Fuad Muhic [Fri, 26 Jan 2018 15:00:59 +0000 (16:00 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Fri, 26 Jan 2018 14:59:47 +0000 (15:59 +0100)]
getFileListing now returns sorted list
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Thu, 25 Jan 2018 19:27:38 +0000 (14:27 -0500)]
Fix missing files needed by arvados-tests.sh refs #12935
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Thu, 25 Jan 2018 14:15:04 +0000 (15:15 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Thu, 25 Jan 2018 14:12:42 +0000 (15:12 +0100)]
ArvadosFile's connection method now returns curl connection instead of
textConnection when called with 'r' parameter
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 24 Jan 2018 15:49:21 +0000 (10:49 -0500)]
Merge branch '12891-log-on-cancel'
refs #12891
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Wed, 24 Jan 2018 15:19:01 +0000 (16:19 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 24 Jan 2018 15:17:36 +0000 (16:17 +0100)]
Added unit tests for HttpRequest class.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Tue, 23 Jan 2018 20:08:08 +0000 (15:08 -0500)]
12891: Don't wait for WaitContainer to receive loggingDone.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 23 Jan 2018 20:05:22 +0000 (15:05 -0500)]
12891: Fix some test races.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 23 Jan 2018 19:39:26 +0000 (14:39 -0500)]
12891: Simplify "arv-mount exits before container ends" detection.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 23 Jan 2018 17:40:14 +0000 (12:40 -0500)]
Merge branch '12990-fuse-shared' refs #12990
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 23 Jan 2018 16:33:58 +0000 (11:33 -0500)]
12990: Re-query project roots in order to get full record
Makes the query of all projects lighter.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Tue, 23 Jan 2018 16:29:08 +0000 (17:29 +0100)]
Removed plus sign hack from HttpRequests createFiltersQuery method
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Tue, 23 Jan 2018 16:16:50 +0000 (17:16 +0100)]
Fixed ArvadosFile/Subcollection move bug and improved http query
generation logic.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Tue, 23 Jan 2018 15:51:47 +0000 (10:51 -0500)]
12990: Add update lock to shared directory update.
Also limit fields returned using select.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Tue, 23 Jan 2018 11:38:18 +0000 (12:38 +0100)]
Added additional unit tests to Arvados class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Tue, 23 Jan 2018 09:45:28 +0000 (10:45 +0100)]
Factored out HttpRequest and HttpParser classes from Arvados class to
RESTService class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Mon, 22 Jan 2018 15:57:18 +0000 (10:57 -0500)]
12891: Use docker "rm -f" instead of "stop" to cancel container.
"Stop" sends SIGTERM and then (after a timeout) SIGKILL to the main
process in the container. If the contained process catches SIGTERM,
the outcome depends on how much cleanup it manages to do in the
timeout period. We prefer a more predictable SIGKILL outcome.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 18 Jan 2018 21:41:39 +0000 (16:41 -0500)]
12891: Avoid flapping finalState after cancel.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 18 Jan 2018 21:41:14 +0000 (16:41 -0500)]
12891: Fix use of magic string.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 18 Jan 2018 21:40:59 +0000 (16:40 -0500)]
12891: Don't give up after trying once to stop the docker container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 18 Jan 2018 21:39:16 +0000 (16:39 -0500)]
12891: Don't use SIGKILL when telling crunch-run to cancel.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 18 Jan 2018 21:28:39 +0000 (16:28 -0500)]
12891: Refactor slurm commands.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Fri, 19 Jan 2018 16:40:57 +0000 (17:40 +0100)]
Updated README to reflect current project state
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Fri, 19 Jan 2018 15:24:30 +0000 (16:24 +0100)]
Added unit tests for RESTService and HttpParser classes
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Thu, 18 Jan 2018 14:31:02 +0000 (15:31 +0100)]
Added unit tests for RESTService class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 17 Jan 2018 22:21:18 +0000 (17:21 -0500)]
12891: Remove superfluous ThinDockerClientProxy wrapper.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Wed, 17 Jan 2018 16:22:31 +0000 (17:22 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 17 Jan 2018 16:21:49 +0000 (17:21 +0100)]
Added unit test for ArvadosFile and Collection classes
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 17 Jan 2018 16:20:49 +0000 (17:20 +0100)]
Merge branch '11876-r-sdk' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 17 Jan 2018 15:31:04 +0000 (10:31 -0500)]
Fix wrong cluster label on search page when authenticated remotely.
Add uuid prefix to discovery doc.
refs #11453
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 17 Jan 2018 04:32:04 +0000 (23:32 -0500)]
Merge branch '12934-cwl-conformance' refs #12934
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 16 Jan 2018 23:21:29 +0000 (18:21 -0500)]
12934: Bump cwltool version for packing fix.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 21:36:27 +0000 (18:36 -0300)]
Merge branch '12479-wb-structured-vocabulary'
Closes #12479
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 21:21:14 +0000 (18:21 -0300)]
12479: Clear vocabulary.json cache every 5 minutes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 21:07:22 +0000 (18:07 -0300)]
12479: Updated example vocabulary. Attempt to show all the items
on a given listing, using a scrolled list if necessary.
Also disabled sorting feature on awesomplete as it uses a default
sorting not suitable for our use case.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 16 Jan 2018 20:51:22 +0000 (15:51 -0500)]
Merge branch '12705-token-cache'
closes #12705
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 20:45:46 +0000 (17:45 -0300)]
12479: Accept tags with empty values
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 20:30:50 +0000 (17:30 -0300)]
12479: Merge branch '12479-wb-structured-vocabulary' of git.curoverse.com:arvados into 12479-wb-structured-vocabulary
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 16 Jan 2018 20:15:43 +0000 (15:15 -0500)]
12479: Set dirty flag on change even when clearing input.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 19:36:19 +0000 (16:36 -0300)]
12479: Merge branch '12479-wb-structured-vocabulary' of git.curoverse.com:arvados into 12479-wb-structured-vocabulary
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 16 Jan 2018 19:32:33 +0000 (14:32 -0500)]
12479: Fix per-tag strict mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 16 Jan 2018 19:18:44 +0000 (16:18 -0300)]
12479: Avoid tags tab reloading after saving.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 16 Jan 2018 19:18:40 +0000 (14:18 -0500)]
12479: Open autocomplete when focusing an empty field.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 16 Jan 2018 18:19:59 +0000 (13:19 -0500)]
12479: Use onupdate + stable vnode keys, let focus handle itself.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Tue, 16 Jan 2018 13:03:41 +0000 (14:03 +0100)]
Added unit tests for Subcollection class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Tue, 16 Jan 2018 03:22:39 +0000 (22:22 -0500)]
12934: Rewrite file paths in pack instead of using "overrides"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 15 Jan 2018 22:07:25 +0000 (17:07 -0500)]
12705: Note 5 minute cache effect during user migration.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 15 Jan 2018 21:55:56 +0000 (16:55 -0500)]
12705: Update authorized user when refreshing token cache.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 15 Jan 2018 21:34:19 +0000 (16:34 -0500)]
12934: Fix gofmt
Also fix build-dev-docker-jobs-image.sh to use correct tag.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 15 Jan 2018 21:16:23 +0000 (18:16 -0300)]
12479: Re-added 'key' to the tag key div, because the lack of it
produces an odd behavior when removing some existing tag using
the trash button and then trying to add a new tag.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 15 Jan 2018 20:46:31 +0000 (17:46 -0300)]
12479: Replaced selectize widget with awesomplete to solve some
issues when navigating fields with TAB key.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 15 Jan 2018 20:22:49 +0000 (15:22 -0500)]
12934: Fix unit tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Morris [Fri, 12 Jan 2018 22:09:32 +0000 (17:09 -0500)]
Bump version to 0.0.2
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Peter Amstutz [Fri, 12 Jan 2018 21:03:22 +0000 (16:03 -0500)]
12934: Remove debug log
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Jan 2018 15:53:57 +0000 (10:53 -0500)]
12934: Add .keep via manifest manipulation instead of creating real files
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Fri, 12 Jan 2018 15:25:51 +0000 (16:25 +0100)]
Added two utility functions and created unit test for them.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Fri, 12 Jan 2018 15:19:45 +0000 (10:19 -0500)]
Merge branch '12705-user-migrate-docs'
closes #12705
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Fri, 12 Jan 2018 14:52:55 +0000 (15:52 +0100)]
Added unit tests for CollectionTree class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Fri, 12 Jan 2018 13:09:51 +0000 (14:09 +0100)]
Reworked functionality for removing content from collection.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Fri, 12 Jan 2018 11:06:04 +0000 (12:06 +0100)]
collection$get("file") and collection$get("./file") now return the same file
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Thu, 11 Jan 2018 22:40:39 +0000 (17:40 -0500)]
12934: Fix version reporting
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Jan 2018 16:58:53 +0000 (11:58 -0500)]
12934: crunch-run creates .keep file in empty directories
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Jan 2018 15:42:20 +0000 (10:42 -0500)]
12934: Sort glob results
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Jan 2018 02:49:06 +0000 (21:49 -0500)]
12934: Bump cwltool and schema salad
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Jan 2018 22:02:12 +0000 (17:02 -0500)]
11876: Add ArvadosFile$connection and $flush
Convenience functions for working with standard R functions like
read.table() and write.table().
Update documentation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 11 Jan 2018 19:53:14 +0000 (14:53 -0500)]
12705: Add "change account owner" and "merge remote account" pages.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 11 Jan 2018 19:45:43 +0000 (14:45 -0500)]
11876: Fix bug using Arvados$new with no parameters
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 11 Jan 2018 19:04:04 +0000 (14:04 -0500)]
Merge branch '12933-log-node-properties'
refs #12933
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 11 Jan 2018 18:18:02 +0000 (13:18 -0500)]
12933: Add missing params arg, remove outdated comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 11 Jan 2018 16:50:13 +0000 (11:50 -0500)]
12933: Merge branch 'master' into 12933-log-node-properties
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Thu, 11 Jan 2018 15:15:09 +0000 (16:15 +0100)]
Added more unit tests to Arvados class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Wed, 10 Jan 2018 15:37:14 +0000 (10:37 -0500)]
12933: Log node info in node.json, similar to container.json.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Wed, 10 Jan 2018 17:06:30 +0000 (18:06 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Wed, 10 Jan 2018 17:05:05 +0000 (18:05 +0100)]
Added a few unit test for Arvados class
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Wed, 10 Jan 2018 15:23:10 +0000 (10:23 -0500)]
Merge branch '12940-arvbox-runit' closes #12940
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 22:49:07 +0000 (17:49 -0500)]
12940: Fix fallback when overlay2 isn't available for docker-in-docker
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 22:02:49 +0000 (17:02 -0500)]
12940: Fix bundler issues
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 20:39:21 +0000 (15:39 -0500)]
12940: Use runit directly instead of runsvinit
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 10 Jan 2018 07:48:35 +0000 (02:48 -0500)]
12933: Include node properties in crunch2 logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 10 Jan 2018 07:02:11 +0000 (02:02 -0500)]
Merge branch 'govendor'
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 9 Jan 2018 23:15:40 +0000 (18:15 -0500)]
Update tests to reflect gomux change.
If an unroutable request would have matched a route if the method had
been different, mux now responds 405 Method Not Allowed instead of
using NotFoundHandler.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 20:57:03 +0000 (15:57 -0500)]
Merge branch '12921-run-in-single-hints' closes #12921
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 9 Jan 2018 16:57:11 +0000 (11:57 -0500)]
Update go dependencies. Add check for missing dependencies.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fuad Muhic [Tue, 9 Jan 2018 16:21:49 +0000 (17:21 +0100)]
Merge branch 'master' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Tue, 9 Jan 2018 16:21:18 +0000 (17:21 +0100)]
Added support for unit testing.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Tue, 9 Jan 2018 15:55:25 +0000 (10:55 -0500)]
Fix duplicated auth_uuid in container test fixtures.
Fixes flaky test.
No issue #.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 9 Jan 2018 15:54:50 +0000 (10:54 -0500)]
Merge branch '12702-migrate-user'
closes #12702
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 15:20:14 +0000 (10:20 -0500)]
12921: Fix outputTTL to apply to RunInSingleContainer
Arvados extensions should not propagate to workflow inside the
container (which is run using cwltool), but do need to propagate to
RunInSingleContainer CommandLineTool.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 14:50:17 +0000 (09:50 -0500)]
Merge branch '12913-secondary-mounts' refs #12913
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Jan 2018 14:31:39 +0000 (09:31 -0500)]
12913: Add integration test for fix
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Tue, 9 Jan 2018 14:31:19 +0000 (15:31 +0100)]
Merge branch '11876-r-sdk' of git.curoverse.com:arvados into 11876-r-sdk
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Tue, 9 Jan 2018 14:28:42 +0000 (15:28 +0100)]
Collection classes no longer use each others private state.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Mon, 8 Jan 2018 21:39:15 +0000 (16:39 -0500)]
12913: Apply secondaryFiles to inputs to RunInSingleContainer
Fixes bug where mounts mismatch cwl.input.yml due to discovering
secondaryFiles during workflow execution.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 8 Jan 2018 20:53:28 +0000 (15:53 -0500)]
12876: Update govendor bundle.
refs #12876
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Jan 2018 20:52:50 +0000 (17:52 -0300)]
12479: Removed plugin. Fixed onFocus() behavior on strict listings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 8 Jan 2018 20:51:08 +0000 (15:51 -0500)]
Merge branch '12876-arvados-client'
refs #12876
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 8 Jan 2018 18:30:55 +0000 (13:30 -0500)]
12702: Disallow updating sys/anon UUIDs. Test updating current user.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Jan 2018 18:05:53 +0000 (15:05 -0300)]
12479: UX enhancements:
* When focusing a "strict" select list, open the dropdown list
* Placeholder messages customized for different strict/no-strict cases
* Added plugin to show a "no results found" message when the user
types something that doesn't match with the available options on a
strict list.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
projects / arvados.git / log