arvados.git
5 years agoThe libpam-arvados package on Centos7 has a dependency on the python-pam package.
Ward Vandewege [Mon, 4 Feb 2019 17:41:29 +0000 (12:41 -0500)]
The libpam-arvados package on Centos7 has a dependency on the python-pam package.

refs #9945

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '9945-make-python-package-dependency-free'
Ward Vandewege [Mon, 4 Feb 2019 15:35:51 +0000 (10:35 -0500)]
Merge branch '9945-make-python-package-dependency-free'

closes #9945

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Ward Vandewege [Mon, 4 Feb 2019 15:19:35 +0000 (10:19 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago9945: Backwards compatibility fix for libpam-arvados
Ward Vandewege [Mon, 4 Feb 2019 13:36:00 +0000 (08:36 -0500)]
9945: Backwards compatibility fix for libpam-arvados

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoarvbox certificates can have DNS in subjectAltName
Peter Amstutz [Fri, 1 Feb 2019 22:03:52 +0000 (17:03 -0500)]
arvbox certificates can have DNS in subjectAltName

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Ward Vandewege [Fri, 1 Feb 2019 15:39:16 +0000 (10:39 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago9945: More changes based on review comments.
Ward Vandewege [Wed, 30 Jan 2019 21:14:52 +0000 (16:14 -0500)]
9945: More changes based on review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '14770-wb-acr-bad-param'
Lucas Di Pentima [Wed, 30 Jan 2019 20:53:42 +0000 (17:53 -0300)]
Merge branch '14770-wb-acr-bad-param'
Closes #14770

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14738-tag-editor-fix-es5'
Lucas Di Pentima [Wed, 30 Jan 2019 20:18:30 +0000 (17:18 -0300)]
Merge branch '14738-tag-editor-fix-es5'
Closes #14738

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago9945: address more review comments.
Ward Vandewege [Tue, 29 Jan 2019 21:53:43 +0000 (16:53 -0500)]
9945: address more review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14738: Replaces double with single quotes for code style.
Lucas Di Pentima [Tue, 29 Jan 2019 22:48:15 +0000 (19:48 -0300)]
14738: Replaces double with single quotes for code style.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14738: Enhances code readability when concatenating strings.
Lucas Di Pentima [Tue, 29 Jan 2019 20:39:26 +0000 (17:39 -0300)]
14738: Enhances code readability when concatenating strings.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14738: Fixes the double-slash usage on requests to prevent 301 from controller
Lucas Di Pentima [Tue, 29 Jan 2019 19:25:02 +0000 (16:25 -0300)]
14738: Fixes the double-slash usage on requests to prevent 301 from controller

When a request is made to controller using double slashes, for example to
http://apiserver//arvados/v1/collections, arvados controller returns a 301
that breaks CORS.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14718-api-login-salted-token'
Lucas Di Pentima [Tue, 29 Jan 2019 09:30:10 +0000 (06:30 -0300)]
Merge branch '14718-api-login-salted-token'
Closes #14718

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14718: Updates controller test to support josh_id's return_to new format.
Lucas Di Pentima [Mon, 28 Jan 2019 22:03:10 +0000 (19:03 -0300)]
14718: Updates controller test to support josh_id's return_to new format.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14718: Validates remote cluster id parameter on login endpoint & callback.
Lucas Di Pentima [Mon, 28 Jan 2019 21:58:06 +0000 (18:58 -0300)]
14718: Validates remote cluster id parameter on login endpoint & callback.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago9945: address a bunch of review comments.
Ward Vandewege [Wed, 23 Jan 2019 15:12:59 +0000 (10:12 -0500)]
9945: address a bunch of review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14718: Changes the way remote param is packed into return_to.
Lucas Di Pentima [Mon, 28 Jan 2019 20:12:33 +0000 (17:12 -0300)]
14718: Changes the way remote param is packed into return_to.

Also:
* Escapes the remote param for security reasons.
* Adds comments.
* Updates tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14718: Issue salted token when passing 'remote' param to login.
Lucas Di Pentima [Sat, 26 Jan 2019 00:04:58 +0000 (21:04 -0300)]
14718: Issue salted token when passing 'remote' param to login.

When logging in with a 'remote' parameter, it's encoded into the return_to
param passed to the SSO server so that it's received back after the user
is authenticated.
When the omniauth callback receives a remote parameter inside the return_to
url, it returns the salted version of the client token.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14770: Fixes parameter on acr call.
Lucas Di Pentima [Thu, 24 Jan 2019 18:48:54 +0000 (15:48 -0300)]
14770: Fixes parameter on acr call.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14482-rubysdk-empty-dir'
Lucas Di Pentima [Tue, 22 Jan 2019 16:40:02 +0000 (13:40 -0300)]
Merge branch '14482-rubysdk-empty-dir'
Closes #14482

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago9945: use virtualenv for our python packages
Ward Vandewege [Tue, 22 Jan 2019 01:46:50 +0000 (20:46 -0500)]
9945: use virtualenv for our python packages

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago9945: run-library changes
Ward Vandewege [Thu, 20 Dec 2018 16:52:01 +0000 (11:52 -0500)]
9945: run-library changes

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago9945: there is a new rvm gpg key
Ward Vandewege [Sun, 20 Jan 2019 18:12:45 +0000 (13:12 -0500)]
9945: there is a new rvm gpg key

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14482: Stricter token regexes.
Lucas Di Pentima [Fri, 18 Jan 2019 23:24:43 +0000 (20:24 -0300)]
14482: Stricter token regexes.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14482: Manifest validation including 8-bit escaped chars; with tests.
Lucas Di Pentima [Thu, 17 Jan 2019 23:53:58 +0000 (20:53 -0300)]
14482: Manifest validation including 8-bit escaped chars; with tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14539-pysdk-empty-dir'
Lucas Di Pentima [Thu, 17 Jan 2019 16:43:25 +0000 (13:43 -0300)]
Merge branch '14539-pysdk-empty-dir'
Closes #14539

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Simplifies a bit further the regexp replacement on escape() function.
Lucas Di Pentima [Thu, 17 Jan 2019 09:55:40 +0000 (06:55 -0300)]
14539: Simplifies a bit further the regexp replacement on escape() function.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Removes pointless code comment.
Lucas Di Pentima [Thu, 17 Jan 2019 09:48:53 +0000 (06:48 -0300)]
14539: Removes pointless code comment.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Fixes and simplifies the escape() function. Updates test.
Lucas Di Pentima [Wed, 16 Jan 2019 22:34:34 +0000 (19:34 -0300)]
14539: Fixes and simplifies the escape() function. Updates test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Fixes literal backslash escaping.
Lucas Di Pentima [Wed, 16 Jan 2019 21:33:49 +0000 (18:33 -0300)]
14539: Fixes literal backslash escaping.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14482: Allow unescaped " " on stream and file token regexes (WIP)
Lucas Di Pentima [Tue, 15 Jan 2019 21:27:29 +0000 (18:27 -0300)]
14482: Allow unescaped " " on stream and file token regexes (WIP)

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14324-cdc-azure' refs #14324
Peter Amstutz [Tue, 15 Jan 2019 18:40:34 +0000 (13:40 -0500)]
Merge branch '14324-cdc-azure' refs #14324

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14482: Adds failing test about partially unescaped file tokens.
Lucas Di Pentima [Tue, 15 Jan 2019 18:33:58 +0000 (15:33 -0300)]
14482: Adds failing test about partially unescaped file tokens.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14324: Embed test public key instead of reading from file
Peter Amstutz [Tue, 15 Jan 2019 18:29:30 +0000 (13:29 -0500)]
14324: Embed test public key instead of reading from file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch 'master' into 14482-rubysdk-empty-dir
Lucas Di Pentima [Tue, 15 Jan 2019 17:34:38 +0000 (14:34 -0300)]
Merge branch 'master' into 14482-rubysdk-empty-dir

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Encode \t & \n chars on file/dir names on collection's manifest.
Lucas Di Pentima [Tue, 15 Jan 2019 17:25:39 +0000 (14:25 -0300)]
14539: Encode \t & \n chars on file/dir names on collection's manifest.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14538: Update comment.
Lucas Di Pentima [Tue, 15 Jan 2019 14:31:43 +0000 (11:31 -0300)]
14538: Update comment.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14324: Fix API throttling header fallbacks. Add gocheck_test
Peter Amstutz [Mon, 14 Jan 2019 19:13:20 +0000 (14:13 -0500)]
14324:  Fix API throttling header fallbacks.  Add gocheck_test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch 'master' into 14539-pysdk-empty-dir
Lucas Di Pentima [Mon, 14 Jan 2019 17:16:32 +0000 (14:16 -0300)]
Merge branch 'master' into 14539-pysdk-empty-dir

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoFix arvbox demo for workbench2 no issue #
Peter Amstutz [Mon, 14 Jan 2019 16:00:12 +0000 (11:00 -0500)]
Fix arvbox demo for workbench2 no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14324: Fix tests
Peter Amstutz [Fri, 11 Jan 2019 19:04:06 +0000 (14:04 -0500)]
14324: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14324: Use logrus in Azure driver. Fix Sirupsen->sirupsen in imports
Peter Amstutz [Fri, 11 Jan 2019 15:08:37 +0000 (10:08 -0500)]
14324: Use logrus in Azure driver.  Fix Sirupsen->sirupsen in imports

"It's in the past been possible to import Logrus as both upper- and
lower-case. Due to the Go package environment, this caused issues in
the community and we needed a standard. Some environments experienced
problems with the upper-case variant, so the lower-case was
decided. Everything using logrus will need to use the lower-case:
github.com/sirupsen/logrus. Any package that isn't, should be
changed."

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14324: Remove context from interface, use Stop() instead
Peter Amstutz [Thu, 10 Jan 2019 18:33:50 +0000 (13:33 -0500)]
14324: Remove context from interface, use Stop() instead

Remove 'Context' passed into methods of the InstanceSet interface,
instead the AzureInstanceSet creates its own cancellable background
context.  The Stop() method now cancels the context and waits for any
outstanding cloud driver work to complete before returning.

* Fix test
* Document how to run individual test cases against real cloud
* ManageBlobs runs periodically in the background
* Logging cleaned up

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14324: Azure driver for crunch-dispatch-cloud
Peter Amstutz [Wed, 9 Jan 2019 21:13:56 +0000 (16:13 -0500)]
14324: Azure driver for crunch-dispatch-cloud

* Adds context parameter to methods of InstanceSet interface that may block
* Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14324: Azure driver WIP
Peter Amstutz [Wed, 9 Jan 2019 16:35:55 +0000 (11:35 -0500)]
14324: Azure driver WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Fail on missing node-token tag
Peter Amstutz [Fri, 31 Aug 2018 20:41:07 +0000 (16:41 -0400)]
13964: Fail on missing node-token tag

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Forget the node token once the key fingerprint is known
Peter Amstutz [Fri, 31 Aug 2018 20:27:08 +0000 (16:27 -0400)]
13964: Forget the node token once the key fingerprint is known

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Fix string pointer capture
Peter Amstutz [Fri, 31 Aug 2018 20:15:55 +0000 (16:15 -0400)]
13964: Fix string pointer capture

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Trim space
Peter Amstutz [Fri, 31 Aug 2018 20:11:12 +0000 (16:11 -0400)]
13964: Trim space

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: ssh key checking
Peter Amstutz [Fri, 31 Aug 2018 19:55:43 +0000 (15:55 -0400)]
13964: ssh key checking

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: ssh key verification wip
Peter Amstutz [Fri, 31 Aug 2018 19:11:58 +0000 (15:11 -0400)]
13964: ssh key verification wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Set and check node-token WIP
Peter Amstutz [Fri, 31 Aug 2018 18:47:28 +0000 (14:47 -0400)]
13964: Set and check node-token WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Tweak test
Peter Amstutz [Fri, 31 Aug 2018 18:24:28 +0000 (14:24 -0400)]
13964: Tweak test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: SSH access WIP
Peter Amstutz [Fri, 31 Aug 2018 15:42:01 +0000 (11:42 -0400)]
13964: SSH access WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: InstanceTags type
Peter Amstutz [Thu, 23 Aug 2018 20:38:28 +0000 (16:38 -0400)]
13964: InstanceTags type

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: VM names are namespaced. Can set/get tags.
Peter Amstutz [Thu, 23 Aug 2018 20:22:12 +0000 (16:22 -0400)]
13964: VM names are namespaced.  Can set/get tags.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Don't panic running tests on stubs
Peter Amstutz [Thu, 23 Aug 2018 19:21:05 +0000 (15:21 -0400)]
13964: Don't panic running tests on stubs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Detect and report rate limit and quota exceeded errors
Peter Amstutz [Thu, 23 Aug 2018 19:15:42 +0000 (15:15 -0400)]
13964: Detect and report rate limit and quota exceeded errors

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Return Arvados instance type
Peter Amstutz [Thu, 23 Aug 2018 02:42:26 +0000 (22:42 -0400)]
13964: Return Arvados instance type

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Full lifecycle for NICs/VHDs/VMs
Peter Amstutz [Thu, 23 Aug 2018 02:13:23 +0000 (22:13 -0400)]
13964: Full lifecycle for NICs/VHDs/VMs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Can successfully create a VM, list existing VMs
Peter Amstutz [Tue, 21 Aug 2018 15:28:37 +0000 (11:28 -0400)]
13964: Can successfully create a VM, list existing VMs

Cleanup unused NICs.  Blob cleanup in progress.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13964: Azure provider WIP
Peter Amstutz [Mon, 20 Aug 2018 13:41:16 +0000 (09:41 -0400)]
13964: Azure provider WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoarvbox uses 'down: ready' as ready condition no issue #
Peter Amstutz [Wed, 9 Jan 2019 19:39:43 +0000 (14:39 -0500)]
arvbox uses 'down: ready' as ready condition no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoConfigure UTF-8 locale inside arvbox, no issue #
Peter Amstutz [Wed, 9 Jan 2019 15:13:56 +0000 (10:13 -0500)]
Configure UTF-8 locale inside arvbox, no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14660-arvbox-workbench2' refs #14660
Peter Amstutz [Tue, 8 Jan 2019 22:00:24 +0000 (17:00 -0500)]
Merge branch '14660-arvbox-workbench2' refs #14660

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14660: make "sv restart" work for workbench2, prevent fail loop
Peter Amstutz [Tue, 8 Jan 2019 21:57:56 +0000 (16:57 -0500)]
14660: make "sv restart" work for workbench2, prevent fail loop

Print out https url for workbench2 on start.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14482: Fix Manifest::files_count()
Lucas Di Pentima [Mon, 7 Jan 2019 15:39:12 +0000 (12:39 -0300)]
14482: Fix Manifest::files_count()

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14482: Handle escaped chars on manifest validation.
Lucas Di Pentima [Mon, 7 Jan 2019 14:12:01 +0000 (11:12 -0300)]
14482: Handle escaped chars on manifest validation.

* Escaped & unescaped chars are treated equally, except for \040.
* Empty '.' (and \056) named file tokens are accepted.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14691-suggested-ssh-config-update'
Ward Vandewege [Fri, 4 Jan 2019 22:28:56 +0000 (17:28 -0500)]
Merge branch '14691-suggested-ssh-config-update'

closes #14691

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14482: Don't list empty dir placeholder files on collections listings.
Lucas Di Pentima [Fri, 4 Jan 2019 21:37:15 +0000 (18:37 -0300)]
14482: Don't list empty dir placeholder files on collections listings.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14482: Enhance code readability
Lucas Di Pentima [Fri, 4 Jan 2019 21:34:58 +0000 (18:34 -0300)]
14482: Enhance code readability

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14691: workbench update, bring in line with documentation
Ward Vandewege [Fri, 4 Jan 2019 21:02:54 +0000 (16:02 -0500)]
14691: workbench update, bring in line with documentation

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14691: documentation update
Ward Vandewege [Fri, 4 Jan 2019 15:29:43 +0000 (10:29 -0500)]
14691: documentation update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14660: Enable workbench2 to connect to development server via websockets.
Peter Amstutz [Fri, 4 Jan 2019 19:30:39 +0000 (14:30 -0500)]
14660: Enable workbench2 to connect to development server via websockets.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14660: Proxy keep-web for https. Install root cert inside the container.
Peter Amstutz [Fri, 4 Jan 2019 16:28:12 +0000 (11:28 -0500)]
14660: Proxy keep-web for https.  Install root cert inside the container.

Now services inside the container can talk to each other without the
"insecure" flag.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14660: Add workbench2 to arvbox. Improve SSL support in arvbox.
Peter Amstutz [Thu, 3 Jan 2019 19:53:25 +0000 (14:53 -0500)]
14660: Add workbench2 to arvbox.  Improve SSL support in arvbox.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14539: Escape backslash & space chars on file/dir names, with tests.
Lucas Di Pentima [Thu, 20 Dec 2018 19:32:39 +0000 (16:32 -0300)]
14539: Escape backslash & space chars on file/dir names, with tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Fixes fuse tests.
Lucas Di Pentima [Tue, 18 Dec 2018 00:54:07 +0000 (21:54 -0300)]
14539: Fixes fuse tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Tests that '\056' cannot be used as a file or directory name.
Lucas Di Pentima [Mon, 17 Dec 2018 23:35:31 +0000 (20:35 -0300)]
14539: Tests that '\056' cannot be used as a file or directory name.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14539: Persists empty directories by adding a '\056' empty file.
Lucas Di Pentima [Mon, 17 Dec 2018 21:18:52 +0000 (18:18 -0300)]
14539: Persists empty directories by adding a '\056' empty file.

Also:
* Fixes test
* Errors out when trying to open a file/dir with '\056' on its path.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14360-dispatch-cloud'
Tom Clegg [Thu, 20 Dec 2018 19:02:05 +0000 (14:02 -0500)]
Merge branch '14360-dispatch-cloud'

closes #14360

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Merge branch 'master' into 14360-dispatch-cloud
Tom Clegg [Thu, 20 Dec 2018 18:58:26 +0000 (13:58 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Fix error log level on first probe after boot.
Tom Clegg [Thu, 20 Dec 2018 18:57:27 +0000 (13:57 -0500)]
14360: Fix error log level on first probe after boot.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago9945: first set of changes.
Ward Vandewege [Thu, 20 Dec 2018 16:51:39 +0000 (11:51 -0500)]
9945: first set of changes.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago14360: Test for errant Create calls after failure.
Tom Clegg [Thu, 20 Dec 2018 16:00:10 +0000 (11:00 -0500)]
14360: Test for errant Create calls after failure.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Fix test case.
Tom Clegg [Thu, 20 Dec 2018 15:03:19 +0000 (10:03 -0500)]
14360: Fix test case.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Fix instance creation limiting.
Tom Clegg [Thu, 20 Dec 2018 14:44:45 +0000 (09:44 -0500)]
14360: Fix instance creation limiting.

Scheduler was claiming one of its unalloc instances only if the
container could be scheduled, so the "need new instance" condition was
not triggered for lower-priority containers needing the same instance
type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Fix panic in test when last container is run twice.
Tom Clegg [Thu, 20 Dec 2018 14:42:49 +0000 (09:42 -0500)]
14360: Fix panic in test when last container is run twice.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Debug log when acquiring lock.
Tom Clegg [Thu, 20 Dec 2018 14:27:37 +0000 (09:27 -0500)]
14360: Debug log when acquiring lock.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Shutdown pool between tests to eliminate leaking logs.
Tom Clegg [Thu, 20 Dec 2018 14:25:56 +0000 (09:25 -0500)]
14360: Shutdown pool between tests to eliminate leaking logs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14360: Replace OnComplete/OnCancel with ExecuteContainer callback.
Tom Clegg [Tue, 18 Dec 2018 20:08:57 +0000 (15:08 -0500)]
14360: Replace OnComplete/OnCancel with ExecuteContainer callback.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '14327-cwl-unnecessary-collections' refs #14327
Peter Amstutz [Tue, 18 Dec 2018 19:14:58 +0000 (14:14 -0500)]
Merge branch '14327-cwl-unnecessary-collections' refs #14327

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14360: Call ChooseType just once per container.
Tom Clegg [Tue, 18 Dec 2018 19:11:23 +0000 (14:11 -0500)]
14360: Call ChooseType just once per container.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14327: Add comments
Peter Amstutz [Tue, 18 Dec 2018 19:08:58 +0000 (14:08 -0500)]
14327: Add comments

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14360: Remove log spam.
Tom Clegg [Tue, 18 Dec 2018 18:54:40 +0000 (13:54 -0500)]
14360: Remove log spam.

Just don't reserve space for an image if there is no image.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '14640-api-wb-activejob-upgrade'
Lucas Di Pentima [Tue, 18 Dec 2018 17:02:05 +0000 (14:02 -0300)]
Merge branch '14640-api-wb-activejob-upgrade'
Closes #14640

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoFix test_with_arvbox.sh to use https://versions.arvados.org no issue #
Peter Amstutz [Tue, 18 Dec 2018 16:50:51 +0000 (11:50 -0500)]
Fix test_with_arvbox.sh to use https://versions.arvados.org no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14640: Upgrades WB rails to 4.2.11
Lucas Di Pentima [Tue, 18 Dec 2018 16:17:24 +0000 (13:17 -0300)]
14640: Upgrades WB rails to 4.2.11

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14640: Upgrades API to rails 4.2.11
Lucas Di Pentima [Tue, 18 Dec 2018 16:02:41 +0000 (13:02 -0300)]
14640: Upgrades API to rails 4.2.11

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>