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9639: Delete all cached discovery docs, but do not delete the cache directory.
[arvados.git]
/
sdk
/
cwl
/
2016-07-19
Tom Clegg
Merge branch '9613-user-profile-string-keys'
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commitdiff
2016-07-18
Lucas Di Pentima
Merge branch '9438-http-default-timeout'
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commitdiff
2016-07-17
Nico Cesar
Merge branch '9614-cwl-no-websockets'
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commitdiff
2016-07-16
Peter Amstutz
9614: Don't use websockets for event notification until...
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commitdiff
2016-07-15
Peter Amstutz
Merge branch 'master' into 9369-arv-cwl-docs
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commitdiff
2016-07-15
Peter Amstutz
Merge branch '9570-cwl-runner-fixes' closes #9570 ...
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commitdiff
2016-07-15
Peter Amstutz
9570: Raise exception on workflow failure.
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commitdiff
2016-07-15
Peter Amstutz
9570: Use special path mapper for staging files to...
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commitdiff
2016-07-15
Peter Amstutz
9570: Call normalizeFilesDirs to make sure basename...
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commitdiff
2016-07-15
Peter Amstutz
9570: Adjust Directory objects, too.
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commitdiff
2016-07-15
Peter Amstutz
9570: Remove spurious print statement.
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commitdiff
2016-07-15
Peter Amstutz
9570: Bump cwltool dependency
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commitdiff
2016-07-15
Peter Amstutz
9570: Update cwl-runner for latest cwltool. Ensure...
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commitdiff
2016-07-13
Nico Cesar
Merge branch '9459-test_with_arvbox_tweaks'
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commitdiff
2016-07-13
Nico Cesar
9459: added test_in_arvbox.sh and arvbox the docker...
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commitdiff
2016-07-13
Tom Clegg
Merge branch '9567-keep-web-session-test'
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commitdiff
2016-07-13
Peter Amstutz
Fix tests. refs #9570
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commitdiff
2016-07-13
Peter Amstutz
Merge branch '9486-retry-instance-limit-exceeded' close...
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commitdiff
2016-07-13
Peter Amstutz
Merge branch '9570-cwl-v1.0' closes #9570
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commitdiff
2016-07-13
Peter Amstutz
9570: Set docker_outdir consistently.
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commitdiff
2016-07-13
Peter Amstutz
9570: Update version pin and add reminder to setup...
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commitdiff
2016-07-13
Peter Amstutz
9570: Fix secondaryFile staging to ensure that all...
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commitdiff
2016-07-12
Peter Amstutz
9570: Fix for Pathmapper API change. Most tests pass...
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commitdiff
2016-07-12
Peter Amstutz
9570: Support Directory and file literal features....
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commitdiff
2016-07-11
Peter Amstutz
9570: Pass tests except related to directory features
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commitdiff
2016-07-11
Peter Amstutz
9570: CWL v1.0 support wip
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commitdiff
2016-07-07
Tom Clegg
9567: Avoid ruamel.yaml >0.11.11. refs #9567
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commitdiff
2016-07-07
Tom Clegg
Revert "Bump cwltool dependency. Previously pinned...
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commitdiff
2016-07-07
Tom Clegg
Bump cwltool dependency. Previously pinned version...
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commitdiff
2016-06-30
Peter Amstutz
Update arvados-cwl-runner cwltool pin to get ruamel...
tree
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commitdiff
2016-06-29
Peter Amstutz
Merge branch '9511-cwl-type-checking' closes #9511
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commitdiff
2016-06-29
Peter Amstutz
9511: Bump cwltool dependency to get bugfix (81ff56f239...
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commitdiff
2016-06-28
Peter Amstutz
Merge branch '9442-cwl-runtime-outdir' closes #9442
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commitdiff
2016-06-28
Peter Amstutz
9442: Incorporate check for correct $(runtime.outdir...
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commitdiff
2016-06-28
Peter Amstutz
9442: Fix runtime.outdir for containers.
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commitdiff
2016-06-28
Peter Amstutz
9442: Override kwargs["outdir"] so that $(runtime.outdi...
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commitdiff
2016-06-27
Lucas Di Pentima
Merge branch '9446-refactor-keep-parallel-write-strategy'
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commitdiff
2016-06-22
Peter Amstutz
Merge branch 'origin-8442-cwl-crunch2' closes #8442
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commitdiff
2016-06-22
Peter Amstutz
Merge branch 'master' into origin-8442-cwl-crunch2
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commitdiff
2016-06-22
Peter Amstutz
8442: Code cleanup. Remove dead code. Update comments.
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commitdiff
2016-06-21
Peter Amstutz
8442: Fix error reporting on missing Docker image
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commitdiff
2016-06-21
Peter Amstutz
8442: Make work_api parameter to ArvCwlRunner construct...
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commitdiff
2016-06-21
Peter Amstutz
8442: Bugfixes from end-to-end testing.
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commitdiff
2016-06-21
Peter Amstutz
8442: Fix tests. Update comments. Rename jobs ->...
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commitdiff
2016-06-20
Peter Amstutz
8442: Rename --crunch1 and --crunch2 options to --api...
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commitdiff
2016-06-15
Peter Amstutz
8442: Generatefiles encode utf-8
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commitdiff
2016-06-15
Peter Amstutz
8442: Submit CommandLineTool containers directly withou...
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commitdiff
2016-06-15
Peter Amstutz
8442: Tweak internal handling of keep: paths, examine...
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commitdiff
2016-06-15
Peter Amstutz
8442: more import fixups, import workflow file correctly.
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commitdiff
2016-06-15
Peter Amstutz
8442: import fixups
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commitdiff
2016-06-15
Peter Amstutz
8442: Debugging container --submit with crunch2
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commitdiff
2016-06-15
Peter Amstutz
8442: Adding --submit support with --crunch2. General...
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commitdiff
2016-06-15
Peter Amstutz
8442: Fix message
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commitdiff
2016-06-15
Peter Amstutz
8442: raise UnsupportedRequirement for unsupported...
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commitdiff
2016-06-15
Peter Amstutz
8442: Setting up mount points works. Capturing output...
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commitdiff
2016-06-15
Peter Amstutz
8442: Return PDH for Docker container. Working on...
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commitdiff
2016-06-15
Peter Amstutz
8442: Submit containers Work in progess.
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commitdiff
2016-06-15
Peter Amstutz
8442: Add --crunch1/--crunch2 switch
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commitdiff
2016-06-15
Peter Amstutz
8442: CWL create crunch2 containers WIP
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commitdiff
2016-06-08
radhika
Merge branch 'master' into 8650-container-work-unit
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commitdiff
2016-06-08
radhika
Merge branch 'master' into wtsi-hgi-8087-arv-cli-reques...
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commitdiff
2016-06-08
radhika
Merge branch '8087-arv-cli-request-body-from-file'...
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commitdiff
2016-06-07
radhika
Merge branch 'master' into 9318-dashboard-uses-work...
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commitdiff
2016-06-07
radhika
closes #8876
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commitdiff
2016-06-07
Peter Amstutz
Bugfix submitting cwl jobs with arvados-cwl-runner...
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commitdiff
2016-06-07
Peter Amstutz
Merge branch '9275-cwl-runner-creates-jobs' closes...
tree
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commitdiff
2016-06-07
Peter Amstutz
9275: Initial pipeline/job component update from response
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commitdiff
2016-06-07
radhika
9275: Update the update_pipeline_component method to...
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commitdiff
2016-06-06
radhika
9275: add record to cwl_runner_job as components
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commitdiff
2016-06-06
Peter Amstutz
Merge branch 'master' into 9187-crunchv2-dispatching
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commitdiff
2016-06-03
radhika
9275: create pipeline_instance in submit mode as well...
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commitdiff
2016-05-31
radhika
Merge branch 'master' into 8876-work-unit
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commitdiff
2016-05-31
Brett Smith
9316: Include documentation in CWL SDK.
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commitdiff
2016-05-20
Tom Clegg
Merge branch 'wtsi-hgi-9231-rename-redunancy-to-replica...
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commitdiff
2016-05-19
Peter Amstutz
Merge branch '8653-cwl-runner-handle-files' closes...
tree
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commitdiff
2016-05-19
Peter Amstutz
8653: Fix tests.
tree
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commitdiff
2016-05-19
Peter Amstutz
8653: Use load_tool.fetch_document() instead of Loader...
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commitdiff
2016-05-19
Peter Amstutz
8653: add cwlVersion so file validate correctly.
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commitdiff
2016-05-19
Peter Amstutz
8653: Fix pathmapper API
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commitdiff
2016-05-19
Peter Amstutz
8653: Set basedir for CollectionFsAccess
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commitdiff
2016-05-18
Peter Amstutz
8653: cwl-runner crunch script rewrites keep file paths...
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commitdiff
2016-05-03
Peter Amstutz
Merge branch '8998-optimize-decode-www-form-component...
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commitdiff
2016-05-02
Tom Clegg
Merge branch '8653-cwl-to-template'
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commitdiff
2016-05-02
Tom Clegg
8653: Add arvados-cwl-runner --create-template flag
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commitdiff
2016-05-02
Tom Clegg
8653: DRY testing code.
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commitdiff
2016-05-02
Tom Clegg
8653: Turn off debug messages / verbose logging in...
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commitdiff
2016-05-02
Tom Clegg
8653: Fix whitespace.
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commitdiff
2016-04-26
Peter Amstutz
Merge branch '8931-event-thread-catch-exceptions' close...
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commitdiff
2016-04-21
radhika
closes #8936
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commitdiff
2016-04-21
Peter Amstutz
Pin bump cwltool dependency and pin version so it doesn...
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commitdiff
2016-04-12
radhika
Merge branch 'master' into 8724-keep-block-check-script
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commitdiff
2016-04-11
Peter Amstutz
Add --help to test_with_arvbox.sh, no issue #
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commitdiff
2016-04-10
Peter Amstutz
Merge branch '8799-make-drained-nodes-idle' closes...
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commitdiff
2016-04-07
radhika
Merge branch 'master' into 7658-websockets-reconnect...
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commitdiff
2016-04-06
Brett Smith
Merge branch '8879-cwl-runner-job-owner-wip'
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commitdiff
2016-04-06
Brett Smith
8879: Clean indentation in CWL SDK tests.
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commitdiff
2016-04-06
Brett Smith
8879: cwl-runner --submit respects --project-uuid.
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commitdiff
2016-04-01
Peter Amstutz
Merge branch '8816-compute-node-update-exception' close...
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commitdiff
2016-04-01
Brett Smith
Merge branch '8782-reapchildren-after-signal-wip'
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commitdiff
2016-04-01
Peter Amstutz
Merge branch '8857-cwl-job-reuse' closes #8857
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