Brett Smith [Mon, 31 Mar 2014 13:50:01 +0000 (09:50 -0400)]
doc: tutorial-firstscript style consistency.
Conflicts:
doc/user/tutorials/tutorial-firstscript.html.textile.liquid
Brett Smith [Thu, 27 Mar 2014 18:01:27 +0000 (14:01 -0400)]
doc: tutorial-pipeline-workbench style+clarity.
Brett Smith [Thu, 27 Mar 2014 16:46:19 +0000 (12:46 -0400)]
doc: Fix tutorial-keep typos and consistency.
Brett Smith [Thu, 27 Mar 2014 16:15:51 +0000 (12:15 -0400)]
doc: Fix api-tokens typos and consistency.
Brett Smith [Thu, 27 Mar 2014 15:56:55 +0000 (11:56 -0400)]
doc: Fix ssh-access typos and consistency.
Brett Smith [Thu, 27 Mar 2014 15:09:00 +0000 (11:09 -0400)]
doc: Style and consistency in user/index.
Tom Clegg [Fri, 28 Mar 2014 21:14:52 +0000 (17:14 -0400)]
Bump arvados-cli version to use output_is_persistent feature. refs #1932
Tom Clegg [Fri, 28 Mar 2014 19:21:03 +0000 (15:21 -0400)]
Merge branch '1932-job-output-persistent'
closes #1932
Tom Clegg [Fri, 28 Mar 2014 18:52:18 +0000 (14:52 -0400)]
Fetch --tags, otherwise we miss out on commits that are tagged but are
not on a branch.
Tom Clegg [Fri, 28 Mar 2014 16:51:29 +0000 (12:51 -0400)]
Add dependency on latest arv-run-pipeline-instance.
Tom Clegg [Fri, 28 Mar 2014 16:31:14 +0000 (12:31 -0400)]
Clarify c_already_finished comments.
Tim Pierce [Fri, 28 Mar 2014 15:58:32 +0000 (11:58 -0400)]
Merge branch '2291-new-keepd-read-blocks'
Tim Pierce [Fri, 28 Mar 2014 15:56:08 +0000 (11:56 -0400)]
Addressing code review comments (refs #2485, refs #2295)
os.Remove(f.Name()) is clearer and less scary than os.Remove(PROC_MOUNTS).
Tim Pierce [Fri, 28 Mar 2014 15:08:11 +0000 (11:08 -0400)]
Unit test for FindKeepVolumes (refs #2295)
Tom Clegg [Fri, 28 Mar 2014 00:51:07 +0000 (20:51 -0400)]
Move "empty blob" magic number into a Collection class method, remove
some old unused code and commented-out debug statements.
Tom Clegg [Fri, 28 Mar 2014 00:30:08 +0000 (20:30 -0400)]
Fix some whitespace complaints.
Tom Clegg [Fri, 28 Mar 2014 00:25:07 +0000 (20:25 -0400)]
Merge branch 'master' into 1932-job-output-persistent
Conflicts:
doc/user/tutorials/tutorial-firstscript.html.textile.liquid
doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid
sdk/cli/bin/arv-run-pipeline-instance
services/api/db/schema.rb
Tom Clegg [Thu, 27 Mar 2014 22:30:27 +0000 (18:30 -0400)]
Fix migration crash when script_version is nil.
Tom Clegg [Thu, 27 Mar 2014 21:59:34 +0000 (17:59 -0400)]
Ignore "cache directory does not exist" error when clearing cache at
server startup.
radhika chippada [Thu, 27 Mar 2014 21:20:55 +0000 (17:20 -0400)]
Merge branch '2068-reset-user'
radhika chippada [Thu, 27 Mar 2014 21:20:24 +0000 (17:20 -0400)]
reload object before unsetup
Brett Smith [Thu, 27 Mar 2014 21:12:47 +0000 (17:12 -0400)]
doc: Make index adorable.
It's so cute!
radhika chippada [Thu, 27 Mar 2014 19:04:46 +0000 (15:04 -0400)]
minor cleanup
radhika chippada [Thu, 27 Mar 2014 18:48:39 +0000 (14:48 -0400)]
Clean up the users controller
radhika chippada [Thu, 27 Mar 2014 17:47:48 +0000 (13:47 -0400)]
Update tests to match controller updates towards admin_required
radhika chippada [Thu, 27 Mar 2014 16:30:55 +0000 (12:30 -0400)]
Use before_filter admin_required in the users controller for setup and unsetup actions
radhika chippada [Thu, 27 Mar 2014 16:09:23 +0000 (12:09 -0400)]
Improve the api call invocation
radhika chippada [Thu, 27 Mar 2014 15:57:18 +0000 (11:57 -0400)]
Update UI to use button_to instead of link_to to deactivate the user
radhika chippada [Thu, 27 Mar 2014 15:44:53 +0000 (11:44 -0400)]
Merge branch 'master' into 2068-reset-user
radhika chippada [Thu, 27 Mar 2014 15:44:12 +0000 (11:44 -0400)]
Update the text on the deactivate link
radhika chippada [Thu, 27 Mar 2014 15:23:16 +0000 (11:23 -0400)]
Use post method instead of get method when invoking the unsetup method from the api server.
radhika chippada [Thu, 27 Mar 2014 15:05:08 +0000 (11:05 -0400)]
Story #2068: Invoke the user -> unsetup method when an admin user clicks on the deactivate button in workbench
radhika chippada [Thu, 27 Mar 2014 14:10:00 +0000 (10:10 -0400)]
Expose user unsetup method from the API server. Added functional tests.
Peter Amstutz [Thu, 27 Mar 2014 13:27:13 +0000 (09:27 -0400)]
Merged branch 1741-internal-git-repo into 2333-crunch-dispatch-token-management
Peter Amstutz [Thu, 27 Mar 2014 12:54:53 +0000 (08:54 -0400)]
Fixed dangling 'end'
Peter Amstutz [Thu, 27 Mar 2014 12:41:10 +0000 (08:41 -0400)]
Merge branch 'master' into 2333-crunch-dispatch-token-management
Peter Amstutz [Thu, 27 Mar 2014 12:41:01 +0000 (08:41 -0400)]
Stylistic changes based on comments from Tom/Brett
Peter Amstutz [Thu, 27 Mar 2014 12:37:33 +0000 (08:37 -0400)]
Merge branch '2051-nondeterministic-jobs'
Tim Pierce [Wed, 26 Mar 2014 21:34:50 +0000 (17:34 -0400)]
Merge branch '2291-new-keepd-read-blocks' (fixes #2291)
Tim Pierce [Wed, 26 Mar 2014 21:06:59 +0000 (17:06 -0400)]
Incorporating code review comments (refs #2291, refs #2438)
Tim Pierce [Wed, 26 Mar 2014 20:58:49 +0000 (16:58 -0400)]
Improve readability of unit tests. (refs #2291)
Pass *testing.T object into setup/store functions to reduce
error-checking overhead.
Tom Clegg [Tue, 25 Mar 2014 22:50:31 +0000 (18:50 -0400)]
Add list of in-progress/planned SDKs.
Tom Clegg [Tue, 25 Mar 2014 22:36:17 +0000 (18:36 -0400)]
Add Ruby SDK page.
Tom Clegg [Tue, 25 Mar 2014 21:38:02 +0000 (17:38 -0400)]
Fix broken links and duplicate titles.
Tom Clegg [Mon, 10 Mar 2014 23:00:38 +0000 (19:00 -0400)]
Add command line SDK page.
Tom Clegg [Mon, 10 Mar 2014 22:33:17 +0000 (18:33 -0400)]
Add Perl SDK page.
Peter Amstutz [Wed, 26 Mar 2014 18:58:57 +0000 (14:58 -0400)]
Fixes "sec_error_reused_issuer_and_serial" SSL error in Firefox.
Peter Amstutz [Wed, 26 Mar 2014 18:19:10 +0000 (14:19 -0400)]
Added fix to workbench dashboard so that workbench integration tests pass.
Added slightly helpful failure message to test assertion.
Fixed non-normalized collection uuids in fixtures.
Peter Amstutz [Wed, 26 Mar 2014 17:16:37 +0000 (13:16 -0400)]
Merge branch 'master' into 2051-nondeterministic-jobs
Conflicts:
doc/README
doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid
Peter Amstutz [Wed, 26 Mar 2014 12:57:00 +0000 (08:57 -0400)]
Added more tests and more aggressive input checking.
Tom Clegg [Tue, 25 Mar 2014 23:14:09 +0000 (19:14 -0400)]
Merge branch '2412-do-not-reuse-task-work-dirs'
Peter Amstutz [Tue, 25 Mar 2014 21:01:59 +0000 (17:01 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados
Peter Amstutz [Tue, 25 Mar 2014 21:01:45 +0000 (17:01 -0400)]
Fixes #2047: Catch connection errors in 'arv' and report the error nicely
instead of dumping a backtrace.
Tim Pierce [Tue, 25 Mar 2014 20:57:37 +0000 (16:57 -0400)]
Incorporating comments from code review (refs #2438, refs #2291)
Peter Amstutz [Tue, 25 Mar 2014 20:51:57 +0000 (16:51 -0400)]
Reworked input validation on find_commit_range (for real this time!) and added tests.
Fixed descriptive text in tutorial-job1.
Removed dead code.
Brett Smith [Tue, 25 Mar 2014 20:11:48 +0000 (16:11 -0400)]
Merge branch '2288-smoke-test'
Peter Amstutz [Tue, 25 Mar 2014 19:24:55 +0000 (15:24 -0400)]
Removed trailing whitespace.
Peter Amstutz [Tue, 25 Mar 2014 19:24:15 +0000 (15:24 -0400)]
Fixed tests
Improved version string validation in find_commit_range
Removed spurious debugging flags
Removed dead code from commit.rb
Removed trailing whitespace
Fixed capitalization of Arvados in documentation
Brett Smith [Tue, 25 Mar 2014 19:10:24 +0000 (15:10 -0400)]
workbench: Timeout integration test Rails launch.
radhika chippada [Tue, 25 Mar 2014 18:50:38 +0000 (14:50 -0400)]
Merge branch 'master' into 2187-enhance-user-setup
radhika chippada [Tue, 25 Mar 2014 18:50:02 +0000 (14:50 -0400)]
Minor test updates
Peter Amstutz [Tue, 25 Mar 2014 18:40:01 +0000 (14:40 -0400)]
Merge branch 'master' into 2051-nondeterministic-jobs
Brett Smith [Tue, 25 Mar 2014 18:36:48 +0000 (14:36 -0400)]
workbench: Improve integration test Rails launch.
The previous version was susceptible to a race condition where it
would read the file after Rails created it, but before it actually
wrote a pid to it. This would cause the rake test task to kill itself
later by running Process.kill('TERM', 0).
radhika chippada [Tue, 25 Mar 2014 18:09:44 +0000 (14:09 -0400)]
The controller invokes the create links method from the model when working on an existing user.
Brett Smith [Tue, 25 Mar 2014 18:01:23 +0000 (14:01 -0400)]
workbench: Document deployment Bundle testing.
Tom Clegg [Tue, 25 Mar 2014 17:59:20 +0000 (13:59 -0400)]
Update controller action name in functional test. refs #1750
Tom Clegg [Tue, 25 Mar 2014 17:43:24 +0000 (13:43 -0400)]
Merge branch '1750-remove-old-schema-doc'
closes #1750
radhika chippada [Tue, 25 Mar 2014 17:23:28 +0000 (13:23 -0400)]
setup method in user model assumes that the user object passed in is valid and hence no longer tries to find it.
Tim Pierce [Tue, 25 Mar 2014 16:53:40 +0000 (12:53 -0400)]
Unit test TestGetBlockCorrupt. (refs #2291)
radhika chippada [Tue, 25 Mar 2014 16:32:35 +0000 (12:32 -0400)]
Ground work to remove found object logic from user model's setup method
Tom Clegg [Tue, 25 Mar 2014 16:20:18 +0000 (12:20 -0400)]
Merge branch 'master' into 1932-job-output-persistent
Tom Clegg [Tue, 25 Mar 2014 15:33:29 +0000 (11:33 -0400)]
Mark output as persistent at end of job, if Job record says to do so.
Tom Clegg [Tue, 25 Mar 2014 15:27:22 +0000 (11:27 -0400)]
Add/explain output_is_persistent flag in example pipelines.
Tom Clegg [Tue, 25 Mar 2014 15:27:07 +0000 (11:27 -0400)]
Fix reversed input/output in dependency explanation.
radhika chippada [Tue, 25 Mar 2014 14:55:54 +0000 (10:55 -0400)]
Update all functional tests to work with the new response format of List
Tim Pierce [Tue, 25 Mar 2014 14:32:15 +0000 (10:32 -0400)]
Added unit tests TestGetBlockOneKeepOK and TestGetBlockFail (refs #2291)
radhika chippada [Tue, 25 Mar 2014 03:20:05 +0000 (23:20 -0400)]
Update user model to return a List instead of HashList
radhika chippada [Mon, 24 Mar 2014 23:27:35 +0000 (19:27 -0400)]
some minor refactoring
radhika chippada [Mon, 24 Mar 2014 22:53:58 +0000 (18:53 -0400)]
When uuid is passed, openid_prefix can be optional
radhika chippada [Mon, 24 Mar 2014 22:10:32 +0000 (18:10 -0400)]
Merge branch 'master' into 2187-enhance-user-setup
radhika chippada [Mon, 24 Mar 2014 22:09:24 +0000 (18:09 -0400)]
More unit testing
radhika chippada [Mon, 24 Mar 2014 22:05:08 +0000 (18:05 -0400)]
Add unit test for user model
Tim Pierce [Mon, 24 Mar 2014 21:15:43 +0000 (17:15 -0400)]
Adding unit tests for GetBlock. (refs #2291)
Ward Vandewege [Mon, 24 Mar 2014 20:16:10 +0000 (16:16 -0400)]
Allow disabling of output for rake config:check via a QUIET environment
variable.
Ward Vandewege [Mon, 24 Mar 2014 19:55:29 +0000 (15:55 -0400)]
Do not print secrets in the config:check rake task.
radhika chippada [Mon, 24 Mar 2014 18:19:48 +0000 (14:19 -0400)]
Merge branch 'master' into 2187-enhance-user-setup
radhika chippada [Mon, 24 Mar 2014 18:17:39 +0000 (14:17 -0400)]
Include first link of a given type even on reruns of the setup method.
Tom Clegg [Mon, 24 Mar 2014 14:24:47 +0000 (10:24 -0400)]
Merge branch '2209-test-limit-offset'
closes #2209
Tom Clegg [Mon, 24 Mar 2014 14:22:20 +0000 (10:22 -0400)]
Merge branch '2290-user-activity'
closes #2290
radhika chippada [Mon, 24 Mar 2014 13:02:04 +0000 (09:02 -0400)]
Merge branch 'master' into 2187-enhance-user-setup
radhika chippada [Mon, 24 Mar 2014 12:58:50 +0000 (08:58 -0400)]
Raise error if both uuid and user.email are omitted in input parameters
Tom Clegg [Mon, 24 Mar 2014 06:17:42 +0000 (02:17 -0400)]
Avoid reusing per-task work directories.
Tom Clegg [Mon, 24 Mar 2014 05:59:08 +0000 (01:59 -0400)]
Indicate which outputs are marked "persistent" on pipeline provenance graphs.
Tom Clegg [Mon, 24 Mar 2014 04:55:04 +0000 (00:55 -0400)]
Make sure persistence links get added for persistent components, even
when reusing jobs that are not marked persistent or belong to other
users.
Tom Clegg [Mon, 24 Mar 2014 03:07:40 +0000 (23:07 -0400)]
Propagate output_is_persistent flag from pipeline to job.
Tom Clegg [Mon, 24 Mar 2014 03:03:32 +0000 (23:03 -0400)]
Add output_is_persistent flags to example pipeline template.
Tom Clegg [Mon, 24 Mar 2014 03:02:43 +0000 (23:02 -0400)]
Add output_is_persistent attribute to job model.
Tom Clegg [Mon, 24 Mar 2014 02:38:05 +0000 (22:38 -0400)]
Add tests for limit and offset parameters. refs #2075 refs #2209
Tom Clegg [Mon, 24 Mar 2014 02:33:40 +0000 (22:33 -0400)]
Accept ...&filters=&... in query string as "none" instead of "unparseable JSON".
radhika chippada [Mon, 24 Mar 2014 01:17:26 +0000 (21:17 -0400)]
Raise ArgumentError when required openid_prefix is not passed.
projects / arvados.git / log