Peter Amstutz [Thu, 19 Oct 2023 18:26:44 +0000 (14:26 -0400)]
Merge branch '21030-update-perm-cte' refs #21030
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 17 Oct 2023 22:53:08 +0000 (18:53 -0400)]
Merge branch '21055-sysctl-in-docker'
closes #21055
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 17 Oct 2023 19:03:54 +0000 (16:03 -0300)]
Merge branch '19140-service-acct-creation-doc'. Closes #19140
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 17 Oct 2023 19:03:00 +0000 (16:03 -0300)]
19140: Links to scoped token doc page, mentions expires_at field.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Tue, 17 Oct 2023 18:54:57 +0000 (14:54 -0400)]
21055: Add debian 12 codename to fix docker install.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 17 Oct 2023 18:54:32 +0000 (14:54 -0400)]
21055: Fix unreported error due to shadowed err variable.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 17 Oct 2023 18:20:34 +0000 (14:20 -0400)]
21055: Fix sysctl usage to accommodate running in docker container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 17 Oct 2023 15:49:43 +0000 (12:49 -0300)]
Merge branch '21055-arvados-server-install-fix'. Closes #21055
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Fri, 13 Oct 2023 16:06:00 +0000 (12:06 -0400)]
21030: Restore SET LOCAL enable_mergejoin to false
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 13 Oct 2023 15:24:18 +0000 (11:24 -0400)]
21030: Add index_materialized_permissions_target_is_not_user
See comment on 20231013000000_compute_permission_index.rb
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Thu, 12 Oct 2023 18:52:55 +0000 (14:52 -0400)]
Merge branch '19821-collection-docstrings'
Closes #19821.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 12 Oct 2023 18:52:31 +0000 (14:52 -0400)]
19821: Fix module typo
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 12 Oct 2023 18:06:19 +0000 (14:06 -0400)]
19821: Convert CollectionWriter.open docstring to Markdown
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 12 Oct 2023 18:00:49 +0000 (14:00 -0400)]
19821: Fully qualify docstring types
This gets pdoc to hyperlink the type.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Thu, 12 Oct 2023 14:00:13 +0000 (10:00 -0400)]
Merge branch '20933-arv-copy-cwl' refs #20933
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 12 Oct 2023 13:59:31 +0000 (09:59 -0400)]
20933: Only pin zipp on Python 3.7
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 20:57:59 +0000 (16:57 -0400)]
20933: Code cleanups
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 20:32:50 +0000 (16:32 -0400)]
20933: Use [0-9] instead of \d in regex
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 5 Oct 2023 20:21:39 +0000 (16:21 -0400)]
20933: Update arv-copy doc to mention it requires arvados-cwl-runner.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 5 Oct 2023 19:52:10 +0000 (15:52 -0400)]
20933: Handle errors when calling arvados-cwl-runner
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 5 Oct 2023 13:39:51 +0000 (09:39 -0400)]
20933: Add --print-keep-deps test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 4 Oct 2023 21:50:05 +0000 (17:50 -0400)]
20933: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 7 Sep 2023 20:43:45 +0000 (16:43 -0400)]
20933: Copies collections reported by a-c-r
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 7 Sep 2023 20:30:14 +0000 (16:30 -0400)]
20933: Use acrContainerImage where available
also refs #20592
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 7 Sep 2023 18:37:05 +0000 (14:37 -0400)]
20933: Adding --print-keep-deps to assist arv-copy
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Wed, 11 Oct 2023 16:40:55 +0000 (12:40 -0400)]
19821: Bugfix type declarations for compatibility with Python<3.9
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 11 Oct 2023 16:40:18 +0000 (12:40 -0400)]
19821: Improve consistency of Properties type
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Tue, 10 Oct 2023 20:24:12 +0000 (16:24 -0400)]
19821: Document the arvados.collection module
* Add docstrings and type signatures to all public methods.
* Mark all deprecated classes and methods. Move them to the bottom of
the module for better organization of web documentation.
* Mark all internal classes and methods.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 14:25:41 +0000 (10:25 -0400)]
Close span
refs #20937
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 14:16:44 +0000 (10:16 -0400)]
Remove duplicated ~$
refs #20937
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 13:20:29 +0000 (09:20 -0400)]
Merge branch '20937-arv-copy-http' refs #20937
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 11 Oct 2023 13:19:24 +0000 (09:19 -0400)]
20937: Simplify use of logger.error
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 10 Oct 2023 17:49:15 +0000 (13:49 -0400)]
20937: Improve error handling
Also clean up docs a bit
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Tue, 10 Oct 2023 15:29:34 +0000 (12:29 -0300)]
Merge branch '20949-wb-redirects-improvements'. Closes #20949
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 10 Oct 2023 15:17:02 +0000 (12:17 -0300)]
21055: Replaces %w with %v for error logging.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 10 Oct 2023 14:45:29 +0000 (11:45 -0300)]
21055: Don't exit when failing to set inotify.max_user_watches.
Docker containers mount procfs as read-only and inherit this setting from
their host: https://github.com/coder/code-server/issues/628
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Mon, 9 Oct 2023 14:42:44 +0000 (11:42 -0300)]
19140: Adds admin documentation about service account management.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 6 Oct 2023 20:57:22 +0000 (17:57 -0300)]
19140: Adds TOC to User Management Admin doc page.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 6 Oct 2023 17:23:20 +0000 (14:23 -0300)]
20949: Adds query string based redirections from wb1's actions controller.
Matches '/actions?uuid=X' URLs and redirects to an appropriate WB2 URL.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Fri, 6 Oct 2023 14:42:11 +0000 (10:42 -0400)]
20937: Update documentation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 6 Oct 2023 14:01:40 +0000 (10:01 -0400)]
20937: Return same tuple consistently from http_to_keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 20:45:44 +0000 (16:45 -0400)]
20937: fix deadlock with duplicated blocks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 20:10:08 +0000 (16:10 -0400)]
20937: Set limit on 'put' queue
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 19:57:53 +0000 (15:57 -0400)]
20937: Fix in -> is typo
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 19:56:18 +0000 (15:56 -0400)]
20937: Handle None result
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 17:02:42 +0000 (13:02 -0400)]
20937: Fix pathmapper use of http_to_keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 11 Sep 2023 14:02:26 +0000 (10:02 -0400)]
20937: Add error handling to threaded collection copy
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 8 Sep 2023 02:46:44 +0000 (22:46 -0400)]
20937: Better handling of repeated blocks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 8 Sep 2023 02:33:51 +0000 (22:33 -0400)]
20937: Fix progress writer
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 5 Oct 2023 19:14:31 +0000 (15:14 -0400)]
20937: Parallel collection copy
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 8 Sep 2023 01:52:14 +0000 (21:52 -0400)]
20937: Add http import capability to arv-copy
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 5 Oct 2023 15:46:31 +0000 (11:46 -0400)]
Merge branch 'main' from workbench2.git
refs #18874
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lisa Knox [Thu, 5 Oct 2023 14:45:32 +0000 (10:45 -0400)]
Merge branch '21002-restore-banner-adjust-width'
closes #21002
Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lucas Di Pentima [Tue, 3 Oct 2023 20:52:35 +0000 (17:52 -0300)]
Merge branch '21033-wb2-dependency-upgrades'. Closes #21033
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 3 Oct 2023 18:59:23 +0000 (15:59 -0300)]
21033: Applies dependency upgrades.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Tue, 3 Oct 2023 13:54:30 +0000 (09:54 -0400)]
Merge branch '20990-name-btree' refs #20990
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 2 Oct 2023 21:09:05 +0000 (17:09 -0400)]
21030: Use a CTE instead of temporary table for trash and frozen
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 2 Oct 2023 20:37:53 +0000 (16:37 -0400)]
21030: Use a CTE instead of temporary table for update_permissions
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Fri, 29 Sep 2023 22:48:41 +0000 (18:48 -0400)]
21028: Build Ruby from source on rocky8
Same rationale as
fe8da34676be7c6fbb1042fcfcabee19bfa424d0.
Refs #21028.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 19:35:21 +0000 (15:35 -0400)]
Note that groups/contents API can accept a user UUID
This is very helpful for generalizing project walk code and I don't
think it's documented anywhere.
No issue #.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 19:23:56 +0000 (15:23 -0400)]
21028: Build Ruby from source on rocky8
Without this, RVM downloads a binary Ruby with a bunch of configuration
options turned on. This can lead to problems building extensions when
Ruby thinks a certain feature is supported but our Docker image doesn't
have the headers to support it. Right now we're seeing that in the zlib
gem: it has extra code to turn on when Ruby supports Valgrind, but we
don't have the Valgrind headers necessary to build that code.
Closes #21028.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 19:22:13 +0000 (15:22 -0400)]
20878: Bugfix missing variable sigil
Without this, the test compared against the constant string "TARGET" and
never tried to reuse built RPMs.
Refs #20878.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Fri, 29 Sep 2023 17:46:58 +0000 (13:46 -0400)]
Merge branch '18874-merge-wb2'
refs #18874
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Fri, 29 Sep 2023 15:28:50 +0000 (11:28 -0400)]
Merge branch '19818-api-pydoc'
Closes #19818.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 14:21:50 +0000 (10:21 -0400)]
20932: Update API index for Workbench 2 default
* Just call it "Workbench," not "Workbench 2" or "new Workbench."
* Remove reference to Workbench 1 Advanced tab.
Refs #20932.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 02:04:46 +0000 (22:04 -0400)]
19818: Document arvados.api module
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 01:35:38 +0000 (21:35 -0400)]
19818: Deprecate arvados.api.OrderedJsonModel
Python dictionaries started preserving insertion order in CPython 3.6,
and that became a specified feature of the language in Python 3.7. That
means the default model has the same behavior as OrderedJsonModel on
every platform supported by Arvados. Deprecate the class accordingly.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 28 Sep 2023 23:56:43 +0000 (19:56 -0400)]
Merge branch '20885-pdoc-style'
Closes #20885.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Lisa Knox [Thu, 28 Sep 2023 19:23:33 +0000 (15:23 -0400)]
21002: set banner maxWidth to 50% Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Thu, 28 Sep 2023 16:03:05 +0000 (12:03 -0400)]
21002: fixed notif menu clickboxes Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Tom Clegg [Thu, 28 Sep 2023 15:24:01 +0000 (11:24 -0400)]
18874: Merge commit '
6f8dcb2b13f3058db656908fb26b09e23b527f08' into 18874-merge-wb2
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lisa Knox [Thu, 28 Sep 2023 14:30:25 +0000 (10:30 -0400)]
21002: fixed tooltip focus on notificatoin icon Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Brett Smith [Mon, 25 Sep 2023 20:26:46 +0000 (16:26 -0400)]
20885: Update PySDK docstrings after pdoc migration
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 25 Sep 2023 21:31:24 +0000 (17:31 -0400)]
20885: Add our own pdoc wrapper
Mainly to support admonitions. See the documentation and comments in
pysdk_pdoc.py for details.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 25 Sep 2023 20:40:56 +0000 (16:40 -0400)]
20885: Clean up run-tests Python install env
Most of this code duplicates sdk/python/setup.py and should no longer be
necessary with modern pip. Invoking pip so often also makes it slower
than it needs to be.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Mon, 25 Sep 2023 18:17:41 +0000 (14:17 -0400)]
Merge branch '20862-google-api-client'
fixes #20862
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 18:14:37 +0000 (14:14 -0400)]
20862: Update docs on google-api-client fork.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 15:56:48 +0000 (11:56 -0400)]
20862: Emit notice about skipping sdk/ruby-google-api-client tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 15:46:36 +0000 (11:46 -0400)]
20862: Merge branch 'main' into 20862-google-api-client
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Fri, 22 Sep 2023 20:22:44 +0000 (16:22 -0400)]
20990: Add btree index on name for groups & collections
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 21 Sep 2023 13:14:54 +0000 (09:14 -0400)]
Fix 2.7.0 date in upgrading notes, refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 21:15:20 +0000 (17:15 -0400)]
Need to have nvidia installed so singularity detects it
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 21:08:10 +0000 (17:08 -0400)]
Check out singularity from git to get submodules
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 20:56:15 +0000 (16:56 -0400)]
Add singularity build deps libglib2.0-dev and libseccomp-dev to packer
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 17:23:22 +0000 (13:23 -0400)]
Set 2.7.0 release date, refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 19 Sep 2023 21:24:47 +0000 (17:24 -0400)]
Fix cwltest version pin, refs #20973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 15:29:27 +0000 (11:29 -0400)]
Merge branch '20973-cwltest' refs #20973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:45:02 +0000 (10:45 -0400)]
Merge branch '20497-updating-wgs-tutorial'
Closes #20497.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:44:04 +0000 (10:44 -0400)]
20497: Typo fixes
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:35:42 +0000 (10:35 -0400)]
20497: Give brief instructions for reviewing subprocess output
This was previously discussed in the same paragraph as the main workflow
download collection. Moving it here means we don't jump back and forth
as much between the main workflow process and a subprocess.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:37:52 +0000 (09:37 -0400)]
20497: Clarify collection view/download
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:34:55 +0000 (09:34 -0400)]
20497: Clean up section 5 opening paragraph
There used to be multiple navigation options listed here. Now that
there's only one, the introduction needs to be updated to match.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 13:32:11 +0000 (09:32 -0400)]
Pin cwltest version that we package, refs #20973
The subsequent release of cwltest confirms that files exist on disk,
since our files are in Keep, all the tests fail. We should add
[optional] Arvados support to cwltest so it can access Keep but for
the time being just package the last working version.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:31:14 +0000 (09:31 -0400)]
20497: Direct the reader to the tutorial project via Public Favorites
Unfortunately searching for the project raises a couple of issues:
* The search results return two copies of the project, one from pirca
and one from jutro. If the reader picks the jutro one, they'll be
prompted to log in again, losing their progress and kicking them off the
happy path.
* The search results also return the finished demo workflow process we
publish for people, "(start here) Example WGS processing workflow". This
is attractive to people because it says "(start here)", has a bright
green "Completed" badge next to it, and the difference between a process
and a project may not be clear to people who are just getting started
with Arvados.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:29:24 +0000 (09:29 -0400)]
20497: Add missing paragraph break
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:28:20 +0000 (09:28 -0400)]
20497: Make button text consistent with Workbench 2 UI
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 13:21:13 +0000 (09:21 -0400)]
Merge branch '20955-log-update-doc' refs #20955
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 02:47:57 +0000 (22:47 -0400)]
20955: Typo fixes throughout
* "superceded"→"superseded"
* "via[d] the" repetition
* "database" echoed twice in one sentence
* Link hardcoded to doc.arvados.org→site.baseurl
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Fri, 15 Sep 2023 20:47:12 +0000 (16:47 -0400)]
20955: Update documentation about the new and legacy container logging systems
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 15 Sep 2023 17:47:51 +0000 (13:47 -0400)]
20955: Reorder upgrade notes in rough order of disruptiveness
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log