Lucas Di Pentima [Thu, 27 Jun 2019 14:54:21 +0000 (11:54 -0300)]
15209: Makes python components packages ask for current PySDK version.
This make arvados-cwl-runner, arvados-nodemanager, arvados-fuse and arvados-pam
to ask for the current arvados-python-client version when building packages.
Ask pip to look for packages on the PySDK sdist directory, so that current and
not yet uploaded versions can be asked as dependency.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 21 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Merge branch '15340-error-counters'
refs #15340
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 21 Jun 2019 20:12:56 +0000 (16:12 -0400)]
15340: Fix uncounted Destroy ops.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Wed, 19 Jun 2019 19:02:10 +0000 (15:02 -0400)]
Keep relative URL when switching between versions in our documentation.
refs #15138
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 19 Jun 2019 18:07:35 +0000 (14:07 -0400)]
Merge branch '15296-cwl-cancel-procs' closes #15296
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 19 Jun 2019 16:59:36 +0000 (12:59 -0400)]
Merge branch '15295-keep-ref-check' closes #15295
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 18 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Tidy up error checks in govendor test.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Jun 2019 20:03:37 +0000 (16:03 -0400)]
Check for up-to-date govendor as a test rather than a setup task.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 18 Jun 2019 17:28:40 +0000 (13:28 -0400)]
15296: Shutdown cancels processes unless running inside a container
Suppress errors in cancel request (such as a double-cancel race).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Tue, 18 Jun 2019 14:06:43 +0000 (10:06 -0400)]
Merge branch '15106-trgm-text-search'
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 21:08:50 +0000 (17:08 -0400)]
15295: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 19:56:16 +0000 (15:56 -0400)]
15295: Make "lock by different token" a PermissionDeniedError
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 19:08:53 +0000 (15:08 -0400)]
15295: Check that keep references are well formed
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 17 Jun 2019 18:58:17 +0000 (14:58 -0400)]
15106: Adds trigram support for "like" queries
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 18:28:53 +0000 (14:28 -0400)]
15295: Fix updating and checking lock_count when updating state
Previously lock_count was only updated on explicit lock or unlock
calls. Now updates to state will correctly update or check
lock_count.
Also tweak row locking for containers, remove redudant reload, also
make sure lock and unlock take a lock.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 15:20:15 +0000 (11:20 -0400)]
Merge branch '15087-wb-queued-containers' closes #15087
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 17 Jun 2019 15:19:57 +0000 (11:19 -0400)]
15106: Fixes arvbox to update an existing arvados user to superuser
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 14:53:56 +0000 (10:53 -0400)]
"arvbox run test" is --interactive if not run with any other arguments.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Jun 2019 13:53:25 +0000 (09:53 -0400)]
Merge branch '15340-error-counters'
closes #15340
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Jun 2019 13:37:05 +0000 (09:37 -0400)]
15087: Add links to the oldest/longest running container
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 20:52:36 +0000 (16:52 -0400)]
15340: Skip metrics update when running tests with no registry.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 19:27:30 +0000 (15:27 -0400)]
15340: Add metrics for cloud ops/errors and instance disappearances.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 18:40:17 +0000 (14:40 -0400)]
15087: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 18:28:49 +0000 (14:28 -0400)]
Merge branch '15000-config-api'
refs #15000
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Jun 2019 18:21:18 +0000 (14:21 -0400)]
15000: Recommend checking config publication errors during install.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 14 Jun 2019 17:59:24 +0000 (13:59 -0400)]
15106: Updates install and upgrade docs to include trgm prerequisites
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:35:51 +0000 (13:35 -0400)]
Merge branch '15368-python-deps' closes #15368
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:10:57 +0000 (13:10 -0400)]
15368: Don't require git to install arvados-python-client
It was catching CalledProcessError but if git is not installed the
error is actually OSError.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:07:17 +0000 (13:07 -0400)]
15368: Change doc references from "arv keep put/get" to "arv-put/get"
Since the "arv" frontend just adds overhead and requires installing
both ruby and python SDK instead of just the python sdk.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 17:06:08 +0000 (13:06 -0400)]
15368: Add note about debian dependencies for installing from pip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 15:09:13 +0000 (11:09 -0400)]
15295: Needs locks_count
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 14 Jun 2019 14:00:06 +0000 (10:00 -0400)]
15087: Make container status a separate panel
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 21:03:50 +0000 (17:03 -0400)]
15000: Update test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Jun 2019 20:39:27 +0000 (16:39 -0400)]
15087: Display pending/running containers and queue delay.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 19:46:01 +0000 (15:46 -0400)]
15000: Move exported config threshold to "needed by clients".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 19:45:38 +0000 (15:45 -0400)]
15000: Remove example image ID.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Jun 2019 19:14:46 +0000 (15:14 -0400)]
Merge branch '15332-fed-demo' refs #15332
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 21:25:17 +0000 (17:25 -0400)]
15332: Updated federation demo to do something a little more interesting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 13 Jun 2019 17:22:37 +0000 (13:22 -0400)]
Merge remote-tracking branch 'origin/master' into 15106-trgm-text-search
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 14:25:35 +0000 (10:25 -0400)]
Merge branch '15003-config-default-location'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Thu, 13 Jun 2019 14:22:47 +0000 (10:22 -0400)]
15106: Arvbox update to be able to run the trgm migration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 13 Jun 2019 13:32:02 +0000 (09:32 -0400)]
15000: Include bad value in error message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 12 Jun 2019 20:27:07 +0000 (16:27 -0400)]
15003: Load config from default location or -config arg, not stdin.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 12 Jun 2019 20:27:23 +0000 (16:27 -0400)]
15106: Adds exception handling to the trgm migration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Wed, 12 Jun 2019 18:02:08 +0000 (14:02 -0400)]
Merge branch '15138-version-our-documentation'
refs #15138
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 11 Jun 2019 17:42:40 +0000 (13:42 -0400)]
15138: Include logic to support building multiple versions of our documentation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 19:13:19 +0000 (16:13 -0300)]
Merge branch '14930-arvput-trash-at'
Closes #14930
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 11 Jun 2019 18:08:26 +0000 (14:08 -0400)]
Test setUp sets cwltool global names set used to ensure unique names
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 18:49:16 +0000 (15:49 -0300)]
Merge branch '15350-pysdk-cookbook-recipe'
Closes #15350
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 18:32:15 +0000 (15:32 -0300)]
15350: Simplifies recipe code.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Mon, 10 Jun 2019 14:41:22 +0000 (10:41 -0400)]
15138: Show the TM notice a little bit higher.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 16:55:34 +0000 (13:55 -0300)]
15350: Adds PySDK recipe to get a container request's state.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 11 Jun 2019 16:49:16 +0000 (13:49 -0300)]
15350: Fixes unnecessary api client instantiations on examples.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 23:15:23 +0000 (20:15 -0300)]
Merge branch 'master' into 14930-arvput-trash-at
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 22:44:47 +0000 (19:44 -0300)]
14930: Don't ignore DST settings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 10 Jun 2019 20:12:51 +0000 (16:12 -0400)]
Fix whitespace for gofmt 1.12.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 18:44:19 +0000 (14:44 -0400)]
15106: Adds test to verify the trgm index exists on the correct columns
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 18:10:36 +0000 (14:10 -0400)]
Merge branch '15028-fix-tests' refs #15028
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 18:09:56 +0000 (14:09 -0400)]
15028: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 17:46:52 +0000 (14:46 -0300)]
Merge branch '14946-ruby-2.5'
Refs #14946
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Jun 2019 17:45:54 +0000 (14:45 -0300)]
Merge branch 'master' into 14946-ruby-2.5
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 10 Jun 2019 15:37:12 +0000 (11:37 -0400)]
15028: Make sure tests use a version that supports CWL v1.1
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 15:21:29 +0000 (11:21 -0400)]
15106: Fix for trgm non-string operators
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 14:09:27 +0000 (10:09 -0400)]
15106: Adds trigram search to the api
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 10 Jun 2019 14:07:59 +0000 (10:07 -0400)]
Merge branch 'master' into 15106-trgm-text-search
refs #15106
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 19:27:05 +0000 (15:27 -0400)]
15028: Bump cwltool version for bugfix.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 18:12:38 +0000 (14:12 -0400)]
Make debian9 the default target for our package building scripts.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 21:08:23 +0000 (17:08 -0400)]
15000: Add Workbench configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 20:03:10 +0000 (16:03 -0400)]
15000: Accept byte size suffixes (KB, KiB, ...) for numeric configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 20:02:35 +0000 (16:02 -0400)]
15000: Accept negative durations in config, fix crashing error log.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 17:44:23 +0000 (13:44 -0400)]
15000: Ensure all config defaults are captured in config struct.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Jun 2019 14:54:26 +0000 (10:54 -0400)]
15000: Export safe parts of cluster config at /arvados/v1/config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 7 Jun 2019 16:27:22 +0000 (13:27 -0300)]
14930: Adds expiration notice in local time at the end of the run.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 7 Jun 2019 15:00:15 +0000 (12:00 -0300)]
14930: Assumes end-of-day datetime when --trash-at YYYY-MM-DD only.
Also:
* Refuses day-less dates on --trash-at
* Enhances readability on utc offset usage
* Adds tests
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 14:59:17 +0000 (10:59 -0400)]
arvbox certificates should be valid for 1 year not 30 days. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Jun 2019 14:41:23 +0000 (10:41 -0400)]
Merge branch '15311-api-no-colons' refs #15311
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 6 Jun 2019 15:36:34 +0000 (11:36 -0400)]
15311: Remove stringify-symbol behavior on database load
* Add test case demonstrating bug
* Remove convert_serialized_symbols_to_strings hook
* Add "rake symbols:check" to warn you if there are any serialized
columns that may have legacy symbols.
* Add "rake symbols:stringify" to warn you if there are any serialized
columns that may have legacy symbols.
* Add release notes for checking and stringifying symbols.
* Add table of contents to upgrading doc page.
* Add note about the has_symbol_keys_in_database_somehow fixture.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 01:26:27 +0000 (21:26 -0400)]
Make sdk/cli testable in interactive mode.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 7 Jun 2019 01:16:30 +0000 (21:16 -0400)]
Fix the build by disabling an old crunch-job (jobs api) test that now
depends on the presence of a post 1.3 version of the
python-arvados-python-client package being present.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 17:37:49 +0000 (14:37 -0300)]
Merge branch '15306-api-nonjson-params'
Closes #15306
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 16:55:19 +0000 (13:55 -0300)]
15306: Adds warning log message when parameter isn't boolean.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 16:48:47 +0000 (13:48 -0300)]
15306: Moves include_trash param declaration to the controller.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 6 Jun 2019 12:44:31 +0000 (09:44 -0300)]
15306: Adds include_trash param definition to container requests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 20:59:37 +0000 (16:59 -0400)]
Correct the release date for 1.4.0 in our documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 20:52:48 +0000 (17:52 -0300)]
15306: Fixes tests to POST form & json encoded params.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 19:59:29 +0000 (16:59 -0300)]
15306: Don't interpret include_trash="false" as include_trash=true.
The same goes to include_old_versions params at find_objects_for_index().
If any of those params aren't declared as boolean, assume false.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 17:53:28 +0000 (13:53 -0400)]
Merge branch '9945-crunch-job-python-path'
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 5 Jun 2019 16:49:27 +0000 (12:49 -0400)]
Crunch-job needs to call the python executable from our sdk package for
collating job output.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 13:08:10 +0000 (10:08 -0300)]
15306: Fixes issue on groups controller.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 5 Jun 2019 13:07:44 +0000 (10:07 -0300)]
15306: Adds similar test to groups, exposing the same issue as collections.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 23:34:21 +0000 (20:34 -0300)]
15306: Fixes the bug.
The problem was coming from 2 sides:
1) The collections#show action didn't have the required parameters definitions.
2) The load_required_parameters callback was being called after the object
lookup callback.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 23:32:13 +0000 (20:32 -0300)]
15306: Adds more test cases confirming the issue is encoding independent.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 19:36:19 +0000 (16:36 -0300)]
15306: Removes trailing slash on test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 19:30:01 +0000 (16:30 -0300)]
15306: Adds testing on collections#show that expose the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 18:23:47 +0000 (15:23 -0300)]
15306: Don't check for empty responses now that we use a filter.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 4 Jun 2019 18:08:34 +0000 (14:08 -0400)]
15306: Avoid paging in query string tests, too.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Jun 2019 18:02:02 +0000 (14:02 -0400)]
15306: Adjust tests: check ?include_trash= and avoid paging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 17:39:21 +0000 (14:39 -0300)]
15306: Adds integration tests with query string & form encoded params.
Specifically testing include_trash on collections.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 4 Jun 2019 17:20:24 +0000 (13:20 -0400)]
Merge branch '15028-cwl-v1.1' refs #15028
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 4 Jun 2019 13:37:49 +0000 (10:37 -0300)]
14930: Adds trash_at syncing when updating a collection with '--trash-after N'
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
projects / arvados.git / log