Peter Amstutz [Wed, 13 Mar 2019 19:52:20 +0000 (15:52 -0400)]
14322: Update workbench to use new collectionUUID
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 19:25:33 +0000 (15:25 -0400)]
14322: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 18:57:53 +0000 (14:57 -0400)]
14322: Tweak documentation to mention uuid keep URI form
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 18:57:20 +0000 (14:57 -0400)]
14322: CollectionFsAccess accepts UUIDs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 12 Mar 2019 20:39:12 +0000 (16:39 -0400)]
14322: Tests for edge cases
Report unknown uuids and mismatches between current collection
PDH (from API server lookup) and location PDH.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Mar 2019 21:42:09 +0000 (17:42 -0400)]
14322: Propagate collection UUID to container mount
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Mar 2019 21:02:14 +0000 (17:02 -0400)]
14322: Convert uuids on input to portable data hashes
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Mar 2019 14:10:15 +0000 (10:10 -0400)]
Fix a-c-r printing logs on error refs #14870
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Mar 2019 19:42:18 +0000 (16:42 -0300)]
Merge branch '14966-api-test-hang-fix'
Closes #14966
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 7 Feb 2019 22:07:08 +0000 (17:07 -0500)]
Arvbox updates, no issue #
* Bump Go version, add openjdk.
* Bump node version. Make sure node is in path.
* Fix $HOME in setup scripts.
* Add "arvbox devenv" command which creates and enters a container
environment suitable for interactively running development tools
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Mar 2019 18:56:00 +0000 (15:56 -0300)]
14966: Implements cleanup on test case teardown.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Mar 2019 23:52:25 +0000 (20:52 -0300)]
14966: Fixes test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 13 Mar 2019 15:42:30 +0000 (11:42 -0400)]
Switch to stretch-slim as the base image for arvados/jobs, this results in a
smaller image.
arvados/jobs 1.3.1.
20190308210512 2a6c5e4993e7 4 days ago 284MB
arvados/jobs latest
0cfff29120dd 20 minutes ago 232MB
refs #14819
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Mar 2019 15:09:14 +0000 (12:09 -0300)]
Merge branch '13593-async-perm-graph-update'
Closes #13593
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 20:32:43 +0000 (17:32 -0300)]
Merge branch '13937-keepstore-prometheus'
Closes #13937
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 18:58:57 +0000 (15:58 -0300)]
13593: Moves & enhances group creation with async=true test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 18:19:36 +0000 (15:19 -0300)]
13937: Removes the 'any' operation type for a better way of testing driver labels
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 15:04:49 +0000 (12:04 -0300)]
13593: Cleans up old experimental code.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 14:38:09 +0000 (11:38 -0300)]
13593: Changes default async permission update interval. Clears cache.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 12 Mar 2019 14:32:05 +0000 (10:32 -0400)]
Some build script housekeeping: fix the detection logic for the existence of
Debian/Ubuntu packages on our apt repositories.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 12 Mar 2019 14:31:13 +0000 (10:31 -0400)]
Build the cwltest package, which lives out of tree.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 14:10:51 +0000 (11:10 -0300)]
13937: Removes unnecessary data passing on tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 12:51:11 +0000 (09:51 -0300)]
13593: Updates API documentation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 12 Mar 2019 12:33:30 +0000 (09:33 -0300)]
13593: Adds 'async' parameter to groups create & update calls for perms updates.
When async=true, the permission graph update will be deferred by the configured
amount of seconds at 'async_permissions_update_interval' (default: 60)
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 11 Mar 2019 20:21:26 +0000 (16:21 -0400)]
Fix error message.
No issue #.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Mon, 11 Mar 2019 15:04:44 +0000 (11:04 -0400)]
Explicitly print the version numbers of virtualenv, pip, setuptools and wheel
when building Python packages.
refs #14936
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 11 Mar 2019 04:34:33 +0000 (00:34 -0400)]
Merge branch '14938-unreliable-test'
fixes #14938
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 11 Mar 2019 04:32:22 +0000 (00:32 -0400)]
14938: Fix unreliable test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 21:05:12 +0000 (16:05 -0500)]
Merge branch '14880-keepdocker-argparse' refs #14880
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 21:03:03 +0000 (16:03 -0500)]
14880: Fix help message typo.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 8 Mar 2019 20:56:17 +0000 (17:56 -0300)]
13937: Adds tests for operation & I/O counters.
Added {"operation": "any"} to opsCounters so that it's easy to check on tests,
because the kind of operation depends on the driver and the tests were
implemented as part of the volume generic tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 20:19:59 +0000 (15:19 -0500)]
Merge branch '14291-cdc-aws' refs #14291
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 20:18:44 +0000 (15:18 -0500)]
14291: EbsVolumeType → EBSVolumeType
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Mar 2019 15:14:27 +0000 (10:14 -0500)]
14880: Fix argument parsing issues
arv-keepdocker passes through some flags to arv-put. The strategy it
uses is to remove known flags and pass through unknown flags. However
it doesn't know if an unknown flag takes a value or not, so it treats
the values as a positional argument rather than the value
corresponding to the unknown flag.
* Move positional arguments from "keepdocker_parser" to "arg_parser"
* Strip positional arguments (image name, tag) from arguments before
parsing known keepdocker_parser flags.
* Additionally move a couple of flags that were mistakenly added to
put.run_opts (and thus appearing in the arv-keepdocker help despite
making no sense) that should have been in put.upload_opts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 21:53:14 +0000 (16:53 -0500)]
14291: Exclude both "shutting-down" and "terminated" instances.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 21:27:18 +0000 (16:27 -0500)]
14291: Generate key fingerprints that work with AWS. Filter out terminated instances
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 19:35:01 +0000 (14:35 -0500)]
Merge branch '14920-unknown-booting-race'
fixes #14920
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 19:27:13 +0000 (14:27 -0500)]
14920: Update metrics when worker state changes idle->running.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 19:16:40 +0000 (14:16 -0500)]
14291: Add EbsVolumeType, also test fixes
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 19:16:11 +0000 (14:16 -0500)]
14291: Tweak Scratch/AddedScratch/IncludedScratch behavior
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 17:58:04 +0000 (12:58 -0500)]
Merge branch '14870-retry-logs' refs #14870
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 16:43:05 +0000 (11:43 -0500)]
14291: Report errors from ImportKeyPair
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 16:26:58 +0000 (11:26 -0500)]
14291: Try again with vendor.json
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 16:20:38 +0000 (11:20 -0500)]
14920: Improve comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 7 Mar 2019 14:55:15 +0000 (09:55 -0500)]
14291: Another update to vendor.json
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fernando Monserrat [Thu, 7 Mar 2019 14:52:25 +0000 (11:52 -0300)]
refs #14891 .Merge branch '14891-upload-to-testing-repo'
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 7 Mar 2019 14:48:58 +0000 (11:48 -0300)]
issue #14891 fix spaces and initialize RC
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Thu, 7 Mar 2019 14:42:43 +0000 (11:42 -0300)]
13937: Simplifies volume counter stats assignments. Fixes test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 7 Mar 2019 01:51:59 +0000 (20:51 -0500)]
14920: Fix state==unknown during create/list race.
Recognize a new/booting node by its "instance secret" tag instead of
relying on Create() to return the new instance's ID quickly.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 22:25:10 +0000 (19:25 -0300)]
13937: Fixes metrics naming
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 22:12:20 +0000 (19:12 -0300)]
13937: Simplifies arg passing on Start() funcs
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:35:44 +0000 (16:35 -0500)]
14291: Add more missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:30:03 +0000 (16:30 -0500)]
14291: Add more missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:25:15 +0000 (16:25 -0500)]
14291: Add missing packages to vendor
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 21:16:59 +0000 (16:16 -0500)]
14870: Oops need to fix edge case assertion, too
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 21:09:28 +0000 (18:09 -0300)]
Merge branch 'master' into 13937-keepstore-prometheus
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 20:59:06 +0000 (15:59 -0500)]
14870: Adjust edge case some more, a file named '\' isn't legal either
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 20:39:44 +0000 (15:39 -0500)]
14291: Introduce "AddedScratch" and "IncludedScratch" to InstanceType
EC2 driver imports public keys on the fly.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Mar 2019 19:46:06 +0000 (14:46 -0500)]
14870: Remove \x01 from edge cases
It is no longer accepted by the API server, manifests with control
characters like that are invalid.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Mar 2019 19:43:29 +0000 (14:43 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'
refs #14885
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 19:38:20 +0000 (16:38 -0300)]
Merge branch '14916-rubysdk-upgrade-note'
Closes #14916
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 6 Mar 2019 17:44:11 +0000 (14:44 -0300)]
14916: Rephrases upgrade notes. Enhances example script with success message.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Wed, 6 Mar 2019 15:03:49 +0000 (12:03 -0300)]
issue #14891 remove -x
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 5 Mar 2019 19:19:36 +0000 (16:19 -0300)]
issue #14891 Update to receive param rc to build for release candidates
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 19:08:10 +0000 (14:08 -0500)]
Merge branch '14807-zero-metrics'
refs #14807
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 04:00:00 +0000 (23:00 -0500)]
14807: Start reporting metrics immediately.
...instead of waiting for the first notify event.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 19:07:47 +0000 (14:07 -0500)]
14885: Reverts back to parse_datetime_as_naive
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 5 Mar 2019 19:00:58 +0000 (16:00 -0300)]
14916: Adds upgrading note with script example for collection checking.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Tue, 5 Mar 2019 16:40:57 +0000 (13:40 -0300)]
issue #14891 upload rcs . Add verbose
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Tom Clegg [Tue, 5 Mar 2019 16:39:13 +0000 (11:39 -0500)]
Merge branch '14911-azure-panic'
fixes #14911
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 16:14:44 +0000 (11:14 -0500)]
Merge branch '14886-acr-recursion-runtime-error'
refs #14886
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 16:11:19 +0000 (11:11 -0500)]
14886: Fixes typo
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Mar 2019 14:42:16 +0000 (09:42 -0500)]
14886: Fixes mock issue between tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Tue, 5 Mar 2019 14:15:01 +0000 (09:15 -0500)]
14291: Tweak symbol naming
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Mar 2019 21:32:23 +0000 (16:32 -0500)]
14870: Fix another test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 4 Mar 2019 20:57:05 +0000 (15:57 -0500)]
14911: Fix initialization order.
Nil az.ctx was being passed to ListKeys(), causing panic.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Mon, 4 Mar 2019 20:45:41 +0000 (17:45 -0300)]
issue #14891 upload rcs to testing repo
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Peter Amstutz [Mon, 4 Mar 2019 20:08:27 +0000 (15:08 -0500)]
14870: Add tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 4 Mar 2019 19:44:39 +0000 (14:44 -0500)]
14886: Updates test to fail for the more specific case
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 22:04:57 +0000 (17:04 -0500)]
14886: Adds flag to stop infinite logs
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 21:54:30 +0000 (16:54 -0500)]
14886: Simplifies test mocking
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:38:44 +0000 (16:38 -0500)]
14870: Copy previous container logs to "container uuid" subdir
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 21:24:25 +0000 (16:24 -0500)]
14886: Adds a test that reproduces the error
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:24:13 +0000 (16:24 -0500)]
14870: Update Arvados Ruby SDK gem dependency for bugfix
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 20:48:56 +0000 (15:48 -0500)]
14870: Saving previous retry logs into collection WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 21:20:59 +0000 (16:20 -0500)]
Merge branch '14870-ruby-sdk-cp-r' refs #14870
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 20:51:08 +0000 (15:51 -0500)]
14870: Ruby SDK fix for copying collection into root of an empty collection
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Mar 2019 15:02:58 +0000 (10:02 -0500)]
Merge branch '14885-ciso-and-conda-packaging-pr'
refs #14885
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 1 Mar 2019 14:55:24 +0000 (09:55 -0500)]
Merge branch '14844-cdc-azure-fixes' closes #14844
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 14:30:11 +0000 (09:30 -0500)]
Merge branch '14819-arvados-jobs-on-stretch'
closes #14819
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 14:29:16 +0000 (09:29 -0500)]
14819: Merge branch 'master' into 14819-arvados-jobs-on-stretch
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 1 Mar 2019 13:34:28 +0000 (08:34 -0500)]
14819: use the python executable from the python-arvados-cwl-runner package
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 28 Feb 2019 20:47:59 +0000 (15:47 -0500)]
14844: Azure fixes
* If PrivateIPAddress somehow isn't defined, return empty
string (don't panic)
* If VM create fails, attempt to immediately clean the VHD and NIC
corresponding to that VM (if it doesn't work, cleanup processes
should still get around to it.)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:33:38 +0000 (15:33 -0500)]
Merge branch '9865-cwl-fix-ignored-exceptions'
refs #9865
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:32:48 +0000 (15:32 -0500)]
9865: Removes trailing whitespace
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:18:55 +0000 (15:18 -0500)]
14885: Adds python2 conditional pytz import
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Feb 2019 20:17:31 +0000 (15:17 -0500)]
14885: Removes as_naive datetime parsing distinction
parse_datetime_as_naive should only be used in instances where we want to parse a string that we know contains timezone info AND we do not want to include it in the resulting datetime object. Otherwise, parse_datetime is preferred for parsing strings with or without timezone info.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Thu, 28 Feb 2019 20:07:29 +0000 (15:07 -0500)]
Fix typo.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Thu, 28 Feb 2019 18:58:35 +0000 (15:58 -0300)]
13937: Adds counters to azure driver.
Also, generalizes counters usage and updates unix & s3 volume drivers.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Thu, 7 Feb 2019 21:06:47 +0000 (16:06 -0500)]
14819: upgrade the arvados/jobs image to Debian Stretch. Also add argument to
the build script to choose which package repo to build from.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
projects / arvados.git / log