Add output_is_persistent flags to example pipeline template.

diff --git a/doc/examples/pipeline_templates/gatk-exome-fq-snp.json b/doc/examples/pipeline_templates/gatk-exome-fq-snp.json
index 3668f00ab39dd78fb6ebbeba99ea99a77eac500b..f84ad3fb5274ebca31f8dca2c62ba0c5f4b4ebee 100644 (file)
--- a/doc/examples/pipeline_templates/gatk-exome-fq-snp.json
+++ b/doc/examples/pipeline_templates/gatk-exome-fq-snp.json
@@ -11,7 +11,8 @@
     ],
     "input":"d237a90bae3870b3b033aea1e99de4a9+10820+K@qr1hi"
    },
-   "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153"
+   "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
+   "output_is_persistent":false
   },
   "bwa-index":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -24,7 +25,8 @@
      "value":"8b6e2c4916133e1d859c9e812861ce13+70",
      "required":true
     }
-   }
+   },
+   "output_is_persistent":false
   },
   "bwa-aln":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -48,7 +50,8 @@
    },
    "runtime_constraints":{
     "max_tasks_per_node":1
-   }
+   },
+   "output_is_persistent":false
   },
   "picard-gatk2-prep":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -67,7 +70,8 @@
    },
    "runtime_constraints":{
     "max_tasks_per_node":1
-   }
+   },
+   "output_is_persistent":false
   },
   "GATK2-realign":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -97,7 +101,8 @@
    },
    "runtime_constraints":{
     "max_tasks_per_node":2
-   }
+   },
+   "output_is_persistent":false
   },
   "GATK2-bqsr":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -118,7 +123,8 @@
      "value":"7e0a277d6d2353678a11f56bab3b13f2+87",
      "required":true
     }
-   }
+   },
+   "output_is_persistent":false
   },
   "GATK2-merge-call":{
    "script_version":"e820bd1c6890f93ea1a84ffd5730bbf0e3d8e153",
@@ -155,7 +161,8 @@
       "200"
      ]
     }
-   }
+   },
+   "output_is_persistent":true
   }
  }
 }