arvados.git
8 months ago21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Wed, 17 Apr 2024 18:24:31 +0000 (14:24 -0400)]
21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21644-flaky-test'
Tom Clegg [Wed, 17 Apr 2024 15:37:11 +0000 (11:37 -0400)]
Merge branch '21644-flaky-test'

fixes #21644

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21696: Fix unnecessary copy-by-value.
Tom Clegg [Tue, 16 Apr 2024 18:18:03 +0000 (14:18 -0400)]
21696: Fix unnecessary copy-by-value.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21696: Exercise less efficient code path by mixing up block order.
Tom Clegg [Tue, 16 Apr 2024 18:07:43 +0000 (14:07 -0400)]
21696: Exercise less efficient code path by mixing up block order.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months agoMerge branch '21692-go-packages-no-build-id'
Brett Smith [Tue, 16 Apr 2024 15:12:47 +0000 (11:12 -0400)]
Merge branch '21692-go-packages-no-build-id'

Refs #21692. Closes #21694.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months ago21037: removed jszip mock in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 16 Apr 2024 14:31:50 +0000 (10:31 -0400)]
21037: removed jszip mock in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21642: Update caniuse
Stephen Smith [Tue, 16 Apr 2024 14:29:23 +0000 (10:29 -0400)]
21642: Update caniuse

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21037: fixed sharingdialog import in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Mon, 15 Apr 2024 15:34:46 +0000 (11:34 -0400)]
21037: fixed sharingdialog import in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21696: Add "large collection" test with large files.
Tom Clegg [Mon, 15 Apr 2024 14:15:57 +0000 (10:15 -0400)]
21696: Add "large collection" test with large files.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21037: renamed a few "require" functions to adapt to webpack now reserving that word...
Lisa Knox [Mon, 15 Apr 2024 13:23:31 +0000 (09:23 -0400)]
21037: renamed a few "require" functions to adapt to webpack now reserving that word Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21692: Test RPM packages for build id conflicts 21692-go-packages-no-build-id
Brett Smith [Fri, 12 Apr 2024 18:56:45 +0000 (14:56 -0400)]
21692: Test RPM packages for build id conflicts

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months ago21692: Don't include build id links in Go packages
Brett Smith [Fri, 12 Apr 2024 18:21:20 +0000 (14:21 -0400)]
21692: Don't include build id links in Go packages

See comment for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months ago21644: Fix unreliable test. 21644-flaky-test
Tom Clegg [Fri, 12 Apr 2024 18:52:07 +0000 (14:52 -0400)]
21644: Fix unreliable test.

Test the bucket that doesn't depend on actual test speed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21037: fixed all linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Fri, 12 Apr 2024 18:11:20 +0000 (14:11 -0400)]
21037: fixed all linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 12 Apr 2024 17:59:58 +0000 (13:59 -0400)]
21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 12 Apr 2024 17:55:59 +0000 (13:55 -0400)]
21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21037: fixed most of the linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 12 Apr 2024 17:54:17 +0000 (13:54 -0400)]
21037: fixed most of the linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21037: app compiles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Fri, 12 Apr 2024 15:52:27 +0000 (11:52 -0400)]
21037: app compiles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21691-wb2-dependency-upgrades' into main. Closes #21691
Stephen Smith [Fri, 12 Apr 2024 14:50:31 +0000 (10:50 -0400)]
Merge branch '21691-wb2-dependency-upgrades' into main. Closes #21691

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months agoMerge branch '21688-io-panel-style-fixes' into main. Closes #21688
Stephen Smith [Fri, 12 Apr 2024 13:22:25 +0000 (09:22 -0400)]
Merge branch '21688-io-panel-style-fixes' into main. Closes #21688

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Update tar to 6.2.1 21691-wb2-dependency-upgrades
Stephen Smith [Fri, 12 Apr 2024 13:10:04 +0000 (09:10 -0400)]
21691: Update tar to 6.2.1

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Add minor improvements to test reliability
Stephen Smith [Fri, 12 Apr 2024 00:30:42 +0000 (20:30 -0400)]
21691: Add minor improvements to test reliability

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Add types to replace files methods for differing parameter/result types
Stephen Smith [Fri, 12 Apr 2024 00:29:04 +0000 (20:29 -0400)]
21691: Add types to replace files methods for differing parameter/result types

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Add type to login method to satisfy result type
Stephen Smith [Fri, 12 Apr 2024 00:27:50 +0000 (20:27 -0400)]
21691: Add type to login method to satisfy result type

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Avoid error by changing method of clearing token
Stephen Smith [Fri, 12 Apr 2024 00:27:01 +0000 (20:27 -0400)]
21691: Avoid error by changing method of clearing token

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21691: Update axios to 0.28.1
Stephen Smith [Fri, 12 Apr 2024 00:26:15 +0000 (20:26 -0400)]
21691: Update axios to 0.28.1

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21606: Change default output buffer size to 0.
Tom Clegg [Thu, 28 Mar 2024 14:40:12 +0000 (10:40 -0400)]
21606: Change default output buffer size to 0.

See https://dev.arvados.org/issues/21606#note-8.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21606: Improve code comments.
Tom Clegg [Thu, 28 Mar 2024 14:39:34 +0000 (10:39 -0400)]
21606: Improve code comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21606: Update config comment.
Tom Clegg [Thu, 21 Mar 2024 15:01:46 +0000 (11:01 -0400)]
21606: Update config comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago21606: Add output buffer for webdav downloads.
Tom Clegg [Tue, 19 Mar 2024 19:37:32 +0000 (15:37 -0400)]
21606: Add output buffer for webdav downloads.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months agoMerge branch '21657-diag-docker-format'
Tom Clegg [Thu, 11 Apr 2024 19:01:22 +0000 (15:01 -0400)]
Merge branch '21657-diag-docker-format'

fixes #21657

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months agoMerge branch '21659-gh-workflow-tests' into main. Closes #21659
Stephen Smith [Thu, 11 Apr 2024 17:57:26 +0000 (13:57 -0400)]
Merge branch '21659-gh-workflow-tests' into main. Closes #21659

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21688: Move json out of tableWrapper and add flexbox stretch to collection tab 21688-io-panel-style-fixes
Stephen Smith [Thu, 11 Apr 2024 17:48:50 +0000 (13:48 -0400)]
21688: Move json out of tableWrapper and add flexbox stretch to collection tab

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months agoMerge branch '21654-net-imap-downgrade'. Refs #21654
Lucas Di Pentima [Thu, 11 Apr 2024 15:17:08 +0000 (12:17 -0300)]
Merge branch '21654-net-imap-downgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Reverts net-imap to a previous version to keep ruby compatibility. 21654-net-imap-downgrade
Lucas Di Pentima [Thu, 11 Apr 2024 14:42:28 +0000 (11:42 -0300)]
21654: Reverts net-imap to a previous version to keep ruby compatibility.

Bundler upgraded this gem when upgrading rails to 7.0.8.1, making it
incompatible with ruby 2.7.2, but rails doesn't explicitly asks a new
net-imap version.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21657: Update docker archive ID introspection code for OCIv2. 21657-diag-docker-format
Tom Clegg [Thu, 11 Apr 2024 14:35:17 +0000 (10:35 -0400)]
21657: Update docker archive ID introspection code for OCIv2.

Also, when not using the built-in image, we already rely on having
docker tools available, so use `docker inspect` instead of trying to
read the tarball.

This way the introspection code now only needs to work on the built-in
image.  And now there's a test for that.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months agoReverts nokogiri upgrade to a ruby-2.7 supported version.
Lucas Di Pentima [Thu, 11 Apr 2024 13:52:43 +0000 (10:52 -0300)]
Reverts nokogiri upgrade to a ruby-2.7 supported version.

Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21313-share-dialog-warning'
Lisa Knox [Wed, 10 Apr 2024 18:52:16 +0000 (14:52 -0400)]
Merge branch '21313-share-dialog-warning'

closes #21313

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: aligned share button styles with edit button styles Arvados-DCO-1.1-Signed... 21313-share-dialog-warning
Lisa Knox [Wed, 10 Apr 2024 14:27:17 +0000 (10:27 -0400)]
21313: aligned share button styles with edit button styles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: removed vestigial saveEnabled prop Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Wed, 10 Apr 2024 14:18:53 +0000 (10:18 -0400)]
21313: removed vestigial saveEnabled prop Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21654-wb2-deps-upgrades'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 21:40:28 +0000 (18:40 -0300)]
Merge branch '21654-wb2-deps-upgrades'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21639-prefetch' refs #21639
Peter Amstutz [Tue, 9 Apr 2024 19:30:15 +0000 (15:30 -0400)]
Merge branch '21639-prefetch' refs #21639

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21313: moved items so that all rows align properly Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Tue, 9 Apr 2024 18:35:24 +0000 (14:35 -0400)]
21313: moved items so that all rows align properly Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: moved data-cy to new button Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 9 Apr 2024 17:37:29 +0000 (13:37 -0400)]
21313: moved data-cy to new button Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: removed underline from permissions select Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Tue, 9 Apr 2024 17:10:27 +0000 (13:10 -0400)]
21313: removed underline from permissions select Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21654-protobuf-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 16:08:12 +0000 (13:08 -0300)]
Merge branch '21654-protobuf-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-docker-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:31:21 +0000 (12:31 -0300)]
Merge branch '21654-docker-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades ex5-ext to address CVE-2024-27088 21654-wb2-deps-upgrades
Lucas Di Pentima [Tue, 9 Apr 2024 15:21:50 +0000 (12:21 -0300)]
21654: Upgrades ex5-ext to address CVE-2024-27088

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-express-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:18:10 +0000 (12:18 -0300)]
Merge branch '21654-express-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades ip packages to address CVE-2023-42282.
Lucas Di Pentima [Tue, 9 Apr 2024 15:17:17 +0000 (12:17 -0300)]
21654: Upgrades ip packages to address CVE-2023-42282.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-follow-redirects-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:08:03 +0000 (12:08 -0300)]
Merge branch '21654-follow-redirects-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades github.com/docker/docker to address CVE-2024-24557 21654-docker-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:57:24 +0000 (11:57 -0300)]
21654: Upgrades github.com/docker/docker to address CVE-2024-24557

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades google.golang.org/protobuf to address CVE-2024-24786 21654-protobuf-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:51:19 +0000 (11:51 -0300)]
21654: Upgrades google.golang.org/protobuf to address CVE-2024-24786

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21313: moved save button to bottom of share dialog Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Tue, 9 Apr 2024 14:47:55 +0000 (10:47 -0400)]
21313: moved save button to bottom of share dialog Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21654-rails-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 14:45:23 +0000 (11:45 -0300)]
Merge branch '21654-rails-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades follow-redirects addressing CVE-2024-28849 & CVE-2023-26159 21654-follow-redirects-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:41:40 +0000 (11:41 -0300)]
21654: Upgrades follow-redirects addressing CVE-2024-28849 & CVE-2023-26159

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades express to address CVE-2024-29041 21654-express-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:24:01 +0000 (11:24 -0300)]
21654: Upgrades express to address CVE-2024-29041

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades rails to 7.0.8.1 to address CVE-2024-26143 21654-rails-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:15:45 +0000 (11:15 -0300)]
21654: Upgrades rails to 7.0.8.1 to address CVE-2024-26143

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades rack to address several vulnerabilities.
Lucas Di Pentima [Tue, 9 Apr 2024 14:12:01 +0000 (11:12 -0300)]
21654: Upgrades rack to address several vulnerabilities.

* CVE-2024-26141
* CVE-2024-26146
* CVE-2024-25126

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-go-jose-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 14:08:58 +0000 (11:08 -0300)]
Merge branch '21654-go-jose-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades github.com/go-jose/go-jose/v3 to address CVE-2024-28180 21654-go-jose-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 13:37:20 +0000 (10:37 -0300)]
21654: Upgrades github.com/go-jose/go-jose/v3 to address CVE-2024-28180

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-browserify-sign-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 13:29:26 +0000 (10:29 -0300)]
Merge branch '21654-browserify-sign-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-nokogiri-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 13:28:38 +0000 (10:28 -0300)]
Merge branch '21654-nokogiri-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades nokogiri to address CVE-2024-25062 21654-nokogiri-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 01:12:06 +0000 (22:12 -0300)]
21654: Upgrades nokogiri to address CVE-2024-25062

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades browserify-sign to address CVE-2023-46234 21654-browserify-sign-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 00:55:25 +0000 (21:55 -0300)]
21654: Upgrades browserify-sign to address CVE-2023-46234

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoUpdates yarn.lock to unblock CI. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 00:24:06 +0000 (21:24 -0300)]
Updates yarn.lock to unblock CI. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoMerge branch '21654-deps-updates'. Closes #21654
Lucas Di Pentima [Mon, 8 Apr 2024 21:00:17 +0000 (18:00 -0300)]
Merge branch '21654-deps-updates'. Closes #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoAdd github test workflow 21659-gh-workflow-tests
Stephen Smith [Mon, 8 Apr 2024 02:18:17 +0000 (22:18 -0400)]
Add github test workflow

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21639: Add some additional prefetch tests 21639-prefetch
Peter Amstutz [Mon, 8 Apr 2024 16:14:30 +0000 (12:14 -0400)]
21639: Add some additional prefetch tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months agoDon't pass -ti when $ci is defined, no issue #
Peter Amstutz [Thu, 21 Mar 2024 19:55:58 +0000 (15:55 -0400)]
Don't pass -ti when $ci is defined, no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months agoMerge branch '21651-cmd-card-virtual-list' into main. Closes #21651
Stephen Smith [Mon, 8 Apr 2024 14:29:36 +0000 (10:29 -0400)]
Merge branch '21651-cmd-card-virtual-list' into main. Closes #21651

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21654: Upgrades @babel/traverse to address CVE-2023-45133 21654-deps-updates
Lucas Di Pentima [Mon, 8 Apr 2024 14:10:00 +0000 (11:10 -0300)]
21654: Upgrades @babel/traverse to address CVE-2023-45133

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21651: Remove unused imports and squelch warnings 21651-cmd-card-virtual-list
Stephen Smith [Sun, 7 Apr 2024 17:55:57 +0000 (13:55 -0400)]
21651: Remove unused imports and squelch warnings

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Improve formatting and remove warnings
Stephen Smith [Sun, 7 Apr 2024 17:02:10 +0000 (13:02 -0400)]
21651: Improve formatting and remove warnings

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Update browserdb
Stephen Smith [Sun, 7 Apr 2024 16:24:18 +0000 (12:24 -0400)]
21651: Update browserdb

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Update io card unit tests for virtual list
Stephen Smith [Sat, 6 Apr 2024 03:05:57 +0000 (23:05 -0400)]
21651: Update io card unit tests for virtual list

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Change io panel json tab to virtual list, fix layout issues
Stephen Smith [Fri, 5 Apr 2024 23:57:31 +0000 (19:57 -0400)]
21651: Change io panel json tab to virtual list, fix layout issues

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Create CopyResultToClipboard to format cmd for clipboard using callback
Stephen Smith [Fri, 5 Apr 2024 23:21:19 +0000 (19:21 -0400)]
21651: Create CopyResultToClipboard to format cmd for clipboard using callback

Performs formatting on large text only when clicked

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21651: Add line formatter to VirtualCodeSnippet to do cmd card line processing
Stephen Smith [Sat, 6 Apr 2024 01:46:29 +0000 (21:46 -0400)]
21651: Add line formatter to VirtualCodeSnippet to do cmd card line processing

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21639: Fix tests
Peter Amstutz [Sat, 6 Apr 2024 01:15:51 +0000 (21:15 -0400)]
21639: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21639: Wrap around read counter, have slightly less indirection
Peter Amstutz [Sat, 6 Apr 2024 00:20:03 +0000 (20:20 -0400)]
21639: Wrap around read counter, have slightly less indirection

Also add a comment about the "every 128 read ops" logic.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21639: Reenable prefetch, but not on every read()
Peter Amstutz [Fri, 5 Apr 2024 22:53:37 +0000 (18:53 -0400)]
21639: Reenable prefetch, but not on every read()

Only do prefetch every 128 invocations of read().

This should dramatically reduce the overhead of computing prefetch
while still getting some or moste of the benefits of prefetching.

Indeed, benchmarking suggests that this prefetching strategy, by
advising the kernel to map blocks into RAM, may actually improve
throughput on the high end.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21651: Add virtual code snippet, implement in cmd card
Stephen Smith [Fri, 5 Apr 2024 21:43:16 +0000 (17:43 -0400)]
21651: Add virtual code snippet, implement in cmd card

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago21654: Upgrades from babel-core 6 to @babel/core 7.
Lucas Di Pentima [Fri, 5 Apr 2024 20:43:38 +0000 (17:43 -0300)]
21654: Upgrades from babel-core 6 to @babel/core 7.

Still not enough to fix CVE-2023-45133

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months ago21654: Upgrades github.com/satori/go.uuid
Lucas Di Pentima [Fri, 5 Apr 2024 19:46:03 +0000 (16:46 -0300)]
21654: Upgrades github.com/satori/go.uuid

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

8 months agoRevert "Merge branch '21583-railsapi-base64-gem'"
Brett Smith [Fri, 5 Apr 2024 15:02:34 +0000 (11:02 -0400)]
Revert "Merge branch '21583-railsapi-base64-gem'"

This reverts commit ec67d31d1c519c4b1b624f6df0534d27f39f3ed9, reversing
changes made to e792b65d396b15b2c6c90ab2ab70d19c81f98460.

Refs #21583.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months agoMerge branch '21448-menu-reorder'
Lisa Knox [Fri, 5 Apr 2024 13:11:35 +0000 (09:11 -0400)]
Merge branch '21448-menu-reorder'

closes #21448

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21508-io-panel-performance' into main. Closes #21508
Stephen Smith [Thu, 4 Apr 2024 19:06:32 +0000 (15:06 -0400)]
Merge branch '21508-io-panel-performance' into main. Closes #21508

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

8 months ago12430: Accept flags like --skip install_services/workbench2.
Tom Clegg [Thu, 4 Apr 2024 18:25:53 +0000 (14:25 -0400)]
12430: Accept flags like --skip install_services/workbench2.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago12430: Tidy --only/--only-install code/docs.
Tom Clegg [Thu, 4 Apr 2024 18:05:10 +0000 (14:05 -0400)]
12430: Tidy --only/--only-install code/docs.

Fix harmlessly mismatched usages of $only (always an associative
array) and $only_install (always a scalar) and edit usage message to
clarify behavior when multiple --only* args are given.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months ago12430: Drop non-matching files from output if output_glob specified.
Tom Clegg [Thu, 4 Apr 2024 17:51:22 +0000 (13:51 -0400)]
12430: Drop non-matching files from output if output_glob specified.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

8 months agoMerge branch '21639-keep-cache-dict' refs #21639
Peter Amstutz [Thu, 4 Apr 2024 16:36:15 +0000 (12:36 -0400)]
Merge branch '21639-keep-cache-dict' refs #21639

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21639: Add type hint to cachelist
Peter Amstutz [Thu, 4 Apr 2024 15:57:54 +0000 (11:57 -0400)]
21639: Add type hint to cachelist

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21313: enabled background click to escape share dialog Arvados-DCO-1.1-Signed-off...
Lisa Knox [Thu, 4 Apr 2024 15:29:19 +0000 (11:29 -0400)]
21313: enabled background click to escape share dialog Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: css tweaks Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Thu, 4 Apr 2024 15:12:24 +0000 (11:12 -0400)]
21313: css tweaks Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months ago21313: added warning and diabled button while saveEnabled Arvados-DCO-1.1-Signed...
Lisa Knox [Thu, 4 Apr 2024 15:07:45 +0000 (11:07 -0400)]
21313: added warning and diabled button while saveEnabled Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

8 months agoMerge branch '21583-railsapi-base64-gem'
Brett Smith [Thu, 4 Apr 2024 14:11:47 +0000 (10:11 -0400)]
Merge branch '21583-railsapi-base64-gem'

Refs #21583.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months ago21583: Add test for base64 gem lock 21583-railsapi-base64-gem
Brett Smith [Thu, 4 Apr 2024 13:39:35 +0000 (09:39 -0400)]
21583: Add test for base64 gem lock

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

8 months ago21639: Have to actually re-add storage classes test 21639-keep-cache-dict
Peter Amstutz [Wed, 3 Apr 2024 21:32:45 +0000 (17:32 -0400)]
21639: Have to actually re-add storage classes test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

8 months ago21639: PEP8 cleanup
Peter Amstutz [Wed, 3 Apr 2024 21:28:37 +0000 (17:28 -0400)]
21639: PEP8 cleanup

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>