arvados.git
6 years ago12479: Merge branch 'master' into 12479-wb-structured-vocabulary
Lucas Di Pentima [Mon, 8 Jan 2018 14:44:38 +0000 (11:44 -0300)]
12479: Merge branch 'master' into 12479-wb-structured-vocabulary

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoUpdate govendor bundle.
Tom Clegg [Mon, 8 Jan 2018 16:10:00 +0000 (11:10 -0500)]
Update govendor bundle.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12908-slurm-cons-res'
Tom Clegg [Mon, 8 Jan 2018 16:02:51 +0000 (11:02 -0500)]
Merge branch '12908-slurm-cons-res'

fixes #12908

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12908: Mention SelectType=select/cons_res in slurm config advice.
Tom Clegg [Mon, 8 Jan 2018 16:01:55 +0000 (11:01 -0500)]
12908: Mention SelectType=select/cons_res in slurm config advice.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12720-systemd-compat'
Tom Clegg [Mon, 8 Jan 2018 15:34:01 +0000 (10:34 -0500)]
Merge branch '12720-systemd-compat'

fixes #12720

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12720: Invoke StartLimitInterval three different ways.
Tom Clegg [Fri, 15 Dec 2017 19:08:16 +0000 (14:08 -0500)]
12720: Invoke StartLimitInterval three different ways.

Needed to convince various versions of systemd not to go into "leave
service down and wait for manual intervention" mode automatically.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdd systemd unit file for arvados-health.
Ward Vandewege [Mon, 8 Jan 2018 02:38:29 +0000 (21:38 -0500)]
Add systemd unit file for arvados-health.

refs #12260

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years ago12876: Call attention to missing python and ruby dependencies.
Tom Clegg [Mon, 8 Jan 2018 01:40:32 +0000 (20:40 -0500)]
12876: Call attention to missing python and ruby dependencies.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: Recover from more symlink confusion.
Tom Clegg [Mon, 8 Jan 2018 01:16:46 +0000 (20:16 -0500)]
12876: Recover from more symlink confusion.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: List subcommands like "arvados-client keep get" in main usage.
Tom Clegg [Mon, 8 Jan 2018 01:14:02 +0000 (20:14 -0500)]
12876: List subcommands like "arvados-client keep get" in main usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: Merge branch 'master' into 12876-arvados-client
Tom Clegg [Mon, 8 Jan 2018 01:01:05 +0000 (20:01 -0500)]
12876: Merge branch 'master' into 12876-arvados-client

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12870-fuse-binds-invalidate'
Tom Clegg [Fri, 5 Jan 2018 22:13:39 +0000 (17:13 -0500)]
Merge branch '12870-fuse-binds-invalidate'

refs #12870

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12870: Fix test
Peter Amstutz [Fri, 5 Jan 2018 20:13:25 +0000 (20:13 +0000)]
12870: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12702: Add API docs for users#update_uuid.
Tom Clegg [Fri, 5 Jan 2018 20:07:25 +0000 (15:07 -0500)]
12702: Add API docs for users#update_uuid.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12870: Don't send invalidation for inodes still referenced by kernel
Peter Amstutz [Fri, 5 Jan 2018 19:39:51 +0000 (19:39 +0000)]
12870: Don't send invalidation for inodes still referenced by kernel

When trying to flush cached inode contents, invalidating dentries
which are still referenced can race with lookups, causing the kernel to return
spurious "not found" errors.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12479: Allow the user to edit the currently accepted value on a
Lucas Di Pentima [Fri, 5 Jan 2018 19:34:35 +0000 (16:34 -0300)]
12479: Allow the user to edit the currently accepted value on a
selectize field.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Selectize tweaks to enhance usability. Removed all table
Lucas Di Pentima [Fri, 5 Jan 2018 16:19:54 +0000 (13:19 -0300)]
12479: Selectize tweaks to enhance usability. Removed all table
borders. When no vocabulary is defined, switch to simple input fields

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12702: Add /arvados/v1/users/{uuid}/update_uuid API.
Tom Clegg [Fri, 5 Jan 2018 15:38:04 +0000 (10:38 -0500)]
12702: Add /arvados/v1/users/{uuid}/update_uuid API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12479: Removed table border. Fixed indentation.
Lucas Di Pentima [Wed, 3 Jan 2018 21:38:34 +0000 (18:38 -0300)]
12479: Removed table border. Fixed indentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12749: Several fixes and enhancements:
Lucas Di Pentima [Wed, 3 Jan 2018 21:12:04 +0000 (18:12 -0300)]
12749: Several fixes and enhancements:
* Removed the "add new tag" button, a new empty row is added on demand
* Fixed widget auto-focus when adding new tag names and values
* Fixed conditional usages
* Simplified vocabulary definition format
* Renamed example vocabulary file

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Renamed 'overridable' property to 'strict'. Both toplevel
Lucas Di Pentima [Tue, 2 Jan 2018 20:19:06 +0000 (17:19 -0300)]
12479: Renamed 'overridable' property to 'strict'. Both toplevel
and type specific 'strict' properties are assumed false by default.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoDrop superfluous "node-info" prefix in node-info.txt log file.
Tom Clegg [Tue, 2 Jan 2018 19:17:16 +0000 (14:17 -0500)]
Drop superfluous "node-info" prefix in node-info.txt log file.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12479: Removed commented out test
Lucas Di Pentima [Tue, 2 Jan 2018 17:47:18 +0000 (14:47 -0300)]
12479: Removed commented out test

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Removed tags related code on wb, not needed with the new
Lucas Di Pentima [Tue, 2 Jan 2018 17:14:35 +0000 (14:14 -0300)]
12479: Removed tags related code on wb, not needed with the new
tag editor. Removed related tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Old tag editor files removal. Tests commented out.
Lucas Di Pentima [Tue, 2 Jan 2018 16:19:07 +0000 (13:19 -0300)]
12479: Old tag editor files removal. Tests commented out.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12876: Pass commands through to ruby/python programs.
Tom Clegg [Tue, 2 Jan 2018 05:47:04 +0000 (00:47 -0500)]
12876: Pass commands through to ruby/python programs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: Simplify legacy option parsing.
Tom Clegg [Wed, 27 Dec 2017 07:19:17 +0000 (02:19 -0500)]
12876: Simplify legacy option parsing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: Fix up error/usage messages.
Tom Clegg [Sun, 24 Dec 2017 19:44:36 +0000 (14:44 -0500)]
12876: Fix up error/usage messages.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: More compatibility with "arv get".
Tom Clegg [Sat, 23 Dec 2017 06:26:28 +0000 (01:26 -0500)]
12876: More compatibility with "arv get".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: Util to accept subcommand after initial args.
Tom Clegg [Sat, 23 Dec 2017 06:14:11 +0000 (01:14 -0500)]
12876: Util to accept subcommand after initial args.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12876: arvados-client get [-format=yaml] uuid
Tom Clegg [Fri, 22 Dec 2017 14:45:58 +0000 (09:45 -0500)]
12876: arvados-client get [-format=yaml] uuid

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoDependency update.
Ward Vandewege [Thu, 28 Dec 2017 21:18:29 +0000 (16:18 -0500)]
Dependency update.

refs #11876

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoUpdate docs in README
Tom Morris [Mon, 18 Dec 2017 19:16:23 +0000 (14:16 -0500)]
Update docs in README

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

6 years agoMerge branch '12755-python3-centos7'
Tom Clegg [Fri, 22 Dec 2017 19:32:24 +0000 (14:32 -0500)]
Merge branch '12755-python3-centos7'

fixes #12755

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12755: Resume packaging arvados-docker-cleaner for centos7.
Tom Clegg [Fri, 22 Dec 2017 19:31:36 +0000 (14:31 -0500)]
12755: Resume packaging arvados-docker-cleaner for centos7.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12479: Syntax error fixed.
Lucas Di Pentima [Fri, 22 Dec 2017 16:41:58 +0000 (13:41 -0300)]
12479: Syntax error fixed.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12755: Revert ce0a973 for python33 packages.
Tom Clegg [Fri, 22 Dec 2017 16:16:48 +0000 (11:16 -0500)]
12755: Revert ce0a973 for python33 packages.

They started trying to claim directories like /opt/rh/python33 and
became uninstallable as a result.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdded methods listAllCollections and listAllProjects.
Fuad Muhic [Fri, 22 Dec 2017 15:43:45 +0000 (16:43 +0100)]
Added methods listAllCollections and listAllProjects.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agorefs #12850 Merge branch '12850-docker-tag-version'
Fernando Monserrat [Fri, 22 Dec 2017 15:18:01 +0000 (12:18 -0300)]
refs #12850 Merge branch '12850-docker-tag-version'
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago12479: Avoid saving tags with name and/or value being empty string.
Lucas Di Pentima [Fri, 22 Dec 2017 15:11:59 +0000 (12:11 -0300)]
12479: Avoid saving tags with name and/or value being empty string.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoAdded code to notify user when API is unable to locate webDAV server.
Fuad Muhic [Fri, 22 Dec 2017 13:01:05 +0000 (14:01 +0100)]
Added code to notify user when API is unable to locate webDAV server.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12479: Add placeholder messages on selectize boxes. Filter keys/values
Lucas Di Pentima [Fri, 22 Dec 2017 12:53:16 +0000 (09:53 -0300)]
12479: Add placeholder messages on selectize boxes. Filter keys/values
when being empty strings (ie: when adding new tags).
Fixed bug that made the Save button behave incorrectly.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoSplit Collectin's add method to add and create methods.
Fuad Muhic [Fri, 22 Dec 2017 11:32:39 +0000 (12:32 +0100)]
Split Collectin's add method to add and create methods.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoCollections getFileContent method renamed to getFileListing.
Fuad Muhic [Fri, 22 Dec 2017 10:44:14 +0000 (11:44 +0100)]
Collections getFileContent method renamed to getFileListing.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoMethods listCollections and listProjects now work properly
Fuad Muhic [Fri, 22 Dec 2017 10:12:39 +0000 (11:12 +0100)]
Methods listCollections and listProjects now work properly
when called without parameters. Removed old comments.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoNote DCO requirement.
Tom Clegg [Thu, 21 Dec 2017 18:48:54 +0000 (13:48 -0500)]
Note DCO requirement.

Fix some typos.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoFix copyright header, and copyright header checker exit code.
Tom Clegg [Thu, 21 Dec 2017 18:25:18 +0000 (13:25 -0500)]
Fix copyright header, and copyright header checker exit code.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12844-webdav-move-into-self'
Tom Clegg [Thu, 21 Dec 2017 17:41:19 +0000 (12:41 -0500)]
Merge branch '12844-webdav-move-into-self'

fixes #12844

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch 'patch-2' of https://github.com/jrandall/arvados
Tom Clegg [Thu, 21 Dec 2017 16:53:26 +0000 (11:53 -0500)]
Merge branch 'patch-2' of https://github.com/jrandall/arvados

fixes #11621

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agofix bwa-mem.cwl docker repo
Joshua C. Randall [Thu, 21 Dec 2017 14:54:13 +0000 (14:54 +0000)]
fix bwa-mem.cwl docker repo

Change from missing `biodckr/bwa` repo to minimal bwa docker image `lh3lh3/bwa`
The new docker image has `bwa` set as entrypoint, so also change `baseCommand` from `[bwa, mem]` to `[mem]`
Fixes 11621

Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>

6 years ago12844: Refuse to unreference a directory by moving it into itself.
Tom Clegg [Thu, 21 Dec 2017 15:21:04 +0000 (10:21 -0500)]
12844: Refuse to unreference a directory by moving it into itself.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago#12850 trim whitespaces for lint
Fernando Monserrat [Thu, 21 Dec 2017 15:14:35 +0000 (12:14 -0300)]
#12850 trim whitespaces for lint
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years agoMade updating groups and collections less verbose.
Fuad Muhic [Thu, 21 Dec 2017 14:39:10 +0000 (15:39 +0100)]
Made updating groups and collections less verbose.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoMerge branch '11876-r-sdk' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Thu, 21 Dec 2017 13:09:47 +0000 (14:09 +0100)]
Merge branch '11876-r-sdk' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoFixed some bugs and improved error handling.
Fuad Muhic [Thu, 21 Dec 2017 12:57:51 +0000 (13:57 +0100)]
Fixed some bugs and improved error handling.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoExpand the README a bit, fix some syntax errors, add instructions for
Ward Vandewege [Thu, 21 Dec 2017 02:50:15 +0000 (21:50 -0500)]
Expand the README a bit, fix some syntax errors, add instructions for
building/installing from source.

refs #11876

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoFix typo
Ward Vandewege [Thu, 21 Dec 2017 02:22:37 +0000 (21:22 -0500)]
Fix typo

refs #11876

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoMerge branch 'master' into 12479-wb-structured-vocabulary
Lucas Di Pentima [Wed, 20 Dec 2017 22:24:45 +0000 (19:24 -0300)]
Merge branch 'master' into 12479-wb-structured-vocabulary

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago#12850 add tag as input for docker tag
Fernando Monserrat [Wed, 20 Dec 2017 20:25:23 +0000 (17:25 -0300)]
#12850 add tag as input for docker tag
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

6 years ago12479: When requesting the collection, only ask the api server for the
Lucas Di Pentima [Wed, 20 Dec 2017 19:13:14 +0000 (16:13 -0300)]
12479: When requesting the collection, only ask the api server for the
properties.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Save button changes state when having changes to save and after
Lucas Di Pentima [Wed, 20 Dec 2017 18:38:04 +0000 (15:38 -0300)]
12479: Save button changes state when having changes to save and after
saving. When no tags, show a proper message.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Replacing isDirty flag with dirty stream
Lucas Di Pentima [Wed, 20 Dec 2017 16:13:14 +0000 (13:13 -0300)]
12479: Replacing isDirty flag with dirty stream

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: WIP making the save objject show the save state
Lucas Di Pentima [Wed, 20 Dec 2017 16:00:21 +0000 (13:00 -0300)]
12479: WIP making the save objject show the save state

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoAdded a fix to project create and project update.
Fuad Muhic [Wed, 20 Dec 2017 10:25:47 +0000 (11:25 +0100)]
Added a fix to project create and project update.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoMerge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Wed, 20 Dec 2017 09:25:34 +0000 (10:25 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoUsers are no longer able to delete root folder.
Fuad Muhic [Wed, 20 Dec 2017 09:24:27 +0000 (10:24 +0100)]
Users are no longer able to delete root folder.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12479: Properties saving working. Remove tag button styling.
Lucas Di Pentima [Tue, 19 Dec 2017 22:04:10 +0000 (19:04 -0300)]
12479: Properties saving working. Remove tag button styling.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12848-python-versions' 1.1.2
Tom Clegg [Tue, 19 Dec 2017 21:46:29 +0000 (16:46 -0500)]
Merge branch '12848-python-versions'

refs #12848

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12848: Fix python builder ignoring --build-version.
Tom Clegg [Tue, 19 Dec 2017 21:41:52 +0000 (16:41 -0500)]
12848: Fix python builder ignoring --build-version.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12479: Remove tag button working.
Lucas Di Pentima [Tue, 19 Dec 2017 18:45:30 +0000 (15:45 -0300)]
12479: Remove tag button working.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Refactoring to simplify the code.
Lucas Di Pentima [Tue, 19 Dec 2017 18:16:30 +0000 (15:16 -0300)]
12479: Refactoring to simplify the code.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoUpdated README file
Fuad Muhic [Tue, 19 Dec 2017 17:17:42 +0000 (18:17 +0100)]
Updated README file

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoMerge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Tue, 19 Dec 2017 17:03:41 +0000 (18:03 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoAdded function to work with projects.
Fuad Muhic [Tue, 19 Dec 2017 17:02:45 +0000 (18:02 +0100)]
Added function to work with projects.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12755: Stop building arvados-docker-cleaner for centos7.
Tom Clegg [Tue, 19 Dec 2017 16:19:00 +0000 (11:19 -0500)]
12755: Stop building arvados-docker-cleaner for centos7.

(until we make the package installable again)

refs #12755

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Tue, 19 Dec 2017 14:36:46 +0000 (15:36 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoAdded feature to move File-like object inside collection.
Fuad Muhic [Tue, 19 Dec 2017 14:34:44 +0000 (15:34 +0100)]
Added feature to move File-like object inside collection.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12377: Update workbench test breaking since 484246ac0.
Tom Clegg [Tue, 19 Dec 2017 09:14:55 +0000 (04:14 -0500)]
12377: Update workbench test breaking since 484246ac0.

refs #12377

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12715-slow-propfind'
Tom Clegg [Tue, 19 Dec 2017 03:21:39 +0000 (22:21 -0500)]
Merge branch '12715-slow-propfind'

fixes #12715

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12479: Add Selectize via npm package
Lucas Di Pentima [Mon, 18 Dec 2017 22:12:04 +0000 (19:12 -0300)]
12479: Add Selectize via npm package

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12822-keepproxy-token-scope'
Tom Clegg [Mon, 18 Dec 2017 22:04:36 +0000 (17:04 -0500)]
Merge branch '12822-keepproxy-token-scope'

refs #12822

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12377-workbench-composer-link' refs #12377
Peter Amstutz [Mon, 18 Dec 2017 20:36:10 +0000 (15:36 -0500)]
Merge branch '12377-workbench-composer-link' refs #12377

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago12479: Passing UUID & controller name data from data-mount-mithril element
Lucas Di Pentima [Mon, 18 Dec 2017 19:42:19 +0000 (16:42 -0300)]
12479: Passing UUID & controller name data from data-mount-mithril element
instead of parsing URL.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '12821-sbatch-script-race'
Tom Clegg [Mon, 18 Dec 2017 17:52:09 +0000 (12:52 -0500)]
Merge branch '12821-sbatch-script-race'

refs #12821

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoPrepare for packaging.
Ward Vandewege [Mon, 18 Dec 2017 16:06:09 +0000 (11:06 -0500)]
Prepare for packaging.

refs #12837

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoMerge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Mon, 18 Dec 2017 15:39:41 +0000 (16:39 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoMade Subcollection and ArvadosFile more flexible.
Fuad Muhic [Mon, 18 Dec 2017 15:37:44 +0000 (16:37 +0100)]
Made Subcollection and ArvadosFile more flexible.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12479: Assign default vocabulary on model instantiation
Lucas Di Pentima [Mon, 18 Dec 2017 13:57:34 +0000 (10:57 -0300)]
12479: Assign default vocabulary on model instantiation

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: Get remote vocabulary definition, use a fallback is it doesn't exist.
Lucas Di Pentima [Mon, 18 Dec 2017 13:06:03 +0000 (10:06 -0300)]
12479: Get remote vocabulary definition, use a fallback is it doesn't exist.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12479: New tag editor for structured vocabulary. There are pending
Lucas Di Pentima [Mon, 18 Dec 2017 11:10:21 +0000 (08:10 -0300)]
12479: New tag editor for structured vocabulary. There are pending
issues to be solved.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago12821: Fix race in concurrent calls to submit().
Tom Clegg [Sat, 16 Dec 2017 00:13:24 +0000 (19:13 -0500)]
12821: Fix race in concurrent calls to submit().

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '12721-build-test-version'
Tom Clegg [Fri, 15 Dec 2017 20:21:26 +0000 (15:21 -0500)]
Merge branch '12721-build-test-version'

refs #12721

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12721: Add run-build-test-packages-one-target.sh --build-version arg
Tom Clegg [Fri, 15 Dec 2017 17:51:07 +0000 (12:51 -0500)]
12721: Add run-build-test-packages-one-target.sh --build-version arg

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12715: Rename flag !reading => alwaysReadEOF.
Tom Clegg [Fri, 15 Dec 2017 15:14:13 +0000 (10:14 -0500)]
12715: Rename flag !reading => alwaysReadEOF.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdd composer_url to arvbox workbench config refs #12377
Peter Amstutz [Fri, 15 Dec 2017 14:25:32 +0000 (09:25 -0500)]
Add composer_url to arvbox workbench config refs #12377

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Fuad Muhic [Fri, 15 Dec 2017 12:01:48 +0000 (13:01 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years agoAdded feature to delete file from a collection.
Fuad Muhic [Fri, 15 Dec 2017 12:00:41 +0000 (13:00 +0100)]
Added feature to delete file from a collection.

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

6 years ago12715: Fix slow PROPFIND by avoiding content probing.
Tom Clegg [Fri, 15 Dec 2017 03:25:38 +0000 (22:25 -0500)]
12715: Fix slow PROPFIND by avoiding content probing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12822: Allow reading from keepproxy with collection sharing tokens.
Tom Clegg [Fri, 15 Dec 2017 03:13:17 +0000 (22:13 -0500)]
12822: Allow reading from keepproxy with collection sharing tokens.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago12377: Add link to composer on workbench
Peter Amstutz [Thu, 14 Dec 2017 23:05:23 +0000 (18:05 -0500)]
12377: Add link to composer on workbench

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>