Eric Biagiotti [Mon, 28 Jan 2019 15:14:30 +0000 (10:14 -0500)]
13306: Removing debug echo
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 25 Jan 2019 18:03:12 +0000 (13:03 -0500)]
13306: Adding support for building the dev docker jobs image with py3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 24 Jan 2019 14:38:25 +0000 (09:38 -0500)]
13306: Unicode fix for docker image generation in py3 environment
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 24 Jan 2019 14:37:13 +0000 (09:37 -0500)]
13306: Unicode fixes for the conformance tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 18 Jan 2019 16:08:13 +0000 (11:08 -0500)]
13306: Removing old_div to simplify division operations
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 21:03:03 +0000 (16:03 -0500)]
13306: Removing list wrapping added by futurize to PathMapper objects
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Because cwltool.PathMapper objects have a function called items(), futurize incorrectly added the results of calls to items() to a list object (thinking it was a call to dict.items()). In fact, cwltool.PathMapper.items() already returns a list.
Eric Biagiotti [Thu, 17 Jan 2019 20:55:24 +0000 (15:55 -0500)]
13306: Updating dict items as lists to improve py2 performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 20:40:08 +0000 (15:40 -0500)]
13306: Fixing previous commit to use viewvalues instead of listvalues
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 19:00:05 +0000 (14:00 -0500)]
13306: Updating dict values as a list to improve py2 performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 18:49:39 +0000 (13:49 -0500)]
13306: Updating dict keys as a list to ensure py2/3 compatibility
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 16:21:04 +0000 (11:21 -0500)]
13306: Updating dict value iteration to be more efficient with py2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 16:11:35 +0000 (11:11 -0500)]
13306: Adds test for when get_current_container results in a 404
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 15:04:03 +0000 (10:04 -0500)]
13306: Removes a log handler added during a test, breaking subsequent tests.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 15:02:43 +0000 (10:02 -0500)]
13306: Prevents multiple RunTimeStatusLoggingHandlers from being added
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 16 Jan 2019 01:52:36 +0000 (20:52 -0500)]
13306: Removing unneeded try/except statements in the acr submit tests
Removed the try/except statements and moved the asserts checking if the call to arvados_cwl.main exited properly to the bottom of the tests. In other words, the tests should be using specific call asserts to establish if it ran correctly and checking the exited value should be a last resort to report an unhandled case.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 16:57:45 +0000 (11:57 -0500)]
13306: Updating get_current_container to raise when not a 404
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 16:09:11 +0000 (11:09 -0500)]
13306: Updating depreciated assertEquals
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 15:52:04 +0000 (10:52 -0500)]
13306: Updating depreciated warn function
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 14:46:50 +0000 (09:46 -0500)]
13306: Updates ArvCwlExecutor to properly convert objects to JSON in unicode
json.dumps produces a str object in python 2 (bytestring) and a str object in python 3 (unicode), resulting in incompatibility when writing to the file (expects unicode). In order to prevent using py2 and py3 specific code, the solution is to call encode, which will force the string to be bytes in both languages, then decode to unicode from there.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 15 Jan 2019 13:30:53 +0000 (08:30 -0500)]
13306: Adding py2/3 unicode support to the test_job tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 14 Jan 2019 18:04:55 +0000 (13:04 -0500)]
13306: test_submit additional fixes for py2 unicode support
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 21:38:47 +0000 (16:38 -0500)]
13306: test_submit fixes for py2 unicode support
Makes the stdout passed to cwltool python version dependent for the submit tests. Also adds unicode specifications to calls to the log.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 18:55:49 +0000 (13:55 -0500)]
13306: Adding py2 and py3 compatible byte objects for literals
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 16:22:24 +0000 (11:22 -0500)]
13306: Updated use of built in 'sorted' and a test_util bytestring
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 11 Jan 2019 15:12:52 +0000 (10:12 -0500)]
13306: Added py2 and 3 compatible 'next' for test_job.TestWorkflow.test_run
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 18:54:41 +0000 (13:54 -0500)]
13306: Fixed test_submit.TestCreateTemplate encoding
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:57:49 +0000 (09:57 -0500)]
13306: Fix for test_job.TestJob.test_done and test_done_use_existing_collection
Had to mock a key for the CollectionReader due to 'list' being added to arvjob.py line 249 during stage2 of finalize. The 'list' call interrupts the on demand mocking of the CollectionReader object.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:38:37 +0000 (09:38 -0500)]
13306: Fix for sdk/cwl tests.test_job.TestJob.test_run
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:16:37 +0000 (09:16 -0500)]
13306: Fixed formatting for newly introduced imports
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 10 Jan 2019 14:06:42 +0000 (09:06 -0500)]
13306: Changes to arvados-cwl-runner code after running futurize --stage2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
ebiagiotti [Mon, 7 Jan 2019 20:38:58 +0000 (20:38 +0000)]
13306: Changes to arvados-cwl-runner code after running futurize --stage1
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
ebiagiotti [Mon, 7 Jan 2019 16:19:21 +0000 (16:19 +0000)]
13306: Adding a py3 variant of the sdk/cwl tests to run-tests.sh
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 22:28:56 +0000 (17:28 -0500)]
Merge branch '14691-suggested-ssh-config-update'
closes #14691
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 21:02:54 +0000 (16:02 -0500)]
14691: workbench update, bring in line with documentation
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 4 Jan 2019 15:29:43 +0000 (10:29 -0500)]
14691: documentation update
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 19:02:05 +0000 (14:02 -0500)]
Merge branch '14360-dispatch-cloud'
closes #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 18:58:26 +0000 (13:58 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 18:57:27 +0000 (13:57 -0500)]
14360: Fix error log level on first probe after boot.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 16:00:10 +0000 (11:00 -0500)]
14360: Test for errant Create calls after failure.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 15:03:19 +0000 (10:03 -0500)]
14360: Fix test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:44:45 +0000 (09:44 -0500)]
14360: Fix instance creation limiting.
Scheduler was claiming one of its unalloc instances only if the
container could be scheduled, so the "need new instance" condition was
not triggered for lower-priority containers needing the same instance
type.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:42:49 +0000 (09:42 -0500)]
14360: Fix panic in test when last container is run twice.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:27:37 +0000 (09:27 -0500)]
14360: Debug log when acquiring lock.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 20 Dec 2018 14:25:56 +0000 (09:25 -0500)]
14360: Shutdown pool between tests to eliminate leaking logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 20:08:57 +0000 (15:08 -0500)]
14360: Replace OnComplete/OnCancel with ExecuteContainer callback.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 19:14:58 +0000 (14:14 -0500)]
Merge branch '14327-cwl-unnecessary-collections' refs #14327
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 19:11:23 +0000 (14:11 -0500)]
14360: Call ChooseType just once per container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 19:08:58 +0000 (14:08 -0500)]
14327: Add comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 18:54:40 +0000 (13:54 -0500)]
14360: Remove log spam.
Just don't reserve space for an image if there is no image.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 17:02:05 +0000 (14:02 -0300)]
Merge branch '14640-api-wb-activejob-upgrade'
Closes #14640
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 18 Dec 2018 16:50:51 +0000 (11:50 -0500)]
Fix test_with_arvbox.sh to use https://versions.arvados.org no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 16:17:24 +0000 (13:17 -0300)]
14640: Upgrades WB rails to 4.2.11
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 18 Dec 2018 16:02:41 +0000 (13:02 -0300)]
14640: Upgrades API to rails 4.2.11
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 15:02:55 +0000 (10:02 -0500)]
Merge branch 'master' into 14360-dispatch-cloud
refs #14360
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:59:05 +0000 (02:59 -0500)]
14360: Shutdown between tests to eliminate leaking logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 07:27:27 +0000 (02:27 -0500)]
14360: Clean up stub driver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 18 Dec 2018 04:37:47 +0000 (23:37 -0500)]
14360: Avoid overreporting instances during Create/List race.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 21:23:07 +0000 (16:23 -0500)]
14327: Don't create new collection if source has expected secondaryFiles
If all secondary files/directories are located in the same collection
as the primary file and the paths and names that are consistent with
staging, don't create a new collection.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 17 Dec 2018 20:53:43 +0000 (15:53 -0500)]
We've moved the chat/community support channel from IRC to gitter.im.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 20:14:11 +0000 (15:14 -0500)]
14360: Comment stubServer.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 17:46:54 +0000 (12:46 -0500)]
Update cwltool refs #14510
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:49:43 +0000 (13:49 -0500)]
14360: Locking comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 18:47:14 +0000 (13:47 -0500)]
14360: Fix log spam on normal race condition.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 17 Dec 2018 16:31:52 +0000 (11:31 -0500)]
Update README and community doc page. refs #14617
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 17 Dec 2018 15:57:40 +0000 (10:57 -0500)]
14360: Comment TestDispatchToStubDriver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 20:59:34 +0000 (15:59 -0500)]
11419: Read JSON files in binary mode.
Files opened in text mode do not have a size() method.
refs #11419
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 14 Dec 2018 21:36:50 +0000 (16:36 -0500)]
Set DBName correctly for arvbox demo, hopefully fix ci.commonwl.org
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 14 Dec 2018 17:54:00 +0000 (12:54 -0500)]
Merge branch '14596-check-container-locked'
closes #14596
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Fri, 14 Dec 2018 16:17:23 +0000 (13:17 -0300)]
no issue # Fix and update rvm GPG Key signature issue on test dockerfiles
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:03:29 +0000 (13:03 -0300)]
Merge branch '13006-sync-groups-is_a-filter'
Closes #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 16:02:46 +0000 (13:02 -0300)]
Merge branch '13006-api-is_a-filter'
Refs #13006
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 14 Dec 2018 15:54:49 +0000 (12:54 -0300)]
Merge branch '13006-api-is_a-filter' into 13006-sync-groups-is_a-filter
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 21:03:24 +0000 (18:03 -0300)]
13006: Uses 'is_a' filter again because it's being fixed on the API server.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Thu, 13 Dec 2018 21:02:53 +0000 (18:02 -0300)]
no issue # Fix and update rvm GPG Key signature issue
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 20:53:33 +0000 (17:53 -0300)]
13006: Fail when using is_a filter on uuid attr and prefix_uuid doesn't match.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 20:16:42 +0000 (15:16 -0500)]
14596: crunch-run: don't do anything unless container is Locked.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 20:09:12 +0000 (15:09 -0500)]
Merge branch '14595-leave-modified-at' refs #14595
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 20:08:53 +0000 (15:08 -0500)]
14595: Fix comment.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 19:37:29 +0000 (14:37 -0500)]
14595: Add leave_modified_at_alone
leave_modified_by_user_alone does not affect modified_at
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 19:34:21 +0000 (16:34 -0300)]
Merge branch '14012-arvput-check-cache'
Closes #14012
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 19:21:38 +0000 (16:21 -0300)]
13006: Adds expression index on links.[tail|head]_uuid
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 18:16:29 +0000 (13:16 -0500)]
Merge branch '14596-no-requeue'
fixes #14596
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 17:28:28 +0000 (14:28 -0300)]
13006: Changes is_a filter to use a substring query to support remote UUIDs.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 13 Dec 2018 17:10:52 +0000 (12:10 -0500)]
14596: Use sbatch --no-requeue to avoid bogus container re-runs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 13 Dec 2018 16:11:04 +0000 (13:11 -0300)]
13006: Test exposing the bug
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 15:38:35 +0000 (10:38 -0500)]
Merge branch '14495-crunch-docker-space' refs #14495
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 13 Dec 2018 15:37:26 +0000 (10:37 -0500)]
14495: Add warnings when estimateDockerImageSize gets bad input
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 12 Dec 2018 20:21:51 +0000 (15:21 -0500)]
14360: Fix race between per-container lock and garbage collection.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 21:18:35 +0000 (16:18 -0500)]
Merge branch '11419-text-mode'
closes #11419
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Dec 2018 20:55:58 +0000 (17:55 -0300)]
14012: Enhance test coverage on _cached_manifest_valid() method
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 10 Dec 2018 20:55:11 +0000 (17:55 -0300)]
14012: Split cache file name generation for readability
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 19:06:34 +0000 (14:06 -0500)]
Merge branch '14594-update-cwltool' refs #14594
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:41:12 +0000 (11:41 -0500)]
Merge branch '14538-async-write'
fixes #14538
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:40:13 +0000 (11:40 -0500)]
14594: Update to latest cwltool
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:38:35 +0000 (11:38 -0500)]
14538: Merge branch 'master' into 14538-async-write
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:37:40 +0000 (11:37 -0500)]
11419: Merge branch 'master' into 11419-text-mode
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:31:14 +0000 (11:31 -0500)]
14360: Merge branch 'master' into 14360-dispatch-cloud
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:25:38 +0000 (11:25 -0500)]
Merge branch '14476-cwl-missing-input' refs #14476
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 10 Dec 2018 16:21:05 +0000 (11:21 -0500)]
14360: Kill containers whose priority drops to 0 while running.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 10 Dec 2018 16:20:41 +0000 (11:20 -0500)]
14476: Remove redundant falsey check
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log