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17858: Add ExpressionTool to classes checked for ids when visiting
author
Peter Amstutz <peter.amstutz@curii.com>
Wed, 7 Jul 2021 14:02:05 +0000
(10:02 -0400)
committer
Peter Amstutz <peter.amstutz@curii.com>
Wed, 7 Jul 2021 17:47:39 +0000
(13:47 -0400)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
sdk/cwl/arvados_cwl/runner.py
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diff --git
a/sdk/cwl/arvados_cwl/runner.py
b/sdk/cwl/arvados_cwl/runner.py
index 7664abef7c52ffe95f3c114ac1ba1ee9d833f8f9..9dc73f52ffdba57e33c80c3275bfa5a9426e8780 100644
(file)
--- a/
sdk/cwl/arvados_cwl/runner.py
+++ b/
sdk/cwl/arvados_cwl/runner.py
@@
-471,7
+471,7
@@
def packed_workflow(arvrunner, tool, merged_map):
def visit(v, cur_id):
if isinstance(v, dict):
- if v.get("class") in ("CommandLineTool", "Workflow"):
+ if v.get("class") in ("CommandLineTool", "Workflow"
, "ExpressionTool"
):
if tool.metadata["cwlVersion"] == "v1.0" and "id" not in v:
raise SourceLine(v, None, Exception).makeError("Embedded process object is missing required 'id' field, add an 'id' or use to cwlVersion: v1.1")
if "id" in v: