 +0000 (15:41 -0400)]
17301: Log all messages in details

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago17301: Report warning about OOM killer when exit code 137
Peter Amstutz [Tue, 19 Apr 2022 19:40:56 +0000 (15:40 -0400)]
17301: Report warning about OOM killer when exit code 137

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18888: Ensure that default File/Directory references are normalized
Peter Amstutz [Tue, 19 Apr 2022 17:19:05 +0000 (13:19 -0400)]
18888: Ensure that default File/Directory references are normalized

Add test.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18994-cwl-basename' refs #18994
Peter Amstutz [Tue, 19 Apr 2022 14:13:32 +0000 (10:13 -0400)]
Merge branch '18994-cwl-basename' refs #18994

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18994: Remove commented out code
Peter Amstutz [Tue, 19 Apr 2022 14:12:36 +0000 (10:12 -0400)]
18994: Remove commented out code

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18995-code-cleanup-2'
Ward Vandewege [Fri, 15 Apr 2022 22:10:36 +0000 (18:10 -0400)]
Merge branch '18995-code-cleanup-2'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: Merge branch 'main' into 18995-code-cleanup-2
Ward Vandewege [Fri, 15 Apr 2022 22:09:44 +0000 (18:09 -0400)]
18995: Merge branch 'main' into 18995-code-cleanup-2

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18894: Add section "estimating manifest size"
Peter Amstutz [Fri, 15 Apr 2022 20:54:41 +0000 (16:54 -0400)]
18894: Add section "estimating manifest size"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18995-code-cleanup-4'
Ward Vandewege [Fri, 15 Apr 2022 20:22:24 +0000 (16:22 -0400)]
Merge branch '18995-code-cleanup-4'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: Merge branch 'main' into 18995-code-cleanup-4
Ward Vandewege [Fri, 15 Apr 2022 20:20:16 +0000 (16:20 -0400)]
18995: Merge branch 'main' into 18995-code-cleanup-4

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months agoMerge branch '18992-hpc-local-keepstore'
Tom Clegg [Fri, 15 Apr 2022 19:28:21 +0000 (15:28 -0400)]
Merge branch '18992-hpc-local-keepstore'

closes #18992

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18995: add a generic font family for font awesome.
Ward Vandewege [Fri, 15 Apr 2022 18:51:14 +0000 (14:51 -0400)]
18995: add a generic font family for font awesome.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18994: Fix needs_new_collection errors found by tests
Peter Amstutz [Fri, 15 Apr 2022 18:49:12 +0000 (14:49 -0400)]
18994: Fix needs_new_collection errors found by tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18995: <html> element should have a language attribute.
Ward Vandewege [Fri, 15 Apr 2022 18:28:46 +0000 (14:28 -0400)]
18995: <html> element should have a language attribute.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months agoMerge branch '18995-code-cleanup-3'
Ward Vandewege [Fri, 15 Apr 2022 18:23:34 +0000 (14:23 -0400)]
Merge branch '18995-code-cleanup-3'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18994: Fix for colon characters in filenames
Peter Amstutz [Fri, 15 Apr 2022 17:44:57 +0000 (13:44 -0400)]
18994: Fix for colon characters in filenames

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18947: Remove unnecessary/broken (double slash) stub.
Tom Clegg [Fri, 15 Apr 2022 17:39:00 +0000 (13:39 -0400)]
18947: Remove unnecessary/broken (double slash) stub.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18947: Avoid connecting git child to passenger/console stdin.
Tom Clegg [Fri, 15 Apr 2022 17:37:09 +0000 (13:37 -0400)]
18947: Avoid connecting git child to passenger/console stdin.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18995: add scope to all <th> tags that are missing one.
Ward Vandewege [Fri, 15 Apr 2022 17:28:09 +0000 (13:28 -0400)]
18995: add scope to all <th> tags that are missing one.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: add missing <!DOCTYPE>
Ward Vandewege [Fri, 15 Apr 2022 17:04:54 +0000 (13:04 -0400)]
18995: add missing <!DOCTYPE>

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: webshell: add missing <head> tag, add missing <title>
Ward Vandewege [Fri, 15 Apr 2022 17:02:26 +0000 (13:02 -0400)]
18995: webshell: add missing <head> tag, add missing <title>

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: <html> element should have a language attribute.
Ward Vandewege [Fri, 15 Apr 2022 16:58:58 +0000 (12:58 -0400)]
18995: <html> element should have a language attribute.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: remove unused variable (dead code).
Ward Vandewege [Fri, 15 Apr 2022 16:49:31 +0000 (12:49 -0400)]
18995: remove unused variable (dead code).

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: use forEach instead of map, not using return value.
Ward Vandewege [Fri, 15 Apr 2022 16:23:06 +0000 (12:23 -0400)]
18995: use forEach instead of map, not using return value.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18994: Fix suffix
Peter Amstutz [Fri, 15 Apr 2022 16:00:16 +0000 (12:00 -0400)]
18994: Fix suffix

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18995: CSS comments can not use double slash
Ward Vandewege [Fri, 15 Apr 2022 15:51:44 +0000 (11:51 -0400)]
18995: CSS comments can not use double slash

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18994: Remove debug prints
Peter Amstutz [Fri, 15 Apr 2022 15:51:08 +0000 (11:51 -0400)]
18994: Remove debug prints

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18994: Fixing quoting WIP
Peter Amstutz [Fri, 15 Apr 2022 15:48:59 +0000 (11:48 -0400)]
18994: Fixing quoting WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '18995-code-cleanup-1'
Ward Vandewege [Fri, 15 Apr 2022 15:45:59 +0000 (11:45 -0400)]
Merge branch '18995-code-cleanup-1'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months agoMerge branch 'main' into 18995-code-cleanup-1
Ward Vandewege [Fri, 15 Apr 2022 15:44:51 +0000 (11:44 -0400)]
Merge branch 'main' into 18995-code-cleanup-1

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: fix test oddity.
Ward Vandewege [Fri, 15 Apr 2022 15:40:23 +0000 (11:40 -0400)]
18995: fix test oddity.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18947: Fixup use of "githttpd" vs "githttp" in run_test_server.
Tom Clegg [Fri, 15 Apr 2022 15:16:12 +0000 (11:16 -0400)]
18947: Fixup use of "githttpd" vs "githttp" in run_test_server.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18995: Merge branch 'main' into 18995-code-cleanup-1
Ward Vandewege [Fri, 15 Apr 2022 15:01:48 +0000 (11:01 -0400)]
18995: Merge branch 'main' into 18995-code-cleanup-1

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: proper fix for group class destroy method. Add a test.
Ward Vandewege [Fri, 15 Apr 2022 14:55:58 +0000 (10:55 -0400)]
18995: proper fix for group class destroy method. Add a test.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18947: Handle health and metrics requests in lib/service.
Tom Clegg [Fri, 15 Apr 2022 07:29:39 +0000 (03:29 -0400)]
18947: Handle health and metrics requests in lib/service.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18947: Refactor arv-git-httpd as an arvados-server subcommand.
Tom Clegg [Fri, 15 Apr 2022 07:28:36 +0000 (03:28 -0400)]
18947: Refactor arv-git-httpd as an arvados-server subcommand.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '18995-addrislocal'
Tom Clegg [Thu, 14 Apr 2022 19:41:16 +0000 (15:41 -0400)]
Merge branch '18995-addrislocal'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agoMerge branch '18699-boot-multi-cluster'
Tom Clegg [Thu, 14 Apr 2022 19:38:54 +0000 (15:38 -0400)]
Merge branch '18699-boot-multi-cluster'

closes #18699

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18992: Fixup and test log messages about config loading.
Tom Clegg [Thu, 14 Apr 2022 19:08:56 +0000 (15:08 -0400)]
18992: Fixup and test log messages about config loading.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months agodoc: update google analytics tag, remove old shim for IE6-9.
Ward Vandewege [Thu, 14 Apr 2022 19:01:17 +0000 (15:01 -0400)]
doc: update google analytics tag, remove old shim for IE6-9.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18992: Document how to use local keepstores with HPC dispatch.
Tom Clegg [Thu, 14 Apr 2022 18:41:57 +0000 (14:41 -0400)]
18992: Document how to use local keepstores with HPC dispatch.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18994: Remove debug print
Peter Amstutz [Thu, 14 Apr 2022 18:29:24 +0000 (14:29 -0400)]
18994: Remove debug print

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months ago18994: Add test case, correctly re-stage files when basename is changed.
Peter Amstutz [Wed, 13 Apr 2022 20:16:15 +0000 (16:16 -0400)]
18994: Add test case, correctly re-stage files when basename is changed.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

5 months agoMerge branch '19011-nokogiri-bump'
Ward Vandewege [Thu, 14 Apr 2022 15:20:22 +0000 (11:20 -0400)]
Merge branch '19011-nokogiri-bump'

closes #19011

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: Un-stub addrIsLocal, make it work for in-use ports.
Tom Clegg [Thu, 14 Apr 2022 14:59:14 +0000 (10:59 -0400)]
18995: Un-stub addrIsLocal, make it work for in-use ports.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago19011: Bump nokogiri to 1.13.4
Ward Vandewege [Thu, 14 Apr 2022 14:43:22 +0000 (10:43 -0400)]
19011: Bump nokogiri to 1.13.4

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18992: Load cluster config file if present in HPC environment.
Tom Clegg [Thu, 14 Apr 2022 14:18:15 +0000 (10:18 -0400)]
18992: Load cluster config file if present in HPC environment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18995: Merge branch 'main' into 18995-code-cleanup-1
Ward Vandewege [Thu, 14 Apr 2022 13:50:03 +0000 (09:50 -0400)]
18995: Merge branch 'main' into 18995-code-cleanup-1

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18992: Fix abrupt exit on cgroup test failure.
Tom Clegg [Thu, 14 Apr 2022 06:32:09 +0000 (02:32 -0400)]
18992: Fix abrupt exit on cgroup test failure.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18992: Fix broken-node-hook global flag.
Tom Clegg [Thu, 14 Apr 2022 06:31:35 +0000 (02:31 -0400)]
18992: Fix broken-node-hook global flag.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

5 months ago18995: sdk/cwl: change function argument name to avoid confusion.
Ward Vandewege [Thu, 14 Apr 2022 00:26:46 +0000 (20:26 -0400)]
18995: sdk/cwl: change function argument name to avoid confusion.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: fuse: do not overwrite function argument in test.
Ward Vandewege [Wed, 13 Apr 2022 19:26:24 +0000 (15:26 -0400)]
18995: fuse: do not overwrite function argument in test.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: match up formatting strings and the number of arguments.
Ward Vandewege [Wed, 13 Apr 2022 19:22:24 +0000 (15:22 -0400)]
18995: match up formatting strings and the number of arguments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: remove useless if statement.
Ward Vandewege [Wed, 13 Apr 2022 19:11:41 +0000 (15:11 -0400)]
18995: remove useless if statement.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: remove useless if statement.
Ward Vandewege [Wed, 13 Apr 2022 19:09:36 +0000 (15:09 -0400)]
18995: remove useless if statement.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

5 months ago18995: remove dead code.
Ward Vandewege [Wed, 13 Apr 2022 19:05:38 +0000 (15:05 -0400)]
18995: remove dead code.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>