arvados.git
13 months ago20300: Update exec_query bind vars usage for Rails 7.
Tom Clegg [Thu, 21 Sep 2023 18:56:21 +0000 (14:56 -0400)]
20300: Update exec_query bind vars usage for Rails 7.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update time.to_s(:db) to to_fs(:db).
Tom Clegg [Thu, 21 Sep 2023 15:50:19 +0000 (11:50 -0400)]
20300: Update time.to_s(:db) to to_fs(:db).

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Delete obsolete websocket stub.
Tom Clegg [Thu, 21 Sep 2023 15:49:52 +0000 (11:49 -0400)]
20300: Delete obsolete websocket stub.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix missing imports in initializers.
Tom Clegg [Thu, 21 Sep 2023 15:49:27 +0000 (11:49 -0400)]
20300: Fix missing imports in initializers.

Autoload no longer works in initializers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Add sprockets-rails.
Tom Clegg [Thu, 21 Sep 2023 02:18:33 +0000 (22:18 -0400)]
20300: Add sprockets-rails.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Rail 7.0 app:update.
Tom Clegg [Thu, 21 Sep 2023 02:06:34 +0000 (22:06 -0400)]
20300: Rail 7.0 app:update.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update to Rails 7.0.
Tom Clegg [Thu, 21 Sep 2023 01:19:18 +0000 (21:19 -0400)]
20300: Update to Rails 7.0.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Use Rails 6.1 config defaults.
Tom Clegg [Thu, 21 Sep 2023 02:05:55 +0000 (22:05 -0400)]
20300: Use Rails 6.1 config defaults.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Remove config overrides from Rails 5.0 upgrade.
Tom Clegg [Tue, 19 Sep 2023 15:10:56 +0000 (11:10 -0400)]
20300: Remove config overrides from Rails 5.0 upgrade.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Use Rails 6.0 config defaults.
Tom Clegg [Thu, 21 Sep 2023 02:05:32 +0000 (22:05 -0400)]
20300: Use Rails 6.0 config defaults.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update symbols to strings in relations.
Tom Clegg [Tue, 19 Sep 2023 14:04:16 +0000 (10:04 -0400)]
20300: Update symbols to strings in relations.

In Rails 6.1 the column names are converted to strings internally, so
checking for "foreign_key == :owner_uuid" no longer works.

Using symbols continues to work when declaring relations, but they are
updated to strings anyway for clarity, and to match
canonical/documented usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Use Rails 5.2 config defaults.
Tom Clegg [Tue, 19 Sep 2023 13:44:52 +0000 (09:44 -0400)]
20300: Use Rails 5.2 config defaults.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Rail 6.1 app:update.
Tom Clegg [Tue, 19 Sep 2023 04:04:45 +0000 (00:04 -0400)]
20300: Rail 6.1 app:update.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update bundle to rails 6.1.
Tom Clegg [Tue, 19 Sep 2023 03:56:57 +0000 (23:56 -0400)]
20300: Update bundle to rails 6.1.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update test to new Rails API.
Tom Clegg [Tue, 19 Sep 2023 03:55:46 +0000 (23:55 -0400)]
20300: Update test to new Rails API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Mark belongs_to relations as optional.
Tom Clegg [Mon, 18 Sep 2023 20:06:29 +0000 (16:06 -0400)]
20300: Mark belongs_to relations as optional.

Temporary migration switch is no longer effective.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Rails 6.0 app:update
Tom Clegg [Mon, 25 Sep 2023 18:36:56 +0000 (14:36 -0400)]
20300: Rails 6.0 app:update

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Add rails-generated files to .licenseignore.
Tom Clegg [Thu, 14 Sep 2023 13:37:26 +0000 (09:37 -0400)]
20300: Add rails-generated files to .licenseignore.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix key order sensitivity in test, part 2.
Tom Clegg [Thu, 7 Sep 2023 18:01:24 +0000 (14:01 -0400)]
20300: Fix key order sensitivity in test, part 2.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix key order sensitivity in test, part 1.
Tom Clegg [Thu, 7 Sep 2023 17:45:13 +0000 (13:45 -0400)]
20300: Fix key order sensitivity in test, part 1.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update expected content-type in test.
Tom Clegg [Thu, 7 Sep 2023 14:13:53 +0000 (10:13 -0400)]
20300: Update expected content-type in test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix where(nil, ...) case.
Tom Clegg [Thu, 7 Sep 2023 13:39:34 +0000 (09:39 -0400)]
20300: Fix where(nil, ...) case.

Rails 5 accepted where(nil, ...) as a no-op, but in Rails 6 that's an
error.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix YAML usage.
Tom Clegg [Thu, 7 Sep 2023 13:37:56 +0000 (09:37 -0400)]
20300: Fix YAML usage.

YAML.safe_load_file does not exist until Ruby 3.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Remove obsolete uses of set_attribute_was.
Tom Clegg [Thu, 7 Sep 2023 17:53:41 +0000 (13:53 -0400)]
20300: Remove obsolete uses of set_attribute_was.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Change deprecated update_attributes to update.
Tom Clegg [Wed, 6 Sep 2023 21:21:50 +0000 (17:21 -0400)]
20300: Change deprecated update_attributes to update.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Call safe_load explicitly instead of using safe_yaml gem.
Tom Clegg [Wed, 6 Sep 2023 21:20:11 +0000 (17:20 -0400)]
20300: Call safe_load explicitly instead of using safe_yaml gem.

safe_yaml breaks new i18n.

ArgumentError: wrong number of arguments (given 2, expected 1)
/home/tom/.gem/ruby/2.7.0/gems/safe_yaml-1.0.5/lib/safe_yaml.rb:37:in `unsafe_load_file'
/home/tom/.gem/ruby/2.7.0/gems/i18n-1.14.1/lib/i18n/backend/base.rb:254:in `load_yml'
...

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Remove extra Time.parse(), which Rails 6 does implicitly.
Tom Clegg [Tue, 5 Sep 2023 13:49:33 +0000 (09:49 -0400)]
20300: Remove extra Time.parse(), which Rails 6 does implicitly.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Remove obsolete i18n version pin.
Tom Clegg [Tue, 5 Sep 2023 13:40:44 +0000 (09:40 -0400)]
20300: Remove obsolete i18n version pin.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update gemfiles to rails 6.
Tom Clegg [Mon, 18 Sep 2023 18:36:54 +0000 (14:36 -0400)]
20300: Update gemfiles to rails 6.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '20862-google-api-client'
Tom Clegg [Mon, 25 Sep 2023 18:17:41 +0000 (14:17 -0400)]
Merge branch '20862-google-api-client'

fixes #20862

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20862: Update docs on google-api-client fork. 20862-google-api-client
Tom Clegg [Mon, 25 Sep 2023 18:14:37 +0000 (14:14 -0400)]
20862: Update docs on google-api-client fork.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20862: Emit notice about skipping sdk/ruby-google-api-client tests.
Tom Clegg [Mon, 25 Sep 2023 15:56:48 +0000 (11:56 -0400)]
20862: Emit notice about skipping sdk/ruby-google-api-client tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20862: Merge branch 'main' into 20862-google-api-client
Tom Clegg [Mon, 25 Sep 2023 15:46:36 +0000 (11:46 -0400)]
20862: Merge branch 'main' into 20862-google-api-client

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agoFix 2.7.0 date in upgrading notes, refs #20769 2.7.0
Peter Amstutz [Thu, 21 Sep 2023 13:14:54 +0000 (09:14 -0400)]
Fix 2.7.0 date in upgrading notes, refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoNeed to have nvidia installed so singularity detects it
Peter Amstutz [Wed, 20 Sep 2023 21:15:20 +0000 (17:15 -0400)]
Need to have nvidia installed so singularity detects it

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoCheck out singularity from git to get submodules
Peter Amstutz [Wed, 20 Sep 2023 21:08:10 +0000 (17:08 -0400)]
Check out singularity from git to get submodules

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoAdd singularity build deps libglib2.0-dev and libseccomp-dev to packer
Peter Amstutz [Wed, 20 Sep 2023 20:56:15 +0000 (16:56 -0400)]
Add singularity build deps libglib2.0-dev and libseccomp-dev to packer

refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoSet 2.7.0 release date, refs #20769
Peter Amstutz [Wed, 20 Sep 2023 17:23:22 +0000 (13:23 -0400)]
Set 2.7.0 release date, refs #20769

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoFix cwltest version pin, refs #20973
Peter Amstutz [Tue, 19 Sep 2023 21:24:47 +0000 (17:24 -0400)]
Fix cwltest version pin, refs #20973

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoMerge branch '20973-cwltest' refs #20973
Peter Amstutz [Mon, 18 Sep 2023 15:29:27 +0000 (11:29 -0400)]
Merge branch '20973-cwltest' refs #20973

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoMerge branch '20497-updating-wgs-tutorial'
Brett Smith [Mon, 18 Sep 2023 14:45:02 +0000 (10:45 -0400)]
Merge branch '20497-updating-wgs-tutorial'

Closes #20497.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Typo fixes 20497-updating-wgs-tutorial
Brett Smith [Mon, 18 Sep 2023 14:44:04 +0000 (10:44 -0400)]
20497: Typo fixes

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Give brief instructions for reviewing subprocess output
Brett Smith [Mon, 18 Sep 2023 14:35:42 +0000 (10:35 -0400)]
20497: Give brief instructions for reviewing subprocess output

This was previously discussed in the same paragraph as the main workflow
download collection. Moving it here means we don't jump back and forth
as much between the main workflow process and a subprocess.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Clarify collection view/download
Brett Smith [Mon, 18 Sep 2023 13:37:52 +0000 (09:37 -0400)]
20497: Clarify collection view/download

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Clean up section 5 opening paragraph
Brett Smith [Mon, 18 Sep 2023 13:34:55 +0000 (09:34 -0400)]
20497: Clean up section 5 opening paragraph

There used to be multiple navigation options listed here. Now that
there's only one, the introduction needs to be updated to match.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months agoPin cwltest version that we package, refs #20973 20973-cwltest
Peter Amstutz [Mon, 18 Sep 2023 13:32:11 +0000 (09:32 -0400)]
Pin cwltest version that we package, refs #20973

The subsequent release of cwltest confirms that files exist on disk,
since our files are in Keep, all the tests fail.  We should add
[optional] Arvados support to cwltest so it can access Keep but for
the time being just package the last working version.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20497: Direct the reader to the tutorial project via Public Favorites
Brett Smith [Mon, 18 Sep 2023 13:31:14 +0000 (09:31 -0400)]
20497: Direct the reader to the tutorial project via Public Favorites

Unfortunately searching for the project raises a couple of issues:

* The search results return two copies of the project, one from pirca
  and one from jutro. If the reader picks the jutro one, they'll be
  prompted to log in again, losing their progress and kicking them off the
  happy path.

* The search results also return the finished demo workflow process we
  publish for people, "(start here) Example WGS processing workflow". This
  is attractive to people because it says "(start here)", has a bright
  green "Completed" badge next to it, and the difference between a process
  and a project may not be clear to people who are just getting started
  with Arvados.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Add missing paragraph break
Brett Smith [Mon, 18 Sep 2023 13:29:24 +0000 (09:29 -0400)]
20497: Add missing paragraph break

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Make button text consistent with Workbench 2 UI
Brett Smith [Mon, 18 Sep 2023 13:28:20 +0000 (09:28 -0400)]
20497: Make button text consistent with Workbench 2 UI

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months agoMerge branch '20955-log-update-doc' refs #20955
Peter Amstutz [Mon, 18 Sep 2023 13:21:13 +0000 (09:21 -0400)]
Merge branch '20955-log-update-doc' refs #20955

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20955: Typo fixes throughout 20955-log-update-doc
Brett Smith [Mon, 18 Sep 2023 02:47:57 +0000 (22:47 -0400)]
20955: Typo fixes throughout

* "superceded"→"superseded"
* "via[d] the" repetition
* "database" echoed twice in one sentence
* Link hardcoded to doc.arvados.org→site.baseurl

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20955: Update documentation about the new and legacy container logging systems
Peter Amstutz [Fri, 15 Sep 2023 20:47:12 +0000 (16:47 -0400)]
20955: Update documentation about the new and legacy container logging systems

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20955: Reorder upgrade notes in rough order of disruptiveness
Peter Amstutz [Fri, 15 Sep 2023 17:47:51 +0000 (13:47 -0400)]
20955: Reorder upgrade notes in rough order of disruptiveness

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoAdd note about api_client_authorization deprecated fields refs #20951
Peter Amstutz [Fri, 15 Sep 2023 15:11:07 +0000 (11:11 -0400)]
Add note about api_client_authorization deprecated fields refs #20951

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoMerge branch '20926-installer-pg-client-version'. Closes #20926
Lucas Di Pentima [Thu, 14 Sep 2023 21:04:06 +0000 (18:04 -0300)]
Merge branch '20926-installer-pg-client-version'. Closes #20926

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20926: Makes regex for postgres.client state more strict. 20926-installer-pg-client-version
Lucas Di Pentima [Thu, 14 Sep 2023 21:02:44 +0000 (18:02 -0300)]
20926: Makes regex for postgres.client state more strict.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months agoMerge branch '20932-wb2-docs'
Brett Smith [Thu, 14 Sep 2023 16:00:42 +0000 (12:00 -0400)]
Merge branch '20932-wb2-docs'

Closes #20932.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20926: Sets default PG version when when using single host deployment.
Lucas Di Pentima [Thu, 14 Sep 2023 14:46:30 +0000 (11:46 -0300)]
20926: Sets default PG version when when using single host deployment.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20926: Sets PostgreSQL v15 the default version.
Lucas Di Pentima [Thu, 14 Sep 2023 14:23:00 +0000 (11:23 -0300)]
20926: Sets PostgreSQL v15 the default version.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20926: Requires manually setting PG version when not using the 'database' role.
Lucas Di Pentima [Wed, 13 Sep 2023 22:27:13 +0000 (19:27 -0300)]
20926: Requires manually setting PG version when not using the 'database' role.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months agoMerge branch '20930-websocket'
Tom Clegg [Wed, 13 Sep 2023 19:53:59 +0000 (15:53 -0400)]
Merge branch '20930-websocket'

fixes #20930
fixes #20507

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agoMerge branch '20850-wb1-deprecated' refs #20850
Peter Amstutz [Wed, 13 Sep 2023 19:28:12 +0000 (15:28 -0400)]
Merge branch '20850-wb1-deprecated' refs #20850

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20850: Fix capitalization and indentation
Peter Amstutz [Wed, 13 Sep 2023 19:26:28 +0000 (15:26 -0400)]
20850: Fix capitalization and indentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20932: Update un/trash instructions for Workbench 2 20932-wb2-docs
Brett Smith [Wed, 13 Sep 2023 18:29:43 +0000 (14:29 -0400)]
20932: Update un/trash instructions for Workbench 2

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20932/20850/20890: Remove switch instructions from Workbench migration guide
Brett Smith [Wed, 13 Sep 2023 18:16:19 +0000 (14:16 -0400)]
20932/20850/20890: Remove switch instructions from Workbench migration guide

The switch feature has been removed from Workbench 2, and a deprecation
notice in Workbench 1 now prominently leads you to switch. See #20890
and #20850, respectively.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20497: Updating documentation
Alex Coleman [Wed, 13 Sep 2023 04:24:09 +0000 (22:24 -0600)]
20497: Updating documentation

Updating screenshots, adding additional screenshot, rewording several sections, and adding more relevant
information for Workbench2.

Arvados-DCO-1.1-Signed-off-by: Alex Coleman <alex.coleman@curii.com>

14 months ago20926: Allows the database version to be configurable from local.params.
Lucas Di Pentima [Tue, 12 Sep 2023 22:35:36 +0000 (19:35 -0300)]
20926: Allows the database version to be configurable from local.params.

Also, installs postgresql-client on the controller nodes from the salt
formula, so that its version matches the configured value.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20840: Typo fixes.
Brett Smith [Tue, 12 Sep 2023 21:53:32 +0000 (17:53 -0400)]
20840: Typo fixes.

Refs #20840.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months agoFix flaky dispatchcloud test.
Tom Clegg [Tue, 12 Sep 2023 17:52:24 +0000 (13:52 -0400)]
Fix flaky dispatchcloud test.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agoMerge branch '20840-api-deprecate-notice' refs #20840
Peter Amstutz [Tue, 12 Sep 2023 15:46:54 +0000 (11:46 -0400)]
Merge branch '20840-api-deprecate-notice' refs #20840

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20930: Fix deadlock in notify/listen event loop. 20930-websocket
Tom Clegg [Tue, 12 Sep 2023 13:49:35 +0000 (09:49 -0400)]
20930: Fix deadlock in notify/listen event loop.

See TestManyEventsAndSubscribers comment in previous commit.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20930: Test many clients connecting and disonnecting.
Tom Clegg [Sun, 10 Sep 2023 02:01:22 +0000 (22:01 -0400)]
20930: Test many clients connecting and disonnecting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20930: Concurrency optimization.
Tom Clegg [Sun, 10 Sep 2023 02:02:29 +0000 (22:02 -0400)]
20930: Concurrency optimization.

In handler, create the eventSink later, and call Stop() sooner, to
avoid needlessly blocking other sinks during other setup/teardown.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agoMerge branch '20888-encrypted-cert-key-doc'. Closes #20888
Lucas Di Pentima [Fri, 8 Sep 2023 21:00:19 +0000 (18:00 -0300)]
Merge branch '20888-encrypted-cert-key-doc'. Closes #20888

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20888: Applies suggested improvements. 20888-encrypted-cert-key-doc
Lucas Di Pentima [Fri, 8 Sep 2023 20:59:03 +0000 (17:59 -0300)]
20888: Applies suggested improvements.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months ago20930: Fix passing arvados.Client (with a sync.Mutex) by value.
Tom Clegg [Fri, 8 Sep 2023 20:06:57 +0000 (16:06 -0400)]
20930: Fix passing arvados.Client (with a sync.Mutex) by value.

Copying could occur while the original arvados.Client was being used
to fetch the discovery doc and had its Mutex locked.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20930: Fix unhelpful test failure output.
Tom Clegg [Fri, 8 Sep 2023 20:31:39 +0000 (16:31 -0400)]
20930: Fix unhelpful test failure output.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20888: Expands the encrypted cert key feature's documentation.
Lucas Di Pentima [Fri, 8 Sep 2023 19:59:10 +0000 (16:59 -0300)]
20888: Expands the encrypted cert key feature's documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months agoAvoid Python3.7 incompatibility introduced in typing_extensions 4.8.
Tom Clegg [Fri, 8 Sep 2023 13:39:38 +0000 (09:39 -0400)]
Avoid Python3.7 incompatibility introduced in typing_extensions 4.8.

refs #20905

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agoMerge branch '20889-installer-fixes'. Closes #20889
Lucas Di Pentima [Thu, 7 Sep 2023 13:07:18 +0000 (10:07 -0300)]
Merge branch '20889-installer-fixes'. Closes #20889

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

14 months agoMerge branch '20750-sharing-token-scopes'
Brett Smith [Tue, 5 Sep 2023 20:50:09 +0000 (16:50 -0400)]
Merge branch '20750-sharing-token-scopes'

Closes #20750.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20750/20927: Add TODO about network error handling
Brett Smith [Tue, 5 Sep 2023 20:46:54 +0000 (16:46 -0400)]
20750/20927: Add TODO about network error handling

The commit message for 9717f88d29310067fa70e19fb9afb3679c036bc4 says:

> This may also provide better behavior in cases of network hiccups or
> other remote server turbulence.

This was written with the expectation that those problems would raise
`HTTPClient::BadResponseError`. That was mistaken. Those problems
actually raise lower-level socket exceptions instead.

We now have a ticket to improve the error handling here. It's out of
scope for #20750, since the error handling is no worse than it was
before the branch.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months ago20750: Fix comment typo
Brett Smith [Tue, 5 Sep 2023 20:46:48 +0000 (16:46 -0400)]
20750: Fix comment typo

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months agoMerge branch '20612-diag-ctr-api-access'
Tom Clegg [Tue, 5 Sep 2023 19:46:17 +0000 (15:46 -0400)]
Merge branch '20612-diag-ctr-api-access'

closes #20612

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20612: Fix up punctuation/capitalization in docs.
Tom Clegg [Tue, 5 Sep 2023 19:39:33 +0000 (15:39 -0400)]
20612: Fix up punctuation/capitalization in docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20840: Fix broken url 20840-api-deprecate-notice
Peter Amstutz [Tue, 5 Sep 2023 18:06:49 +0000 (14:06 -0400)]
20840: Fix broken url

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months agoMerge branch '20919-fix-proxy-url'
Tom Clegg [Mon, 4 Sep 2023 14:11:32 +0000 (10:11 -0400)]
Merge branch '20919-fix-proxy-url'

fixes #20919

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20850: Don't show wb2 deprecation notice to anonymous users 20850-wb1-deprecated
Peter Amstutz [Sun, 3 Sep 2023 17:52:40 +0000 (13:52 -0400)]
20850: Don't show wb2 deprecation notice to anonymous users

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20840: Add deprecations to upgrade notes
Peter Amstutz [Sun, 3 Sep 2023 17:36:49 +0000 (13:36 -0400)]
20840: Add deprecations to upgrade notes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20840: Add warning boxes to legacy APIs and rearrange API listing
Peter Amstutz [Sun, 3 Sep 2023 17:27:03 +0000 (13:27 -0400)]
20840: Add warning boxes to legacy APIs and rearrange API listing

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20850: Fix test selector
Peter Amstutz [Sun, 3 Sep 2023 16:44:34 +0000 (12:44 -0400)]
20850: Fix test selector

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20850: Add deprecation notice & wb2 redirect to every page
Peter Amstutz [Fri, 1 Sep 2023 21:26:28 +0000 (17:26 -0400)]
20850: Add deprecation notice & wb2 redirect to every page

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

14 months ago20612: Document diagnostics image building / container options. 20612-diag-ctr-api-access
Tom Clegg [Fri, 1 Sep 2023 18:22:51 +0000 (14:22 -0400)]
20612: Document diagnostics image building / container options.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20612: Set DEBIAN_FRONTEND=noninteractive for container build.
Tom Clegg [Fri, 1 Sep 2023 17:47:08 +0000 (13:47 -0400)]
20612: Set DEBIAN_FRONTEND=noninteractive for container build.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months agogithub-207: Fix outgoing Host header in proxy request. github-207
Tom Clegg [Wed, 30 Aug 2023 18:30:27 +0000 (14:30 -0400)]
github-207: Fix outgoing Host header in proxy request.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20915: Add missing import to _pycurlhelper
Brett Smith [Thu, 31 Aug 2023 13:27:03 +0000 (09:27 -0400)]
20915: Add missing import to _pycurlhelper

Closes #20915.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

14 months agoFix for cached files from arvados-controller
George Chlipala [Mon, 28 Aug 2023 21:57:06 +0000 (16:57 -0500)]
Fix for cached files from arvados-controller
Arvados-DCO-1.1-Signed-off-by: George Chlipala <gchlip2@uic.edu>

14 months ago20862: Revert i18n to earlier version for rails 5 compatibility.
Tom Clegg [Wed, 30 Aug 2023 13:05:02 +0000 (09:05 -0400)]
20862: Revert i18n to earlier version for rails 5 compatibility.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20862: Update gemfiles to use arvados-2.7.0.rc2.
Tom Clegg [Tue, 29 Aug 2023 19:12:59 +0000 (15:12 -0400)]
20862: Update gemfiles to use arvados-2.7.0.rc2.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

14 months ago20862: Update gemfiles to use arvados-2.7.0.rc1.
Tom Clegg [Tue, 29 Aug 2023 18:55:44 +0000 (14:55 -0400)]
20862: Update gemfiles to use arvados-2.7.0.rc1.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>