arvados.git
4 years ago14713: Migrate old crunch-dispatch-slurm config to new config
Peter Amstutz [Wed, 17 Jul 2019 20:54:01 +0000 (16:54 -0400)]
14713: Migrate old crunch-dispatch-slurm config to new config

Update code to use new config.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoFix test
Peter Amstutz [Mon, 15 Jul 2019 18:02:51 +0000 (14:02 -0400)]
Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoPins mithril version to fix CI pipeline.
Lucas Di Pentima [Wed, 24 Jul 2019 21:31:46 +0000 (18:31 -0300)]
Pins mithril version to fix CI pipeline.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '14287-federated-list'
Tom Clegg [Tue, 23 Jul 2019 17:24:01 +0000 (13:24 -0400)]
Merge branch '14287-federated-list'

refs #14287

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Reword filter restrictions.
Tom Clegg [Tue, 23 Jul 2019 15:27:05 +0000 (11:27 -0400)]
14287: Reword filter restrictions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Comment multi-dimensional map.
Tom Clegg [Mon, 22 Jul 2019 17:05:35 +0000 (13:05 -0400)]
14287: Comment multi-dimensional map.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Fix comment that looked too much like real code.
Tom Clegg [Mon, 22 Jul 2019 17:05:01 +0000 (13:05 -0400)]
14287: Fix comment that looked too much like real code.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Clarify use of separate variables in goroutine.
Tom Clegg [Mon, 22 Jul 2019 17:04:07 +0000 (13:04 -0400)]
14287: Clarify use of separate variables in goroutine.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Merge branch 'master'
Tom Clegg [Mon, 22 Jul 2019 15:25:03 +0000 (11:25 -0400)]
14287: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '14965-arv-mount-py-three'
Eric Biagiotti [Fri, 19 Jul 2019 14:56:36 +0000 (10:56 -0400)]
Merge branch '14965-arv-mount-py-three'

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Improves inode item view
Eric Biagiotti [Thu, 18 Jul 2019 19:54:31 +0000 (15:54 -0400)]
14965: Improves inode item view

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Optimizes dict iteration
Eric Biagiotti [Thu, 18 Jul 2019 19:28:05 +0000 (15:28 -0400)]
14965: Optimizes dict iteration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes assertRegexpMatch deprecation warning
Eric Biagiotti [Thu, 18 Jul 2019 18:52:45 +0000 (14:52 -0400)]
14965: Fixes assertRegexpMatch deprecation warning

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes resource warning when resetting run_test_server
Eric Biagiotti [Wed, 17 Jul 2019 20:29:13 +0000 (16:29 -0400)]
14965: Fixes resource warning when resetting run_test_server

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoRemove package build dockerfiles for debian8 and ubuntu1404.
Ward Vandewege [Wed, 17 Jul 2019 19:53:46 +0000 (15:53 -0400)]
Remove package build dockerfiles for debian8 and ubuntu1404.

refs #15454

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '15028-cwl11-doc-update' refs #15028
Peter Amstutz [Wed, 17 Jul 2019 17:32:06 +0000 (13:32 -0400)]
Merge branch '15028-cwl11-doc-update' refs #15028

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15028: Add link to extensions page
Peter Amstutz [Wed, 17 Jul 2019 15:58:34 +0000 (11:58 -0400)]
15028: Add link to extensions page

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15028: Reorganize CWL documentation some more
Peter Amstutz [Wed, 17 Jul 2019 15:53:22 +0000 (11:53 -0400)]
15028: Reorganize CWL documentation some more

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'master' into 14965-arv-mount-py-three
Eric Biagiotti [Wed, 17 Jul 2019 14:38:46 +0000 (10:38 -0400)]
Merge branch 'master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoFix arvbox no issue #
Peter Amstutz [Wed, 17 Jul 2019 14:35:29 +0000 (10:35 -0400)]
Fix arvbox no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15422-collections-prov-doc' refs #15422
Peter Amstutz [Tue, 16 Jul 2019 20:06:03 +0000 (16:06 -0400)]
Merge branch '15422-collections-prov-doc' refs #15422

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15028: Add upgrade notes about going from CWL v1.0 to v1.1
Peter Amstutz [Tue, 16 Jul 2019 19:57:28 +0000 (15:57 -0400)]
15028: Add upgrade notes about going from CWL v1.0 to v1.1

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '14965-arv-mount-py-three' of git.curoverse.com:arvados into 14965-arv...
Eric Biagiotti [Tue, 16 Jul 2019 18:44:35 +0000 (14:44 -0400)]
Merge branch '14965-arv-mount-py-three' of git.curoverse.com:arvados into 14965-arv-mount-py-three

refs #14965
14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Removes python-llfuse package from arvbox base
Eric Biagiotti [Tue, 16 Jul 2019 18:35:48 +0000 (14:35 -0400)]
14965: Removes python-llfuse package from arvbox base

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoRemoves python-llfuse package from arvbox base
Eric Biagiotti [Tue, 16 Jul 2019 18:35:48 +0000 (14:35 -0400)]
Removes python-llfuse package from arvbox base

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15422: highlight output/log/mount/container_image
Peter Amstutz [Tue, 16 Jul 2019 17:54:22 +0000 (13:54 -0400)]
15422: highlight output/log/mount/container_image

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15422: Restored collection provenance for jobs
Peter Amstutz [Tue, 16 Jul 2019 17:51:09 +0000 (13:51 -0400)]
15422: Restored collection provenance for jobs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'master' into 14965-arv-mount-py-three
Eric Biagiotti [Tue, 16 Jul 2019 16:29:04 +0000 (12:29 -0400)]
Merge branch 'master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes py2 installation
Eric Biagiotti [Tue, 16 Jul 2019 13:21:44 +0000 (09:21 -0400)]
14965: Fixes py2 installation

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15422: Add provenance and used_by to collection API doc
Peter Amstutz [Fri, 12 Jul 2019 18:31:52 +0000 (14:31 -0400)]
15422: Add provenance and used_by to collection API doc

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15422: provenance and used_by endpoints traverse containers
Peter Amstutz [Fri, 12 Jul 2019 15:41:02 +0000 (11:41 -0400)]
15422: provenance and used_by endpoints traverse containers

Fix up workbench rendering of provenance as well.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15422: Provenance for collections handles containers
Peter Amstutz [Thu, 11 Jul 2019 15:25:22 +0000 (11:25 -0400)]
15422: Provenance for collections handles containers

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15422: Collection provenance/used_by supports traversing containers
Peter Amstutz [Tue, 9 Jul 2019 20:55:09 +0000 (16:55 -0400)]
15422: Collection provenance/used_by supports traversing containers

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15319-api-useful-stacktraces'
Lucas Di Pentima [Mon, 15 Jul 2019 20:59:56 +0000 (17:59 -0300)]
Merge branch '15319-api-useful-stacktraces'
Closes #15319

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15319: Fixes example log path and links troubleshooting page from install page.
Lucas Di Pentima [Mon, 15 Jul 2019 20:56:42 +0000 (17:56 -0300)]
15319: Fixes example log path and links troubleshooting page from install page.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '14713-fix-master' refs #14713
Peter Amstutz [Mon, 15 Jul 2019 20:53:42 +0000 (16:53 -0400)]
Merge branch '14713-fix-master' refs #14713

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoFix _dbconfig
Peter Amstutz [Mon, 15 Jul 2019 19:28:30 +0000 (15:28 -0400)]
Fix _dbconfig

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoDon't set ARVADOS_CONFIG if it isn't there.
Peter Amstutz [Mon, 15 Jul 2019 18:42:34 +0000 (14:42 -0400)]
Don't set ARVADOS_CONFIG if it isn't there.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoFix testing on master
Peter Amstutz [Mon, 15 Jul 2019 18:02:51 +0000 (14:02 -0400)]
Fix testing on master

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoarvbox update go version, refactor creating cluster config.
Peter Amstutz [Mon, 15 Jul 2019 17:46:04 +0000 (13:46 -0400)]
arvbox update go version, refactor creating cluster config.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15319: Adds troubleshooting documentation to the Admin section.
Lucas Di Pentima [Mon, 15 Jul 2019 17:34:53 +0000 (14:34 -0300)]
15319: Adds troubleshooting documentation to the Admin section.

Explains both 15318 & 15319 features.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Fixes port waiting regex
Eric Biagiotti [Fri, 12 Jul 2019 20:46:08 +0000 (16:46 -0400)]
14965: Fixes port waiting regex

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch 'master' into 15319-api-useful-stacktraces
Lucas Di Pentima [Fri, 12 Jul 2019 19:53:10 +0000 (16:53 -0300)]
Merge branch 'master' into 15319-api-useful-stacktraces

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15219: Tests for exception backtraces being included on the json log.
Lucas Di Pentima [Fri, 12 Jul 2019 19:50:35 +0000 (16:50 -0300)]
15219: Tests for exception backtraces being included on the json log.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Clarifies decoding in pdh test
Eric Biagiotti [Fri, 12 Jul 2019 19:29:46 +0000 (15:29 -0400)]
14965: Clarifies decoding in pdh test

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '13647-load-old-config'
Tom Clegg [Fri, 12 Jul 2019 19:05:06 +0000 (15:05 -0400)]
Merge branch '13647-load-old-config'

refs #13647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Tweak netstat usage.
Tom Clegg [Fri, 12 Jul 2019 18:49:15 +0000 (14:49 -0400)]
14965: Tweak netstat usage.

Only list listening sockets, since those are the ones we're looking
for. (-l, not -a)

Don't truncate IP/port numbers. (-W)

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Fix default cluster config source. Comment flag usage.
Tom Clegg [Fri, 12 Jul 2019 18:06:09 +0000 (14:06 -0400)]
13647: Fix default cluster config source. Comment flag usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Report python 3 compatibility
Eric Biagiotti [Fri, 12 Jul 2019 17:42:11 +0000 (13:42 -0400)]
14965: Report python 3 compatibility

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Cleans up test output by reducing resource warnings
Eric Biagiotti [Fri, 12 Jul 2019 17:35:11 +0000 (13:35 -0400)]
14965: Cleans up test output by reducing resource warnings

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15219: Logs exceptions with backtraces as part of the JSON log.
Lucas Di Pentima [Fri, 12 Jul 2019 15:27:05 +0000 (12:27 -0300)]
15219: Logs exceptions with backtraces as part of the JSON log.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Mocks FreshBase _poll_time to avoid comparing mock and int
Eric Biagiotti [Fri, 12 Jul 2019 14:18:39 +0000 (10:18 -0400)]
14965: Mocks FreshBase _poll_time to avoid comparing mock and int

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Adds encoding to keep.put argument
Eric Biagiotti [Fri, 12 Jul 2019 14:11:41 +0000 (10:11 -0400)]
14965: Adds encoding to keep.put argument

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '15421-include-param-doc' closes #15421
Peter Amstutz [Thu, 11 Jul 2019 21:22:28 +0000 (17:22 -0400)]
Merge branch '15421-include-param-doc' closes #15421

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Simplifies previous fix to FuseMagicTest
Eric Biagiotti [Thu, 11 Jul 2019 21:07:10 +0000 (17:07 -0400)]
14965: Simplifies previous fix to FuseMagicTest

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes FuseMountTest encoding
Eric Biagiotti [Thu, 11 Jul 2019 21:06:00 +0000 (17:06 -0400)]
14965: Fixes FuseMountTest encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes rmdir and rename op encoding
Eric Biagiotti [Thu, 11 Jul 2019 21:04:40 +0000 (17:04 -0400)]
14965: Fixes rmdir and rename op encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '15003-ensure-all-sample-keys'
Tom Clegg [Thu, 11 Jul 2019 21:02:38 +0000 (17:02 -0400)]
Merge branch '15003-ensure-all-sample-keys'

closes #15003

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Add MungeLegacyConfigArgs.
Tom Clegg [Thu, 11 Jul 2019 21:00:45 +0000 (17:00 -0400)]
13647: Add MungeLegacyConfigArgs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoarvbox rotates its TLS certificates when they expire
Peter Amstutz [Thu, 11 Jul 2019 20:59:36 +0000 (16:59 -0400)]
arvbox rotates its TLS certificates when they expire

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15003: Ensure all map[string]* have sample keys.
Tom Clegg [Thu, 11 Jul 2019 19:51:09 +0000 (15:51 -0400)]
15003: Ensure all map[string]* have sample keys.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agodoc: on the config migration page, make sure to include RAILS_ENV in the bundle
Ward Vandewege [Thu, 11 Jul 2019 19:47:59 +0000 (15:47 -0400)]
doc: on the config migration page, make sure to include RAILS_ENV in the bundle
commands for Workbench.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agodoc: on the config migration page, make sure to include RAILS_ENV in the bundle
Ward Vandewege [Thu, 11 Jul 2019 19:45:16 +0000 (15:45 -0400)]
doc: on the config migration page, make sure to include RAILS_ENV in the bundle
commands.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years ago13647: Add comments.
Tom Clegg [Thu, 11 Jul 2019 19:22:22 +0000 (15:22 -0400)]
13647: Add comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15421: Improve wording
Peter Amstutz [Thu, 11 Jul 2019 19:12:32 +0000 (15:12 -0400)]
15421: Improve wording

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15003-real-configs-flagged-unknown'
Tom Clegg [Thu, 11 Jul 2019 17:35:09 +0000 (13:35 -0400)]
Merge branch '15003-real-configs-flagged-unknown'

refs #15003

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: ARVADOS_CONFIG env var overrides default cluster config path.
Tom Clegg [Thu, 11 Jul 2019 17:32:23 +0000 (13:32 -0400)]
13647: ARVADOS_CONFIG env var overrides default cluster config path.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15454-stop-building-debian8-and-ubuntu1404'
Ward Vandewege [Thu, 11 Jul 2019 17:20:23 +0000 (13:20 -0400)]
Merge branch '15454-stop-building-debian8-and-ubuntu1404'

closes #15454

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '15318-ReqIds-on-api-errors'
Lucas Di Pentima [Thu, 11 Jul 2019 15:57:51 +0000 (12:57 -0300)]
Merge branch '15318-ReqIds-on-api-errors'
Closes #15318

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15003: Fix errant warnings on Workbench configs.
Tom Clegg [Thu, 11 Jul 2019 15:57:14 +0000 (11:57 -0400)]
15003: Fix errant warnings on Workbench configs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Merge branch 'master' into 14287-federated-list
Tom Clegg [Thu, 11 Jul 2019 15:13:12 +0000 (11:13 -0400)]
14287: Merge branch 'master' into 14287-federated-list

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Return recognizable error when no clusters are defined.
Tom Clegg [Thu, 11 Jul 2019 15:06:12 +0000 (11:06 -0400)]
13647: Return recognizable error when no clusters are defined.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Fixes mkdir name encoding
Eric Biagiotti [Thu, 11 Jul 2019 14:37:24 +0000 (10:37 -0400)]
14965: Fixes mkdir name encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago13647: Load one example value from old keepstore config.
Tom Clegg [Wed, 10 Jul 2019 20:10:50 +0000 (16:10 -0400)]
13647: Load one example value from old keepstore config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Suppress "exit status 1" after config-check diff output.
Tom Clegg [Wed, 10 Jul 2019 20:10:52 +0000 (16:10 -0400)]
13647: Suppress "exit status 1" after config-check diff output.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoStop building debian8 and ubuntu1404.
Ward Vandewege [Thu, 11 Jul 2019 13:51:03 +0000 (09:51 -0400)]
Stop building debian8 and ubuntu1404.

refs #15454

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years ago15003: Fix errant warnings on PostgreSQL params and InternalURLs.
Tom Clegg [Wed, 10 Jul 2019 19:09:10 +0000 (15:09 -0400)]
15003: Fix errant warnings on PostgreSQL params and InternalURLs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUse go 1.12 in package building (part 2).
Ward Vandewege [Wed, 10 Jul 2019 18:37:19 +0000 (14:37 -0400)]
Use go 1.12 in package building (part 2).

refs #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '13913-crunchstat-summary-tmpdir'
Tom Morris [Wed, 10 Jul 2019 15:34:03 +0000 (11:34 -0400)]
Merge branch '13913-crunchstat-summary-tmpdir'

Fixes #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoWe require go 1.12, update the run-tests.sh version check.
Ward Vandewege [Wed, 10 Jul 2019 13:47:08 +0000 (09:47 -0400)]
We require go 1.12, update the run-tests.sh version check.

Also use go 1.12 in package building.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoOur workbench and api server packages now have a runtime dependency on
Ward Vandewege [Tue, 9 Jul 2019 22:23:12 +0000 (18:23 -0400)]
Our workbench and api server packages now have a runtime dependency on
arvados-server for configuration validation.

Our workbench package now also has a build-time dependency on arvados-server,
because it needs some configuration while precompiling assets.

closes #15449
refs #14812

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoFix arvbox demo build. Add Services.Controller to config.yml
Peter Amstutz [Tue, 9 Jul 2019 21:29:40 +0000 (17:29 -0400)]
Fix arvbox demo build.  Add Services.Controller to config.yml

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15318: Updates go components' tests to consider the req-ids.
Lucas Di Pentima [Tue, 9 Jul 2019 21:23:51 +0000 (18:23 -0300)]
15318: Updates go components' tests to consider the req-ids.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15380-full-text-search-docs'
Eric Biagiotti [Tue, 9 Jul 2019 20:34:14 +0000 (16:34 -0400)]
Merge branch '15380-full-text-search-docs'

refs #15380

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15421: Elaborate a little more on what include= is useful for
Peter Amstutz [Tue, 9 Jul 2019 19:51:06 +0000 (15:51 -0400)]
15421: Elaborate a little more on what include= is useful for

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fixes token expiry time mock, byte data, and open mock
Eric Biagiotti [Tue, 9 Jul 2019 19:47:25 +0000 (15:47 -0400)]
14965: Fixes token expiry time mock, byte data, and open mock

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15421: Document "includes" parameter to group contents endpoint
Peter Amstutz [Tue, 9 Jul 2019 19:42:46 +0000 (15:42 -0400)]
15421: Document "includes" parameter to group contents endpoint

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15318: Updates tests.
Lucas Di Pentima [Tue, 9 Jul 2019 19:38:04 +0000 (16:38 -0300)]
15318: Updates tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Fixes replace test encoding
Eric Biagiotti [Tue, 9 Jul 2019 19:26:07 +0000 (15:26 -0400)]
14965: Fixes replace test encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes magic directory test data
Eric Biagiotti [Tue, 9 Jul 2019 19:24:18 +0000 (15:24 -0400)]
14965: Fixes magic directory test data

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15318: Adds X-Request-Id value to every error response. Fixes test.
Lucas Di Pentima [Tue, 9 Jul 2019 19:15:32 +0000 (16:15 -0300)]
15318: Adds X-Request-Id value to every error response. Fixes test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15318: Updates test to expect X-Request-Id value on error messages.
Lucas Di Pentima [Tue, 9 Jul 2019 19:09:53 +0000 (16:09 -0300)]
15318: Updates test to expect X-Request-Id value on error messages.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Fixes crunchstat test assertion
Eric Biagiotti [Tue, 9 Jul 2019 18:44:06 +0000 (14:44 -0400)]
14965: Fixes crunchstat test assertion

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes netstat regex string
Eric Biagiotti [Tue, 9 Jul 2019 18:43:02 +0000 (14:43 -0400)]
14965: Fixes netstat regex string

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoFix up test gold standard references for new output
Tom Morris [Tue, 9 Jul 2019 18:04:41 +0000 (14:04 -0400)]
Fix up test gold standard references for new output

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoAdd a simple temp disk utilization based recommendation.
Tom Morris [Wed, 3 Jul 2019 17:52:34 +0000 (13:52 -0400)]
Add a simple temp disk utilization based recommendation.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoGraph temp disk usage
Tom Morris [Tue, 23 Apr 2019 00:48:53 +0000 (20:48 -0400)]
Graph temp disk usage

Plots temp disk space used as well as total available.

Also adds support for multiple metrics per graph and
groups CPU and network stats by category.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years ago14965: Add sanity check for netstat.
Tom Clegg [Tue, 9 Jul 2019 17:42:27 +0000 (13:42 -0400)]
14965: Add sanity check for netstat.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Adds net-tools to arvbox for run-test-server.py netstat update
Eric Biagiotti [Tue, 9 Jul 2019 15:29:56 +0000 (11:29 -0400)]
14965: Adds net-tools to arvbox for run-test-server.py netstat update

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Use netstat instead of lsof to check for listening process.
Tom Clegg [Tue, 9 Jul 2019 14:50:06 +0000 (10:50 -0400)]
14965: Use netstat instead of lsof to check for listening process.

`lsof -t -i tcp:1234` hangs if a zombie process exists on the system.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>