Tom Clegg [Tue, 18 Dec 2018 19:11:23 +0000 (14:11 -0500)]
14360: Call ChooseType just once per container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 18:54:40 +0000 (13:54 -0500)]
14360: Remove log spam.
Just don't reserve space for an image if there is no image.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 15:02:55 +0000 (10:02 -0500)]
Merge branch 'master' into 14360-dispatch-cloud
refs #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:59:05 +0000 (02:59 -0500)]
14360: Shutdown between tests to eliminate leaking logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:27:27 +0000 (02:27 -0500)]
14360: Clean up stub driver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 04:37:47 +0000 (23:37 -0500)]
14360: Avoid overreporting instances during Create/List race.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Mon, 17 Dec 2018 20:53:43 +0000 (15:53 -0500)]
We've moved the chat/community support channel from IRC to gitter.im.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 20:14:11 +0000 (15:14 -0500)]
14360: Comment stubServer.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 17:46:54 +0000 (12:46 -0500)]
Update cwltool refs #14510
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:49:43 +0000 (13:49 -0500)]
14360: Locking comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:47:14 +0000 (13:47 -0500)]
14360: Fix log spam on normal race condition.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 16:31:52 +0000 (11:31 -0500)]
Update README and community doc page. refs #14617
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 15:57:40 +0000 (10:57 -0500)]
14360: Comment TestDispatchToStubDriver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 20:59:34 +0000 (15:59 -0500)]
11419: Read JSON files in binary mode.
Files opened in text mode do not have a size() method.
refs #11419
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 14 Dec 2018 21:36:50 +0000 (16:36 -0500)]
Set DBName correctly for arvbox demo, hopefully fix ci.commonwl.org
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 17:54:00 +0000 (12:54 -0500)]
Merge branch '14596-check-container-locked'
closes #14596
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Fri, 14 Dec 2018 16:17:23 +0000 (13:17 -0300)]
no issue # Fix and update rvm GPG Key signature issue on test dockerfiles
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:03:29 +0000 (13:03 -0300)]
Merge branch '13006-sync-groups-is_a-filter'
Closes #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:02:46 +0000 (13:02 -0300)]
Merge branch '13006-api-is_a-filter'
Refs #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 15:54:49 +0000 (12:54 -0300)]
Merge branch '13006-api-is_a-filter' into 13006-sync-groups-is_a-filter
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 21:03:24 +0000 (18:03 -0300)]
13006: Uses 'is_a' filter again because it's being fixed on the API server.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Thu, 13 Dec 2018 21:02:53 +0000 (18:02 -0300)]
no issue # Fix and update rvm GPG Key signature issue
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 20:53:33 +0000 (17:53 -0300)]
13006: Fail when using is_a filter on uuid attr and prefix_uuid doesn't match.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 20:16:42 +0000 (15:16 -0500)]
14596: crunch-run: don't do anything unless container is Locked.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 20:09:12 +0000 (15:09 -0500)]
Merge branch '14595-leave-modified-at' refs #14595
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 20:08:53 +0000 (15:08 -0500)]
14595: Fix comment.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 19:37:29 +0000 (14:37 -0500)]
14595: Add leave_modified_at_alone
leave_modified_by_user_alone does not affect modified_at
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 19:34:21 +0000 (16:34 -0300)]
Merge branch '14012-arvput-check-cache'
Closes #14012
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 19:21:38 +0000 (16:21 -0300)]
13006: Adds expression index on links.[tail|head]_uuid
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 18:16:29 +0000 (13:16 -0500)]
Merge branch '14596-no-requeue'
fixes #14596
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 17:28:28 +0000 (14:28 -0300)]
13006: Changes is_a filter to use a substring query to support remote UUIDs.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 17:10:52 +0000 (12:10 -0500)]
14596: Use sbatch --no-requeue to avoid bogus container re-runs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 16:11:04 +0000 (13:11 -0300)]
13006: Test exposing the bug
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 15:38:35 +0000 (10:38 -0500)]
Merge branch '14495-crunch-docker-space' refs #14495
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 15:37:26 +0000 (10:37 -0500)]
14495: Add warnings when estimateDockerImageSize gets bad input
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 12 Dec 2018 20:21:51 +0000 (15:21 -0500)]
14360: Fix race between per-container lock and garbage collection.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 21:18:35 +0000 (16:18 -0500)]
Merge branch '11419-text-mode'
closes #11419
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Dec 2018 20:55:58 +0000 (17:55 -0300)]
14012: Enhance test coverage on _cached_manifest_valid() method
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Dec 2018 20:55:11 +0000 (17:55 -0300)]
14012: Split cache file name generation for readability
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 19:06:34 +0000 (14:06 -0500)]
Merge branch '14594-update-cwltool' refs #14594
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:41:12 +0000 (11:41 -0500)]
Merge branch '14538-async-write'
fixes #14538
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:40:13 +0000 (11:40 -0500)]
14594: Update to latest cwltool
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:38:35 +0000 (11:38 -0500)]
14538: Merge branch 'master' into 14538-async-write
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:37:40 +0000 (11:37 -0500)]
11419: Merge branch 'master' into 11419-text-mode
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:31:14 +0000 (11:31 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:25:38 +0000 (11:25 -0500)]
Merge branch '14476-cwl-missing-input' refs #14476
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:21:05 +0000 (11:21 -0500)]
14360: Kill containers whose priority drops to 0 while running.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:20:41 +0000 (11:20 -0500)]
14476: Remove redundant falsey check
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:12:28 +0000 (11:12 -0500)]
14495: Add dispatchcloud.EstimateScratchSpace()
Estimate size of Docker image based on collection size, and
incorporate that into disk space requirement.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Dec 2018 15:56:45 +0000 (12:56 -0300)]
14012: Fix test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 22:03:15 +0000 (17:03 -0500)]
14360: Add missing argument to -kill flag.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 21:44:24 +0000 (16:44 -0500)]
14360: Rename -detached -> -no-detach.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 21:26:50 +0000 (16:26 -0500)]
14476: Add test that submitting with missing parameters correctly gets error.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 21:20:28 +0000 (16:20 -0500)]
14360: Disable management APIs if config has no ManagementToken.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 21:01:08 +0000 (16:01 -0500)]
14360: Rename Workers -> CountWorkers.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 19:55:55 +0000 (14:55 -0500)]
14476: Fix RunnerTemplate
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 19:15:28 +0000 (14:15 -0500)]
14476: When creating a Runner, check input is valid before submitting
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 20:58:34 +0000 (15:58 -0500)]
Merge branch '14593-acr-crunch1' refs #14593
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 20:57:45 +0000 (15:57 -0500)]
14593: Fix typo.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 7 Dec 2018 20:48:30 +0000 (17:48 -0300)]
14012: Rephrases error message.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 20:43:16 +0000 (15:43 -0500)]
14593: Add note about broken crunch1 to upgrade docs.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 20:25:39 +0000 (15:25 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud
refs #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 20:24:52 +0000 (15:24 -0500)]
14360: Notify pool on worker shutdown.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 7 Dec 2018 20:03:04 +0000 (15:03 -0500)]
14593: Fix a-c-r when running on the "jobs" API
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 19:55:36 +0000 (14:55 -0500)]
14360: Fix container UUID missing in proc info file.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 7 Dec 2018 19:54:08 +0000 (14:54 -0500)]
14360: Use nonblocking mode when checking for stale lock.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Mon, 3 Dec 2018 21:46:11 +0000 (16:46 -0500)]
Add a few upgrade notes for the 1.3.0 release.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 6 Dec 2018 21:30:38 +0000 (16:30 -0500)]
Merge branch '14574-expression-fix' refs #14574
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Dec 2018 17:57:48 +0000 (14:57 -0300)]
14012: Do HEAD request on the oldest non-expired signature for cache validation
* Re-added single file expiration check for re-uploads
* Added tests for all cases
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 5 Dec 2018 19:59:27 +0000 (14:59 -0500)]
Merge branch '14584-runtime-user-reuse' refs #14584
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Dec 2018 19:18:54 +0000 (14:18 -0500)]
14584: Remove runtime_user_uuid and runtime_auth_scopes checks for reuse.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Dec 2018 18:16:33 +0000 (13:16 -0500)]
Merge branch '14583-no-dcpdh' refs #14583
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Dec 2018 16:42:43 +0000 (11:42 -0500)]
14583: Delete arv:dockerCollectionPDH from DockerRequirement in RunInSingleContainer
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Dec 2018 20:51:13 +0000 (17:51 -0300)]
Merge branch '14551-wb-login-as-token'
Closes #14551
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 4 Dec 2018 16:32:59 +0000 (11:32 -0500)]
Merge branch '14574-thread-count-1' refs #14574
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 4 Dec 2018 16:32:49 +0000 (11:32 -0500)]
Merge branch '14576-query-perf' refs #14576
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 4 Dec 2018 16:17:12 +0000 (11:17 -0500)]
14576: Use the 'in' test for user queries
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 4 Dec 2018 15:43:01 +0000 (10:43 -0500)]
14576: Adjust query for admins that filters out trashed items
refs #14576
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 4 Dec 2018 15:43:01 +0000 (10:43 -0500)]
14576: Adjust query for admins that filters out trashed items
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Tue, 4 Dec 2018 13:58:36 +0000 (08:58 -0500)]
Fix docker push command in run-build-docker-jobs-image.sh
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Mon, 3 Dec 2018 22:34:34 +0000 (17:34 -0500)]
14574: Ensure output callbacks take workflow lock
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 3 Dec 2018 21:29:24 +0000 (16:29 -0500)]
If a version tag is passed to run-build-docker-jobs-image.sh, actually use that
version of our codebase for the packages installed in the image.
run-build-docker-jobs-image.sh now also supports our ARVADOS_BUILDING_VERSION
and ARVADOS_BUILDING_ITERATION mechanism, so versions can be overridden that
way.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Mon, 3 Dec 2018 21:23:28 +0000 (16:23 -0500)]
14574: Default --thread-count=1 until threading is more fully baked.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 3 Dec 2018 19:55:54 +0000 (16:55 -0300)]
Merge branch 'master' into 14012-arvput-check-cache
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 3 Dec 2018 19:23:04 +0000 (16:23 -0300)]
14012: Early cached manifest validation by doing HEAD req on first block.
* Remove un-needed block expiration check and adapted test for this change
* Add local_store_head to keep client for testing purposes
* Fix failing test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 3 Dec 2018 17:00:39 +0000 (12:00 -0500)]
14560: Limit to_tsvector input to 8K.
refs #14560
refs #13752
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Sun, 2 Dec 2018 02:09:40 +0000 (21:09 -0500)]
Merge branch '14560-tsvector-too-long' refs #14560
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sat, 1 Dec 2018 21:11:28 +0000 (16:11 -0500)]
14560: Only index the first 1M bytes of ft-searchable data.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 30 Nov 2018 21:04:06 +0000 (16:04 -0500)]
Merge branch '14558-cwl-pkg-deps' refs #14558
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 30 Nov 2018 20:32:27 +0000 (15:32 -0500)]
14558: Version dependency fixes.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 30 Nov 2018 20:32:25 +0000 (15:32 -0500)]
11419: Support text modes in Collection.open().
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 30 Nov 2018 16:58:20 +0000 (11:58 -0500)]
Merge branch '14510-cwl-perf' refs #14510
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 30 Nov 2018 15:50:20 +0000 (10:50 -0500)]
14510: Bugfix order of precedence for setting collection cache size
Fix a couple other buggy tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 30 Nov 2018 14:25:47 +0000 (09:25 -0500)]
14510: Don't initialize workflow redundantly.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 30 Nov 2018 02:08:05 +0000 (21:08 -0500)]
Make sure the dev version prefix is based on the latest tag in the repo, not
the latest tag on the master branch (part 3). Make sure the change also works
in Python 3.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 29 Nov 2018 20:41:50 +0000 (15:41 -0500)]
14538: Fix racy tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 29 Nov 2018 20:15:42 +0000 (15:15 -0500)]
14538: Split inline func from sync() into commitBlock().
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 29 Nov 2018 20:12:25 +0000 (15:12 -0500)]
14538: Reduce max writeahead to 1.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Thu, 29 Nov 2018 19:49:31 +0000 (14:49 -0500)]
Make sure the dev version prefix is based on the latest tag in the repo,
not the latest tag on the master branch (part 2).
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 29 Nov 2018 19:34:25 +0000 (14:34 -0500)]
14538: Remove redundant condition.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log