Merge branch '9684-workflows'
[arvados.git] / sdk / cwl / arvados_cwl /
2016-08-19 Tom CleggMerge branch '9684-workflows'
2016-08-18 Lucas Di PentimaMerge branch 'master' into 9333-api-server-invalid-sql
2016-08-18 radhikacloses #9684
2016-08-17 Lucas Di PentimaMerge branch '9333-api-server-invalid-sql'
2016-08-15 radhikacloses #9709
2016-08-11 Peter AmstutzFix failing tests. refs #9776
2016-08-11 Peter AmstutzMerge branch '9776-cwl-HOME-TMPDIR' closes #9776
2016-08-11 Peter Amstutz9776: Ensure that $HOME and $TMPDIR are set correctly.
2016-08-11 Peter AmstutzMerge branch '9615-cwl-writable-unsupported' refs ...
2016-08-11 Peter Amstutz9615: Add check_writable to check for "writable" field...
2016-08-11 Peter AmstutzMerge branch '9751-cwl-keep-dir' closes #9751
2016-08-11 Peter Amstutz9552: import compute_checksums from cwltool.
2016-08-11 Peter Amstutz9751: Fix handling local Directories
2016-08-11 Peter Amstutz9751: Fix unit tests. Rename dir6.cwl to keep-dir...
2016-08-11 Peter Amstutz9751: Override realpath in CollectionFsAccess
2016-08-11 Peter Amstutz9751: Fix direct to keep directory references.
2016-08-11 Peter Amstutz9751: Provide make_fs_access=CollectionFsAccess and...
2016-08-11 radhikacloses #9678
2016-08-11 radhikacloses #9658
2016-08-10 radhika9658: when arvados-cwl-runner is invoked with --api...
2016-08-04 Peter AmstutzMerge branch '9552-compute-checksum-final-output' refs...
2016-08-04 Tom CleggMerge branch '9406-cgroup-parent'
2016-08-04 Peter Amstutz9552: If compute_checksum is true, check if checksum...
2016-08-04 Ward VandewegeMerge branch '9677-update-install-docs'
2016-08-03 Peter AmstutzMerge branch '9674-cwl-initialworkdir' closes #9674
2016-08-02 Peter Amstutz9674: InitialWorkDirPathMapper bug fix to set correct...
2016-07-28 radhikarefs #9552
2016-07-28 radhika9552: add compute-checksum flag to arvados-cwl-runner
2016-07-27 radhikaMerge branch 'master' into 8568-docker-version-support
2016-07-27 radhikacloses #9552
2016-07-27 radhikaMerge branch 'master' into 9552-compute-checksum-flag
2016-07-26 radhika9552: update cwltool version, which offer compute_check...
2016-07-19 Tom CleggMerge branch '9613-user-profile-string-keys'
2016-07-18 Lucas Di PentimaMerge branch '9438-http-default-timeout'
2016-07-17 Nico CesarMerge branch '9614-cwl-no-websockets'
2016-07-16 Peter Amstutz9614: Don't use websockets for event notification until...
2016-07-15 Peter AmstutzMerge branch 'master' into 9369-arv-cwl-docs
2016-07-15 Peter AmstutzMerge branch '9570-cwl-runner-fixes' closes #9570 ...
2016-07-15 Peter Amstutz9570: Raise exception on workflow failure.
2016-07-15 Peter Amstutz9570: Use special path mapper for staging files to...
2016-07-15 Peter Amstutz9570: Call normalizeFilesDirs to make sure basename...
2016-07-15 Peter Amstutz9570: Adjust Directory objects, too.
2016-07-15 Peter Amstutz9570: Remove spurious print statement.
2016-07-15 Peter Amstutz9570: Update cwl-runner for latest cwltool. Ensure...
2016-07-13 Nico CesarMerge branch '9459-test_with_arvbox_tweaks'
2016-07-13 Tom CleggMerge branch '9567-keep-web-session-test'
2016-07-13 Peter AmstutzFix tests. refs #9570
2016-07-13 Peter AmstutzMerge branch '9486-retry-instance-limit-exceeded' close...
2016-07-13 Peter AmstutzMerge branch '9570-cwl-v1.0' closes #9570
2016-07-13 Peter Amstutz9570: Set docker_outdir consistently.
2016-07-13 Peter Amstutz9570: Fix secondaryFile staging to ensure that all...
2016-07-12 Peter Amstutz9570: Fix for Pathmapper API change. Most tests pass...
2016-07-12 Peter Amstutz9570: Support Directory and file literal features....
2016-07-11 Peter Amstutz9570: Pass tests except related to directory features
2016-07-11 Peter Amstutz9570: CWL v1.0 support wip
2016-06-28 Peter AmstutzMerge branch '9442-cwl-runtime-outdir' closes #9442
2016-06-28 Peter Amstutz9442: Fix runtime.outdir for containers.
2016-06-28 Peter Amstutz9442: Override kwargs["outdir"] so that $(runtime.outdi...
2016-06-27 Lucas Di PentimaMerge branch '9446-refactor-keep-parallel-write-strategy'
2016-06-22 Peter AmstutzMerge branch 'origin-8442-cwl-crunch2' closes #8442
2016-06-22 Peter AmstutzMerge branch 'master' into origin-8442-cwl-crunch2
2016-06-22 Peter Amstutz8442: Code cleanup. Remove dead code. Update comments.
2016-06-21 Peter Amstutz8442: Fix error reporting on missing Docker image
2016-06-21 Peter Amstutz8442: Make work_api parameter to ArvCwlRunner construct...
2016-06-21 Peter Amstutz8442: Bugfixes from end-to-end testing.
2016-06-21 Peter Amstutz8442: Fix tests. Update comments. Rename jobs ->...
2016-06-20 Peter Amstutz8442: Rename --crunch1 and --crunch2 options to --api...
2016-06-15 Peter Amstutz8442: Generatefiles encode utf-8
2016-06-15 Peter Amstutz8442: Submit CommandLineTool containers directly withou...
2016-06-15 Peter Amstutz8442: Tweak internal handling of keep: paths, examine...
2016-06-15 Peter Amstutz8442: more import fixups, import workflow file correctly.
2016-06-15 Peter Amstutz8442: import fixups
2016-06-15 Peter Amstutz8442: Debugging container --submit with crunch2
2016-06-15 Peter Amstutz8442: Adding --submit support with --crunch2. General...
2016-06-15 Peter Amstutz8442: Fix message
2016-06-15 Peter Amstutz8442: raise UnsupportedRequirement for unsupported...
2016-06-15 Peter Amstutz8442: Setting up mount points works. Capturing output...
2016-06-15 Peter Amstutz8442: Return PDH for Docker container. Working on...
2016-06-15 Peter Amstutz8442: Submit containers Work in progess.
2016-06-15 Peter Amstutz8442: Add --crunch1/--crunch2 switch
2016-06-15 Peter Amstutz8442: CWL create crunch2 containers WIP
2016-06-08 radhikaMerge branch 'master' into 8650-container-work-unit
2016-06-08 radhikaMerge branch 'master' into wtsi-hgi-8087-arv-cli-reques...
2016-06-08 radhikaMerge branch '8087-arv-cli-request-body-from-file'...
2016-06-07 radhikaMerge branch 'master' into 9318-dashboard-uses-work...
2016-06-07 radhikacloses #8876
2016-06-07 Peter AmstutzBugfix submitting cwl jobs with arvados-cwl-runner...
2016-06-07 Peter AmstutzMerge branch '9275-cwl-runner-creates-jobs' closes...
2016-06-07 Peter Amstutz9275: Initial pipeline/job component update from response
2016-06-07 radhika9275: Update the update_pipeline_component method to...
2016-06-06 radhika9275: add record to cwl_runner_job as components
2016-06-03 radhika9275: create pipeline_instance in submit mode as well...
2016-05-31 radhikaMerge branch 'master' into 8876-work-unit
2016-05-20 Tom CleggMerge branch 'wtsi-hgi-9231-rename-redunancy-to-replica...
2016-05-19 Peter AmstutzMerge branch '8653-cwl-runner-handle-files' closes...
2016-05-19 Peter Amstutz8653: Fix tests.
2016-05-19 Peter Amstutz8653: Use load_tool.fetch_document() instead of Loader...
2016-05-19 Peter Amstutz8653: Fix pathmapper API
2016-05-19 Peter Amstutz8653: Set basedir for CollectionFsAccess
2016-05-18 Peter Amstutz8653: cwl-runner crunch script rewrites keep file paths...
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