arvados.git
3 years ago17863: Merge branch 'main' into 17863-bundler-update
Ward Vandewege [Thu, 22 Jul 2021 14:25:59 +0000 (10:25 -0400)]
17863: Merge branch 'main' into 17863-bundler-update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17863: further cleanup in our rails postinst scripts and documentation:
Ward Vandewege [Thu, 22 Jul 2021 13:02:27 +0000 (09:02 -0400)]
17863: further cleanup in our rails postinst scripts and documentation:

* replace `bundle exec` calls with the appropriate binstub
* update deprecated use of `bundle install --path` to avoid warning

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17962-bump-lib-pq'
Ward Vandewege [Wed, 21 Jul 2021 12:46:46 +0000 (08:46 -0400)]
Merge branch '17962-bump-lib-pq'

closes #17962

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17962: Merge branch 'main' into 17962-bump-lib-pq
Ward Vandewege [Wed, 21 Jul 2021 12:46:12 +0000 (08:46 -0400)]
17962: Merge branch 'main' into 17962-bump-lib-pq

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17813: Change default value of runtime_auth_scopes to []
Peter Amstutz [Tue, 20 Jul 2021 21:01:24 +0000 (17:01 -0400)]
17813: Change default value of runtime_auth_scopes to []

It is documented to be an array of strings, so having the default be
an object just seems to be a mistake.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17813: Fix tests
Peter Amstutz [Tue, 20 Jul 2021 21:01:08 +0000 (17:01 -0400)]
17813: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMake singularity suid in arvbox, crunch-dispatch-local runs as user
Peter Amstutz [Tue, 20 Jul 2021 20:28:30 +0000 (16:28 -0400)]
Make singularity suid in arvbox, crunch-dispatch-local runs as user

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17962: Bump the version of lib/pq to 1.10.2
Ward Vandewege [Tue, 20 Jul 2021 19:25:05 +0000 (15:25 -0400)]
17962: Bump the version of lib/pq to 1.10.2

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAnother doc tweak.
Ward Vandewege [Tue, 20 Jul 2021 17:08:46 +0000 (13:08 -0400)]
Another doc tweak.

refs #17464

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAdd some more clarifications to the doc page about restricting uploads
Ward Vandewege [Tue, 20 Jul 2021 15:53:27 +0000 (11:53 -0400)]
Add some more clarifications to the doc page about restricting uploads
and downloads.

refs #17464

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17813: Handle setting $HOME as a special case
Peter Amstutz [Tue, 20 Jul 2021 15:15:44 +0000 (11:15 -0400)]
17813: Handle setting $HOME as a special case

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17748-extra-claims-take2'
Nico Cesar [Tue, 20 Jul 2021 14:07:09 +0000 (10:07 -0400)]
Merge branch '17748-extra-claims-take2'

closes #17748

Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>

3 years agoFix typos in the documentation.
Ward Vandewege [Tue, 20 Jul 2021 12:47:52 +0000 (08:47 -0400)]
Fix typos in the documentation.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoOIDC given name / family name fields support
Nico Cesar [Mon, 19 Jul 2021 22:03:38 +0000 (18:03 -0400)]
OIDC given name / family name fields support

Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@nicocesar.com>

3 years ago17813: Upload .sif file to cache project & read it from keep
Peter Amstutz [Mon, 19 Jul 2021 20:13:33 +0000 (16:13 -0400)]
17813: Upload .sif file to cache project & read it from keep

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17863: update to using bundler 2.2.19 everywhere.
Ward Vandewege [Mon, 19 Jul 2021 15:17:46 +0000 (11:17 -0400)]
17863: update to using bundler 2.2.19 everywhere.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix arvbox demo image build.
Ward Vandewege [Mon, 19 Jul 2021 14:25:56 +0000 (10:25 -0400)]
Fix arvbox demo image build.

refs #17816

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17813: Singularity image caching wip
Peter Amstutz [Fri, 16 Jul 2021 21:26:31 +0000 (17:26 -0400)]
17813: Singularity image caching wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17756: Review feedback.
Tom Clegg [Fri, 16 Jul 2021 20:42:46 +0000 (16:42 -0400)]
17756: Review feedback.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17573-export-storage-classes' into main. Refs #17573
Lucas Di Pentima [Fri, 16 Jul 2021 19:03:20 +0000 (16:03 -0300)]
Merge branch '17573-export-storage-classes' into main. Refs #17573

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '17816-singularity-cwd' into main refs #17816
Peter Amstutz [Fri, 16 Jul 2021 15:27:06 +0000 (11:27 -0400)]
Merge branch '17816-singularity-cwd' into main refs #17816

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17394-collectionfs-storage-class' into main
Tom Clegg [Fri, 16 Jul 2021 15:23:31 +0000 (11:23 -0400)]
Merge branch '17394-collectionfs-storage-class' into main

closes #17394

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17816: Sort bind mounts on singularity command line
Peter Amstutz [Fri, 16 Jul 2021 15:00:57 +0000 (11:00 -0400)]
17816: Sort bind mounts on singularity command line

Need to mount parent directories before we can mount things inside
them.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: Add test.
Tom Clegg [Fri, 16 Jul 2021 14:44:57 +0000 (10:44 -0400)]
17816: Add test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17816: Set the current working directory in the singularity container
Peter Amstutz [Thu, 15 Jul 2021 17:50:22 +0000 (13:50 -0400)]
17816: Set the current working directory in the singularity container

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: crunch-dispatch-local uses cluster config.
Peter Amstutz [Thu, 15 Jul 2021 19:58:45 +0000 (15:58 -0400)]
17816: crunch-dispatch-local uses cluster config.

Added upgrade note.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: Fix tests
Peter Amstutz [Wed, 14 Jul 2021 20:47:45 +0000 (16:47 -0400)]
17816: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: Make singularity-in-arvbox work
Peter Amstutz [Wed, 14 Jul 2021 20:39:02 +0000 (16:39 -0400)]
17816: Make singularity-in-arvbox work

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: Add --runtime-engine to crunch-dispatch-local and crunch-dispatch-slurm
Peter Amstutz [Wed, 14 Jul 2021 20:37:19 +0000 (16:37 -0400)]
17816: Add --runtime-engine to crunch-dispatch-local and crunch-dispatch-slurm

refs #17816

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoDon't pull arvbox checkouts after clone
Peter Amstutz [Wed, 14 Jul 2021 18:50:07 +0000 (14:50 -0400)]
Don't pull arvbox checkouts after clone

We already have latest and tags/detached HEADS can't be pulled anyway
(and they fail, which is the real problem).

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoarvbox docs include a docker image tag
Peter Amstutz [Wed, 14 Jul 2021 18:12:08 +0000 (14:12 -0400)]
arvbox docs include a docker image tag

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoAdd ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox
Peter Amstutz [Wed, 14 Jul 2021 17:57:37 +0000 (13:57 -0400)]
Add ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoFix "wrong bundler" error starting API server in arvbox
Peter Amstutz [Wed, 14 Jul 2021 15:19:58 +0000 (11:19 -0400)]
Fix "wrong bundler" error starting API server in arvbox

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17816: Close stdin/stdout/stderr from main instead of executor.
Tom Clegg [Fri, 16 Jul 2021 14:24:42 +0000 (10:24 -0400)]
17816: Close stdin/stdout/stderr from main instead of executor.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17394: Check by_id dir obeys storage classes.
Tom Clegg [Thu, 15 Jul 2021 14:13:39 +0000 (10:13 -0400)]
17394: Check by_id dir obeys storage classes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17394: Update callback name.
Tom Clegg [Thu, 15 Jul 2021 13:44:17 +0000 (09:44 -0400)]
17394: Update callback name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17394: Use BlockWrite interface in crunch-run.
Tom Clegg [Thu, 15 Jul 2021 13:42:21 +0000 (09:42 -0400)]
17394: Use BlockWrite interface in crunch-run.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17394: Test BlockWrite storage classes precedence.
Tom Clegg [Thu, 15 Jul 2021 13:27:25 +0000 (09:27 -0400)]
17394: Test BlockWrite storage classes precedence.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17573: Adds test storage classes to arvados-server test mode.
Lucas Di Pentima [Thu, 15 Jul 2021 01:22:37 +0000 (22:22 -0300)]
17573: Adds test storage classes to arvados-server test mode.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17573: Exposes storage classes for every configured volume.
Lucas Di Pentima [Thu, 8 Jul 2021 19:31:27 +0000 (16:31 -0300)]
17573: Exposes storage classes for every configured volume.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17394: Propagate storage classes when writing data via collectionfs.
Tom Clegg [Wed, 14 Jul 2021 20:52:12 +0000 (16:52 -0400)]
17394: Propagate storage classes when writing data via collectionfs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoDon't pull arvbox checkouts after clone
Peter Amstutz [Wed, 14 Jul 2021 18:50:07 +0000 (14:50 -0400)]
Don't pull arvbox checkouts after clone

We already have latest and tags/detached HEADS can't be pulled anyway
(and they fail, which is the real problem).

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoarvbox docs include a docker image tag
Peter Amstutz [Wed, 14 Jul 2021 18:12:08 +0000 (14:12 -0400)]
arvbox docs include a docker image tag

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoAdd ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox
Peter Amstutz [Wed, 14 Jul 2021 17:57:37 +0000 (13:57 -0400)]
Add ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoFix "wrong bundler" error starting API server in arvbox
Peter Amstutz [Wed, 14 Jul 2021 15:19:58 +0000 (11:19 -0400)]
Fix "wrong bundler" error starting API server in arvbox

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoarvbox uses react-scripts, refs #17782
Peter Amstutz [Tue, 13 Jul 2021 21:11:57 +0000 (17:11 -0400)]
arvbox uses react-scripts, refs #17782

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17913-addressable-upgrade' into main. Closes #17913
Lucas Di Pentima [Tue, 13 Jul 2021 19:55:30 +0000 (16:55 -0300)]
Merge branch '17913-addressable-upgrade' into main. Closes #17913

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17913: Upgrades 'addressable' gem to 2.8.0
Lucas Di Pentima [Tue, 13 Jul 2021 19:14:49 +0000 (16:14 -0300)]
17913: Upgrades 'addressable' gem to 2.8.0

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '17782-nodejs-update' into main
Lucas Di Pentima [Mon, 12 Jul 2021 15:14:28 +0000 (12:14 -0300)]
Merge branch '17782-nodejs-update' into main
Refs #17782

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoPin networkx to avoid new version that pulls in scipy/numpy
Peter Amstutz [Fri, 9 Jul 2021 14:54:30 +0000 (10:54 -0400)]
Pin networkx to avoid new version that pulls in scipy/numpy

refs #17879

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoAdd missing link to "restricting-upload-download" to doc refs #17464
Peter Amstutz [Thu, 8 Jul 2021 21:02:36 +0000 (17:02 -0400)]
Add missing link to "restricting-upload-download" to doc refs #17464

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17879-update-schema-salad' into main refs #17879
Peter Amstutz [Thu, 8 Jul 2021 19:24:55 +0000 (15:24 -0400)]
Merge branch '17879-update-schema-salad' into main refs #17879

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17879: Add test that acr doesn't fail on sbg fields
Peter Amstutz [Thu, 8 Jul 2021 19:20:51 +0000 (15:20 -0400)]
17879: Add test that acr doesn't fail on sbg fields

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17879: Default --thread-count=0, upgrade schema-salad
Peter Amstutz [Thu, 8 Jul 2021 18:36:00 +0000 (14:36 -0400)]
17879: Default --thread-count=0, upgrade schema-salad

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoPut the default arvados-cwl-runner --thread-count back down to 1.
Peter Amstutz [Wed, 7 Jul 2021 20:23:27 +0000 (16:23 -0400)]
Put the default arvados-cwl-runner --thread-count back down to 1.

On account of reports of workflows deadlocking.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17858-cwl-exprtool-defaults' into main refs #17858
Peter Amstutz [Wed, 7 Jul 2021 20:18:58 +0000 (16:18 -0400)]
Merge branch '17858-cwl-exprtool-defaults' into main refs #17858

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17858: Tweak logic to avoid KeyError
Peter Amstutz [Wed, 7 Jul 2021 20:11:54 +0000 (16:11 -0400)]
17858: Tweak logic to avoid KeyError

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17705-adc-arch-doc'
Tom Clegg [Wed, 7 Jul 2021 19:10:13 +0000 (15:10 -0400)]
Merge branch '17705-adc-arch-doc'

closes #17705

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17782: Updates nodejs to v12, as required by workbench2.
Lucas Di Pentima [Wed, 7 Jul 2021 18:50:38 +0000 (15:50 -0300)]
17782: Updates nodejs to v12, as required by workbench2.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17858: Add ExpressionTool to classes checked for ids when visiting
Peter Amstutz [Wed, 7 Jul 2021 14:02:05 +0000 (10:02 -0400)]
17858: Add ExpressionTool to classes checked for ids when visiting

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17858: Integration test passes
Peter Amstutz [Wed, 7 Jul 2021 17:42:13 +0000 (13:42 -0400)]
17858: Integration test passes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17858: Add test to reproduce bug
Peter Amstutz [Wed, 7 Jul 2021 13:51:09 +0000 (09:51 -0400)]
17858: Add test to reproduce bug

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17841-add-duration'
Ward Vandewege [Tue, 6 Jul 2021 21:37:16 +0000 (17:37 -0400)]
Merge branch '17841-add-duration'

closes #17841

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17841: Merge branch 'main' into 17841-add-duration
Ward Vandewege [Tue, 6 Jul 2021 21:36:43 +0000 (17:36 -0400)]
17841: Merge branch 'main' into 17841-add-duration

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17841: update documentation
Ward Vandewege [Tue, 6 Jul 2021 21:36:13 +0000 (17:36 -0400)]
17841: update documentation

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17756: Merge branch 'main'
Tom Clegg [Tue, 6 Jul 2021 13:28:47 +0000 (09:28 -0400)]
17756: Merge branch 'main'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17853-fix-write-with-rlock' into main
Tom Clegg [Tue, 6 Jul 2021 13:11:01 +0000 (09:11 -0400)]
Merge branch '17853-fix-write-with-rlock' into main

fixes #17853

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Add arvados-dispatch-lsf install doc page.
Tom Clegg [Mon, 5 Jul 2021 20:56:45 +0000 (16:56 -0400)]
17756: Add arvados-dispatch-lsf install doc page.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17705: Improve InstanceSetID wording, update link to mgmt API docs.
Tom Clegg [Mon, 5 Jul 2021 18:46:03 +0000 (14:46 -0400)]
17705: Improve InstanceSetID wording, update link to mgmt API docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17853: Fix map write when only RLock held.
Tom Clegg [Mon, 5 Jul 2021 18:32:39 +0000 (14:32 -0400)]
17853: Fix map write when only RLock held.

Update DebugLocksPanicMode to check RLock/Lock as appropriate.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Fix tests to accommodate sudo and added bjobs args.
Tom Clegg [Mon, 5 Jul 2021 14:10:11 +0000 (10:10 -0400)]
17756: Fix tests to accommodate sudo and added bjobs args.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Add DispatchLSF to health aggregator test setup.
Tom Clegg [Mon, 5 Jul 2021 13:59:36 +0000 (09:59 -0400)]
17756: Add DispatchLSF to health aggregator test setup.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Build arvados-dispatch-lsf package.
Tom Clegg [Sun, 4 Jul 2021 17:34:16 +0000 (13:34 -0400)]
17756: Build arvados-dispatch-lsf package.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Add checkLsfQueueForOrphans.
Tom Clegg [Fri, 2 Jul 2021 21:08:08 +0000 (17:08 -0400)]
17756: Add checkLsfQueueForOrphans.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Rewrite lsfqueue "wait for next update".
Tom Clegg [Fri, 2 Jul 2021 21:07:27 +0000 (17:07 -0400)]
17756: Rewrite lsfqueue "wait for next update".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17756: Add lsf dispatcher.
Tom Clegg [Fri, 2 Jul 2021 17:27:46 +0000 (13:27 -0400)]
17756: Add lsf dispatcher.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoFix api server tests.
Ward Vandewege [Fri, 2 Jul 2021 01:24:45 +0000 (21:24 -0400)]
Fix api server tests.

refs #17817

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix keepproxy tests.
Ward Vandewege [Thu, 1 Jul 2021 21:36:09 +0000 (17:36 -0400)]
Fix keepproxy tests.

refs #17464

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix arv-git-httpd tests.
Ward Vandewege [Thu, 1 Jul 2021 21:17:10 +0000 (17:17 -0400)]
Fix arv-git-httpd tests.

refs #17817

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17395-container-output-storage-class' into main
Peter Amstutz [Thu, 1 Jul 2021 20:13:58 +0000 (16:13 -0400)]
Merge branch '17395-container-output-storage-class' into main

refs #17395

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17395: Add missing migration file
Peter Amstutz [Thu, 1 Jul 2021 19:37:20 +0000 (15:37 -0400)]
17395: Add missing migration file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17395: Update docs for newer storage classes behavior.
Peter Amstutz [Thu, 1 Jul 2021 20:10:30 +0000 (16:10 -0400)]
17395: Update docs for newer storage classes behavior.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoThe bleeding edge branch is now called 'main'.
Ward Vandewege [Thu, 1 Jul 2021 18:00:01 +0000 (14:00 -0400)]
The bleeding edge branch is now called 'main'.

refs #17817

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoThe bleeding edge branch for arvados-workbench2 is now called 'main'.
Ward Vandewege [Thu, 1 Jul 2021 16:57:02 +0000 (12:57 -0400)]
The bleeding edge branch for arvados-workbench2 is now called 'main'.

refs #17817

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17778-doc-update'
Ward Vandewege [Thu, 1 Jul 2021 13:24:17 +0000 (09:24 -0400)]
Merge branch '17778-doc-update'

closes #17778

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17778: Merge branch 'master' into 17778-doc-update
Ward Vandewege [Thu, 1 Jul 2021 13:23:45 +0000 (09:23 -0400)]
17778: Merge branch 'master' into 17778-doc-update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17464-download-activity' refs #17464
Peter Amstutz [Wed, 30 Jun 2021 19:49:01 +0000 (15:49 -0400)]
Merge branch '17464-download-activity' refs #17464

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17464: Couple of doc fixes
Peter Amstutz [Wed, 30 Jun 2021 19:47:16 +0000 (15:47 -0400)]
17464: Couple of doc fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17821-provision-dump-config-parameter'
Javier Bértoli [Wed, 30 Jun 2021 18:03:01 +0000 (15:03 -0300)]
Merge branch '17821-provision-dump-config-parameter'

closes #17821
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years ago17821: Add a parameter to provision.sh to dump the configuration
Javier Bértoli [Thu, 17 Jun 2021 19:50:16 +0000 (16:50 -0300)]
17821: Add a parameter to provision.sh to dump the configuration

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years ago17395: Update documentation. Add an additional test.
Peter Amstutz [Wed, 30 Jun 2021 14:30:38 +0000 (10:30 -0400)]
17395: Update documentation.  Add an additional test.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17841: address review comments.
Ward Vandewege [Tue, 29 Jun 2021 21:36:37 +0000 (17:36 -0400)]
17841: address review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17395: Add tests. Don't include storage classes in full text search
Peter Amstutz [Tue, 29 Jun 2021 20:10:47 +0000 (16:10 -0400)]
17395: Add tests.  Don't include storage classes in full text search

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17395: Add OutputStorageClasses support to crunch-run
Peter Amstutz [Tue, 29 Jun 2021 19:24:06 +0000 (15:24 -0400)]
17395: Add OutputStorageClasses support to crunch-run

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17841: add container duration to the totals in the csv files. Reduce
Ward Vandewege [Tue, 29 Jun 2021 17:26:23 +0000 (13:26 -0400)]
17841: add container duration to the totals in the csv files. Reduce
       cost precision in totals to 1 cent.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17395: Add output_storage_classes to container and container_request
Peter Amstutz [Mon, 28 Jun 2021 19:58:57 +0000 (15:58 -0400)]
17395: Add output_storage_classes to container and container_request

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17829-remove-omniauth' refs #17829
Peter Amstutz [Mon, 28 Jun 2021 16:17:39 +0000 (12:17 -0400)]
Merge branch '17829-remove-omniauth' refs #17829

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17829: Fix test
Peter Amstutz [Thu, 24 Jun 2021 17:17:06 +0000 (13:17 -0400)]
17829: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17829: Fix test
Peter Amstutz [Thu, 24 Jun 2021 15:17:04 +0000 (11:17 -0400)]
17829: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '17833-arvput-cleaner-errors'
Lucas Di Pentima [Thu, 24 Jun 2021 14:58:11 +0000 (11:58 -0300)]
Merge branch '17833-arvput-cleaner-errors'
Closes #17833

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>