arvados.git
10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Fri, 14 Mar 2014 17:51:11 +0000 (13:51 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoMerge branch '2257-inequality-conditions'
Tom Clegg [Fri, 14 Mar 2014 17:42:20 +0000 (13:42 -0400)]
Merge branch '2257-inequality-conditions'

closes #2257

10 years agoAdd "filters" param to discovery document, add deprecation note to
Tom Clegg [Fri, 14 Mar 2014 17:38:23 +0000 (13:38 -0400)]
Add "filters" param to discovery document, add deprecation note to
"where" param description.

10 years agoapi: Improve compute_node_domain handling.
Brett Smith [Fri, 14 Mar 2014 17:34:29 +0000 (13:34 -0400)]
api: Improve compute_node_domain handling.

The default value was causing test failures on my machine because the
ERB evaluated to an empty string.  And we want to avoid this causing
any DNS lookups during tests.  Now we make the default false (in line
with our other compute_node_* settings), and suggest a change in
application.yml.example to demonstrate how it should be set.

I also fixed up the example about compute_node_nameservers while I was
at it.

This closes #2351.

10 years agoMake integer attributes searchable, add test cases.
Tom Clegg [Fri, 14 Mar 2014 14:31:03 +0000 (10:31 -0400)]
Make integer attributes searchable, add test cases.

10 years agoMerge branch 'master' into 2257-inequality-conditions
Tom Clegg [Fri, 14 Mar 2014 14:17:46 +0000 (10:17 -0400)]
Merge branch 'master' into 2257-inequality-conditions

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Thu, 13 Mar 2014 21:58:57 +0000 (17:58 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoSave logs to a temp file and commit to Keep via 'arv keep put'. Refs #2221.
Tim Pierce [Thu, 13 Mar 2014 21:57:57 +0000 (17:57 -0400)]
Save logs to a temp file and commit to Keep via 'arv keep put'. Refs #2221.

10 years agoFix order of steps in install doc, add git_repositories_dir
Tom Clegg [Thu, 13 Mar 2014 15:49:46 +0000 (11:49 -0400)]
Fix order of steps in install doc, add git_repositories_dir
instructions, remove troublesome default config.

10 years agodoc: Make Workbench install guide up-to-date.
Brett Smith [Thu, 13 Mar 2014 16:28:25 +0000 (12:28 -0400)]
doc: Make Workbench install guide up-to-date.

* Configure the application with `application.yml` instead of
  `config/environments/*.rb`.

* Consistently capitalize Workbench.

10 years agoFormatting tweaking to look good on github.
Peter Amstutz [Thu, 13 Mar 2014 13:50:21 +0000 (09:50 -0400)]
Formatting tweaking to look good on github.

10 years agoAdded more links to information in README.
Peter Amstutz [Thu, 13 Mar 2014 13:48:29 +0000 (09:48 -0400)]
Added more links to information in README.

10 years agoAdded a README with pointers to the documentation, COPYING with license information...
Peter Amstutz [Thu, 13 Mar 2014 13:31:02 +0000 (09:31 -0400)]
Added a README with pointers to the documentation, COPYING with license information, the relevant licenses, as well as a license section to the user guide.

10 years agoFix crash in render_error(not_an_exception), and use raise() rather
Tom Clegg [Thu, 13 Mar 2014 04:17:06 +0000 (00:17 -0400)]
Fix crash in render_error(not_an_exception), and use raise() rather
than calling render_error() directly from ApplicationController#save
and #update

10 years agoAdd sqlite3 to Gemfile so database.yml.sample works unmodified
Tom Clegg [Thu, 13 Mar 2014 04:04:34 +0000 (00:04 -0400)]
Add sqlite3 to Gemfile so database.yml.sample works unmodified

10 years agoFix configured uuid_prefix and force_ssl getting overwritten by application.rb
Tom Clegg [Wed, 12 Mar 2014 22:11:15 +0000 (18:11 -0400)]
Fix configured uuid_prefix and force_ssl getting overwritten by application.rb

10 years agoRemove some stumbling blocks in default/example configs
Tom Clegg [Wed, 12 Mar 2014 22:10:32 +0000 (18:10 -0400)]
Remove some stumbling blocks in default/example configs

10 years agoFixed typo in secret_token.rb
Peter Amstutz [Thu, 13 Mar 2014 02:21:49 +0000 (22:21 -0400)]
Fixed typo in secret_token.rb

10 years agoUpdated workbench documentation.
Peter Amstutz [Thu, 13 Mar 2014 02:19:20 +0000 (22:19 -0400)]
Updated workbench documentation.

10 years agoWorking on improving install documentation.
Peter Amstutz [Thu, 13 Mar 2014 01:53:57 +0000 (21:53 -0400)]
Working on improving install documentation.

10 years agoAdded section on setting up SSO server
Peter Amstutz [Thu, 13 Mar 2014 01:08:33 +0000 (21:08 -0400)]
Added section on setting up SSO server

10 years agoFix RVM install bug (rvm-installer --ruby doesn't work in Docker?) refs #2221
Tim Pierce [Wed, 12 Mar 2014 22:17:42 +0000 (18:17 -0400)]
Fix RVM install bug (rvm-installer --ruby doesn't work in Docker?) refs #2221

10 years agoAdds scopes: ["all"] when creating a new api client authorization, because database...
Peter Amstutz [Wed, 12 Mar 2014 19:29:18 +0000 (15:29 -0400)]
Adds scopes: ["all"] when creating a new api client authorization, because database schema does not permit have a null scopes column.

10 years agoReplaces postgres-specific 'now()' with standard SQL CURRENT_TIMESTAMP
Peter Amstutz [Wed, 12 Mar 2014 19:26:29 +0000 (15:26 -0400)]
Replaces postgres-specific 'now()' with standard SQL CURRENT_TIMESTAMP
Render checks that opts which are passed in are valid before trying to use it.

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Wed, 12 Mar 2014 18:43:38 +0000 (14:43 -0400)]
Merge branch 'master' into 2221-complete-docker

Conflicts:
doc/user/topics/tutorial-job-debug.html.textile.liquid
doc/user/tutorials/tutorial-keep.html.textile.liquid

10 years agoURL change for the auth server.
Ward Vandewege [Wed, 12 Mar 2014 16:15:04 +0000 (12:15 -0400)]
URL change for the auth server.

10 years agoFix links to docs in workbench
Ward Vandewege [Tue, 11 Mar 2014 22:22:12 +0000 (18:22 -0400)]
Fix links to docs in workbench

10 years agoinstall_sdk.sh: install the arvados-cli gem and all prerequisites. (refs #2221)
Tim Pierce [Tue, 11 Mar 2014 21:36:13 +0000 (17:36 -0400)]
install_sdk.sh: install the arvados-cli gem and all prerequisites. (refs #2221)

10 years agoUpdate Gemfile to use latest arv-run-pipeline
Tom Clegg [Tue, 11 Mar 2014 20:50:05 +0000 (16:50 -0400)]
Update Gemfile to use latest arv-run-pipeline

10 years agoBump versions, change optional=false to required=true, set dataclass
Tom Clegg [Tue, 11 Mar 2014 20:29:18 +0000 (16:29 -0400)]
Bump versions, change optional=false to required=true, set dataclass
for bwa-aln input.

10 years agoFix giving up on a pipeline prematurely when a component is waiting
Tom Clegg [Tue, 11 Mar 2014 20:27:55 +0000 (16:27 -0400)]
Fix giving up on a pipeline prematurely when a component is waiting
for an output produced by a component later in the components.each()
loop.

10 years agoMerge branch 'master' of git.clinicalfuture.com:arvados
Peter Amstutz [Tue, 11 Mar 2014 20:27:22 +0000 (16:27 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

10 years agoMerge branch '2107-update-documentation'
Peter Amstutz [Tue, 11 Mar 2014 20:26:59 +0000 (16:26 -0400)]
Merge branch '2107-update-documentation'

10 years agodoc: Note warning for get one collection block.
Brett Smith [Tue, 11 Mar 2014 20:12:11 +0000 (16:12 -0400)]
doc: Note warning for get one collection block.

Added per discussion with Tom.  We're also interested in fixing the
warning, but in the meantime, this is worth documenting.

10 years agodoc: Improve "How Keep Works" flow.
Brett Smith [Tue, 11 Mar 2014 20:08:19 +0000 (16:08 -0400)]
doc: Improve "How Keep Works" flow.

This addresses the fact that this page was broken off from the
original Keep tutorial page.

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Tue, 11 Mar 2014 19:54:22 +0000 (15:54 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoMerge branch 'master' of git.clinicalfuture.com:arvados
Tim Pierce [Tue, 11 Mar 2014 19:53:33 +0000 (15:53 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados

10 years agoSmall documentation fixes for installing. refs #2221
Tim Pierce [Tue, 11 Mar 2014 19:52:53 +0000 (15:52 -0400)]
Small documentation fixes for installing. refs #2221

10 years agodoc: Make CLI pipeline run up-to-date.
Brett Smith [Tue, 11 Mar 2014 19:28:05 +0000 (15:28 -0400)]
doc: Make CLI pipeline run up-to-date.

This refreshes Keep hashes and the output format of `arv pipeline run`.

10 years agodoc: Improve flow of CLI pipeline run.
Brett Smith [Tue, 11 Mar 2014 19:26:52 +0000 (15:26 -0400)]
doc: Improve flow of CLI pipeline run.

The previous version assumed that we already had a static pipeline
template.  That's no longer true under the current flow, so instruct
the user to make one at the start of the tutorial.

10 years agoMerge branch 'master' of git.clinicalfuture.com:arvados
Peter Amstutz [Tue, 11 Mar 2014 19:21:41 +0000 (15:21 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

10 years agoBugfixes to provenance graph:
Peter Amstutz [Tue, 11 Mar 2014 19:21:28 +0000 (15:21 -0400)]
Bugfixes to provenance graph:
* Fixed url generation to use correct protocol (http/https)
* Fixed generic node description
* Fixed direction of provenance graph

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Tue, 11 Mar 2014 19:10:43 +0000 (15:10 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoReport error message and propagate exit code if subprocess.call() fails.
Tom Clegg [Tue, 11 Mar 2014 18:58:44 +0000 (14:58 -0400)]
Report error message and propagate exit code if subprocess.call() fails.

10 years agoUpdate instructions to use build.sh. (refs #2221)
Tim Pierce [Tue, 11 Mar 2014 18:48:49 +0000 (14:48 -0400)]
Update instructions to use build.sh. (refs #2221)

10 years agodoc: Consistent style in outside program tutorial.
Brett Smith [Tue, 11 Mar 2014 18:11:22 +0000 (14:11 -0400)]
doc: Consistent style in outside program tutorial.

10 years agodoc: Consistent style in new pipeline tutorial.
Brett Smith [Tue, 11 Mar 2014 18:04:39 +0000 (14:04 -0400)]
doc: Consistent style in new pipeline tutorial.

10 years agodoc: Small bugfixes for first pipeline template.
Brett Smith [Tue, 11 Mar 2014 17:50:08 +0000 (13:50 -0400)]
doc: Small bugfixes for first pipeline template.

10 years agoRan linkchecker and fixed links.
Peter Amstutz [Tue, 11 Mar 2014 18:34:58 +0000 (14:34 -0400)]
Ran linkchecker and fixed links.

10 years agoAdded liquid template to link to next and previous pages.
Peter Amstutz [Tue, 11 Mar 2014 18:18:12 +0000 (14:18 -0400)]
Added liquid template to link to next and previous pages.

10 years agoFix user_agreements/sign* routing again.
Tom Clegg [Tue, 11 Mar 2014 18:05:59 +0000 (14:05 -0400)]
Fix user_agreements/sign* routing again.

10 years agoFix route method on user_agreements/sign.
Tom Clegg [Tue, 11 Mar 2014 17:56:15 +0000 (13:56 -0400)]
Fix route method on user_agreements/sign.

10 years agoFix bugs introduced from merge with master. (refs #2221)
Tim Pierce [Tue, 11 Mar 2014 17:54:55 +0000 (13:54 -0400)]
Fix bugs introduced from merge with  (refs #2221)

* build.rb: be smarter about preparing SSH key and building config.yml
* build.sh: correct the check for ruby 1.9.3

* base: CURL and SSL libraries are now prerequisites
* apiserver: compute_node_domain must be set
* workbench: secret_token needs to be installed before rake precompile

10 years agodoc: Bold `you` in tutorial-parallel's job spec.
Brett Smith [Tue, 11 Mar 2014 16:33:55 +0000 (12:33 -0400)]
doc: Bold `you` in tutorial-parallel's job spec.

10 years agodoc: Fix hello-world-fixed.py name in job-debug.
Brett Smith [Tue, 11 Mar 2014 15:43:40 +0000 (11:43 -0400)]
doc: Fix hello-world-fixed.py name in job-debug.

10 years agodoc: Consistent style for `you` in job-debug.
Brett Smith [Tue, 11 Mar 2014 15:31:09 +0000 (11:31 -0400)]
doc: Consistent style for `you` in job-debug.

10 years agodoc: Update job1's expected output.
Brett Smith [Tue, 11 Mar 2014 15:24:07 +0000 (11:24 -0400)]
doc: Update job1's expected output.

Pete changed this script so that the output filename has a leading
`./`.  This commit updates the tutorial to match.

10 years agodoc: Highlight `you` in the first script job spec.
Brett Smith [Tue, 11 Mar 2014 16:05:50 +0000 (12:05 -0400)]
doc: Highlight `you` in the first script job spec.

10 years agodoc: Suggest setting User in .ssh/config.
Brett Smith [Tue, 11 Mar 2014 15:10:44 +0000 (11:10 -0400)]
doc: Suggest setting User in .ssh/config.

10 years agoUpdate comment to refer to correct default-config file.
Tom Clegg [Tue, 11 Mar 2014 17:28:49 +0000 (13:28 -0400)]
Update comment to refer to correct default-config file.

10 years agoFix left nav order in Install section.
Tom Clegg [Tue, 11 Mar 2014 17:03:45 +0000 (13:03 -0400)]
Fix left nav order in Install section.

10 years agoAdd api server package dependencies and update config instructions.
Tom Clegg [Tue, 11 Mar 2014 17:02:48 +0000 (13:02 -0400)]
Add api server package dependencies and update config instructions.

10 years agoRemoved h1. titles from pages because it is now part of the page template.
Peter Amstutz [Tue, 11 Mar 2014 16:36:11 +0000 (12:36 -0400)]
Removed h1. titles from pages because it is now part of the page template.

10 years agoMore documentation updates and reorganization.
Peter Amstutz [Tue, 11 Mar 2014 16:22:57 +0000 (12:22 -0400)]
More documentation updates and reorganization.

10 years agoRemove PYTHONPATH hack.
Tom Clegg [Tue, 11 Mar 2014 16:03:51 +0000 (12:03 -0400)]
Remove PYTHONPATH hack.

10 years agoFinished first draft of tutorial running pipeline from workbench.
Peter Amstutz [Tue, 11 Mar 2014 15:38:58 +0000 (11:38 -0400)]
Finished first draft of tutorial running pipeline from workbench.

10 years agoReorganizing documentation work in progress, checkpointing so that Brett can start...
Peter Amstutz [Tue, 11 Mar 2014 14:52:19 +0000 (10:52 -0400)]
Reorganizing documentation work in progress, checkpointing so that Brett can start looking through it.

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Tue, 11 Mar 2014 14:13:25 +0000 (10:13 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoForce ruby1.9.3 install. (refs #2221)
Tim Pierce [Tue, 11 Mar 2014 14:12:55 +0000 (10:12 -0400)]
Force ruby1.9.3 install. (refs #2221)

10 years agoAdd instructions for installing with new versions of pip.
Tom Clegg [Tue, 11 Mar 2014 04:29:40 +0000 (00:29 -0400)]
Add instructions for installing with new versions of pip.

10 years agoFix namespace bug in write_directory_tree(max_manifest_depth=0).
Tom Clegg [Tue, 11 Mar 2014 04:07:40 +0000 (00:07 -0400)]
Fix namespace bug in write_directory_tree(max_manifest_depth=0).

10 years agoAdd python-pip to Python SDK install dependencies
Tom Clegg [Tue, 11 Mar 2014 01:02:35 +0000 (21:02 -0400)]
Add python-pip to Python SDK install dependencies

10 years agoAdd arvados-cli dependency to Gemfile.
Tom Clegg [Mon, 10 Mar 2014 23:54:10 +0000 (19:54 -0400)]
Add arvados-cli dependency to Gemfile.

10 years agoFix bugs for Ubunto 12.04 and 13.10. (refs #2221)
Tim Pierce [Mon, 10 Mar 2014 21:14:44 +0000 (17:14 -0400)]
Fix bugs for Ubunto 12.04 and 13.10. (refs #2221)

10 years agoMerge branch '2042-new-collection-from-selected-files'
Peter Amstutz [Mon, 10 Mar 2014 21:08:46 +0000 (17:08 -0400)]
Merge branch '2042-new-collection-from-selected-files'

10 years agoMerge branch 'master' of git.clinicalfuture.com:arvados
Peter Amstutz [Mon, 10 Mar 2014 21:04:48 +0000 (17:04 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

10 years agoRemoved out of order link to next tutorial.
Peter Amstutz [Mon, 10 Mar 2014 21:00:49 +0000 (17:00 -0400)]
Removed out of order link to next tutorial.

10 years agoUpdating and reorganizing tutorials based on new features and feedback.
Peter Amstutz [Mon, 10 Mar 2014 21:00:20 +0000 (17:00 -0400)]
Updating and reorganizing tutorials based on new features and feedback.

10 years agoRename preload_all_models to zz_* so it runs after load_config.
Tom Clegg [Mon, 10 Mar 2014 20:49:24 +0000 (16:49 -0400)]
Rename preload_all_models to zz_* so it runs after load_config.

10 years agoDefault to using a random secret_token in test mode.
Tom Clegg [Mon, 10 Mar 2014 20:38:00 +0000 (16:38 -0400)]
Default to using a random secret_token in test mode.

10 years agoAdd missing config variable to test.rb.example. Thanks, #2076!
Tom Clegg [Mon, 10 Mar 2014 20:34:14 +0000 (16:34 -0400)]
Add missing config variable to test.rb.example. Thanks, #2076!

10 years agoRename load_config to zz_load_config so initializers/secret_token.rb
Tom Clegg [Mon, 10 Mar 2014 20:26:57 +0000 (16:26 -0400)]
Rename load_config to zz_load_config so initializers/secret_token.rb
gets loaded before we check for missing config settings.

refs #2076

10 years agoMerge branch '2189-log-in-as-user'
Tom Clegg [Mon, 10 Mar 2014 20:09:16 +0000 (16:09 -0400)]
Merge branch '2189-log-in-as-user'

closes #2189

10 years agoMerge branch '2076-check-config-at-boot'
Tom Clegg [Mon, 10 Mar 2014 20:09:04 +0000 (16:09 -0400)]
Merge branch '2076-check-config-at-boot'

closes #2076

10 years agoMerge branch 'master' into 2189-log-in-as-user
Tom Clegg [Mon, 10 Mar 2014 20:08:29 +0000 (16:08 -0400)]
Merge branch 'master' into 2189-log-in-as-user

10 years agoRename config[.defaults].yml to application[.default].yml
Tom Clegg [Mon, 10 Mar 2014 20:05:31 +0000 (16:05 -0400)]
Rename config[.defaults].yml to application[.default].yml

10 years agoMerge branch 'master' into 2076-check-config-at-boot
Tom Clegg [Mon, 10 Mar 2014 19:58:49 +0000 (15:58 -0400)]
Merge branch 'master' into 2076-check-config-at-boot

10 years agoMake build.sh executable. (refs #2221)
Tim Pierce [Mon, 10 Mar 2014 17:45:59 +0000 (13:45 -0400)]
Make build.sh executable. (refs #2221)

10 years ago* Added README with information about building/viewing the docs.
Peter Amstutz [Mon, 10 Mar 2014 17:40:29 +0000 (13:40 -0400)]
* Added README with information about building/viewing the docs.
* Added arvados_workbench_host
* Can now specify baseurl, arvados_workbench_host, and arvados_api_host on the command line to override _config.yml
* Added liquid tag {% code 'file' as language %} for syntax highlighting via coderay

10 years agoFix incorrect API endpoints in api/schema/
Tom Clegg [Mon, 10 Mar 2014 17:21:55 +0000 (13:21 -0400)]
Fix incorrect API endpoints in api/schema/

10 years agoAdd build.sh wrapper for build.rb, to make sure Ruby is installed. (Refs #2221)
Tim Pierce [Mon, 10 Mar 2014 15:08:19 +0000 (11:08 -0400)]
Add build.sh wrapper for build.rb, to make sure Ruby is installed. (Refs #2221)

10 years agoMerge branch 'master' into 2221-complete-docker
Tim Pierce [Mon, 10 Mar 2014 14:49:41 +0000 (10:49 -0400)]
Merge branch 'master' into 2221-complete-docker

10 years agoAdvertise filters param in discovery doc.
Tom Clegg [Sun, 9 Mar 2014 07:36:36 +0000 (03:36 -0400)]
Advertise filters param in discovery doc.

10 years agoMove where=[] to filters=[]
Tom Clegg [Sun, 9 Mar 2014 07:33:50 +0000 (03:33 -0400)]
Move where=[] to filters=[]

10 years agoinstall.rb: generate config.yml file on demand if necessary. Refs #2221.
Tim Pierce [Fri, 7 Mar 2014 23:57:30 +0000 (18:57 -0500)]
install.rb: generate config.yml file on demand if necessary. Refs #2221.

10 years agoSupport where=[[attr,operator,operand],...] parameter
Tom Clegg [Fri, 7 Mar 2014 23:13:15 +0000 (18:13 -0500)]
Support where=[[attr,operator,operand],...] parameter

10 years agoMerge branch '2049-run-job-from-workbench-correct' of git.clinicalfuture.com:arvados...
Peter Amstutz [Fri, 7 Mar 2014 22:05:59 +0000 (17:05 -0500)]
Merge branch '2049-run-job-from-workbench-correct' of git.clinicalfuture.com:arvados into 2049-run-job-from-workbench-correct

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

10 years agorender_editable_subattribute() uses link_to_if_arvados_object() if the field is not...
Peter Amstutz [Fri, 7 Mar 2014 22:04:54 +0000 (17:04 -0500)]
render_editable_subattribute() uses link_to_if_arvados_object() if the field is not editable.

10 years ago* Pipeline components are topologically sorted based on :output_of, then sorted lexic...
Peter Amstutz [Fri, 7 Mar 2014 21:55:42 +0000 (16:55 -0500)]
* Pipeline components are topologically sorted based on :output_of, then sorted lexically.
* Refactored code to render pipeline components to be consistent across pipeline instance page and pipeline template page.
* Added "pipelines" tab that shows pipelines that were created from the current template.  Uses the pipeline_instances/show_recent partial.

10 years agoFix CollectionReader treating any collection with additional +hints as
Tom Clegg [Fri, 7 Mar 2014 21:49:47 +0000 (16:49 -0500)]
Fix CollectionReader treating any collection with additional +hints as
an empty manifest.

Now, accept hash+size+anyhints as a UUID, and if the argument looks
like neither a UUID nor a manifest, raise an exception instead of
proceeding with undefined results.