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10165: Handle copying complete collection contents into subdirectory.
[arvados.git] / sdk / cwl /
2016-08-18 radhikacloses #9684 tree | commitdiff
2016-08-17 Lucas Di PentimaMerge branch '9333-api-server-invalid-sql' tree | commitdiff
2016-08-16 Peter Amstutz9783: Report useful error if subdirectory of a collecti... tree | commitdiff
2016-08-15 radhikacloses #9709 tree | commitdiff
2016-08-11 Peter AmstutzFix failing tests. refs #9776 tree | commitdiff
2016-08-11 Peter AmstutzMerge branch '9776-cwl-HOME-TMPDIR' closes #9776 tree | commitdiff
2016-08-11 Peter Amstutz9776: Ensure that $HOME and $TMPDIR are set correctly. tree | commitdiff
2016-08-11 Peter AmstutzMerge branch '9615-cwl-writable-unsupported' refs ... tree | commitdiff
2016-08-11 Peter Amstutz9615: Add check_writable to check for "writable" field... tree | commitdiff
2016-08-11 Peter AmstutzMerge branch '9751-cwl-keep-dir' closes #9751 tree | commitdiff
2016-08-11 Peter Amstutz9552: import compute_checksums from cwltool. tree | commitdiff
2016-08-11 Peter Amstutz9751: Fix handling local Directories tree | commitdiff
2016-08-11 Peter Amstutz9751: Bump cwltool dependency. tree | commitdiff
2016-08-11 Peter Amstutz9751: Fix unit tests. Rename dir6.cwl to keep-dir... tree | commitdiff
2016-08-11 Peter Amstutz9751: Override realpath in CollectionFsAccess tree | commitdiff
2016-08-11 Peter Amstutz9751: Fix direct to keep directory references. tree | commitdiff
2016-08-11 Peter Amstutz9751: Provide make_fs_access=CollectionFsAccess and... tree | commitdiff
2016-08-11 radhikacloses #9678 tree | commitdiff
2016-08-11 radhikacloses #9658 tree | commitdiff
2016-08-10 radhika9658: when arvados-cwl-runner is invoked with --api... tree | commitdiff
2016-08-04 Peter AmstutzMerge branch '9552-compute-checksum-final-output' refs... tree | commitdiff
2016-08-04 Tom CleggMerge branch '9406-cgroup-parent' tree | commitdiff
2016-08-04 Peter Amstutz9552: If compute_checksum is true, check if checksum... tree | commitdiff
2016-08-04 Ward VandewegeMerge branch '9677-update-install-docs' tree | commitdiff
2016-08-03 Peter AmstutzMerge branch '9674-cwl-initialworkdir' closes #9674 tree | commitdiff
2016-08-02 Peter Amstutz9674: InitialWorkDirPathMapper bug fix to set correct... tree | commitdiff
2016-07-28 radhikarefs #9552 tree | commitdiff
2016-07-28 radhika9552: add compute-checksum flag to arvados-cwl-runner tree | commitdiff
2016-07-27 radhikaMerge branch 'master' into 8568-docker-version-support tree | commitdiff
2016-07-27 radhikacloses #9552 tree | commitdiff
2016-07-27 radhikaMerge branch 'master' into 9552-compute-checksum-flag tree | commitdiff
2016-07-26 Brett Smith9659: Bump CWL SDK's versioned dependency on PySDK. tree | commitdiff
2016-07-26 radhika9552: update cwltool version, which offer compute_check... tree | commitdiff
2016-07-19 Tom CleggMerge branch '9613-user-profile-string-keys' tree | commitdiff
2016-07-18 Lucas Di PentimaMerge branch '9438-http-default-timeout' tree | commitdiff
2016-07-17 Nico CesarMerge branch '9614-cwl-no-websockets' tree | commitdiff
2016-07-16 Peter Amstutz9614: Don't use websockets for event notification until... tree | commitdiff
2016-07-15 Peter AmstutzMerge branch 'master' into 9369-arv-cwl-docs tree | commitdiff
2016-07-15 Peter AmstutzMerge branch '9570-cwl-runner-fixes' closes #9570 ... tree | commitdiff
2016-07-15 Peter Amstutz9570: Raise exception on workflow failure. tree | commitdiff
2016-07-15 Peter Amstutz9570: Use special path mapper for staging files to... tree | commitdiff
2016-07-15 Peter Amstutz9570: Call normalizeFilesDirs to make sure basename... tree | commitdiff
2016-07-15 Peter Amstutz9570: Adjust Directory objects, too. tree | commitdiff
2016-07-15 Peter Amstutz9570: Remove spurious print statement. tree | commitdiff
2016-07-15 Peter Amstutz9570: Bump cwltool dependency tree | commitdiff
2016-07-15 Peter Amstutz9570: Update cwl-runner for latest cwltool. Ensure... tree | commitdiff
2016-07-13 Nico CesarMerge branch '9459-test_with_arvbox_tweaks' tree | commitdiff
2016-07-13 Nico Cesar9459: added test_in_arvbox.sh and arvbox the docker... tree | commitdiff
2016-07-13 Tom CleggMerge branch '9567-keep-web-session-test' tree | commitdiff
2016-07-13 Peter AmstutzFix tests. refs #9570 tree | commitdiff
2016-07-13 Peter AmstutzMerge branch '9486-retry-instance-limit-exceeded' close... tree | commitdiff
2016-07-13 Peter AmstutzMerge branch '9570-cwl-v1.0' closes #9570 tree | commitdiff
2016-07-13 Peter Amstutz9570: Set docker_outdir consistently. tree | commitdiff
2016-07-13 Peter Amstutz9570: Update version pin and add reminder to setup... tree | commitdiff
2016-07-13 Peter Amstutz9570: Fix secondaryFile staging to ensure that all... tree | commitdiff
2016-07-12 Peter Amstutz9570: Fix for Pathmapper API change. Most tests pass... tree | commitdiff
2016-07-12 Peter Amstutz9570: Support Directory and file literal features.... tree | commitdiff
2016-07-11 Peter Amstutz9570: Pass tests except related to directory features tree | commitdiff
2016-07-11 Peter Amstutz9570: CWL v1.0 support wip tree | commitdiff
2016-07-07 Tom Clegg9567: Avoid ruamel.yaml >0.11.11. refs #9567 tree | commitdiff
2016-07-07 Tom CleggRevert "Bump cwltool dependency. Previously pinned... tree | commitdiff
2016-07-07 Tom CleggBump cwltool dependency. Previously pinned version... tree | commitdiff
2016-06-30 Peter AmstutzUpdate arvados-cwl-runner cwltool pin to get ruamel... tree | commitdiff
2016-06-29 Peter AmstutzMerge branch '9511-cwl-type-checking' closes #9511 tree | commitdiff
2016-06-29 Peter Amstutz9511: Bump cwltool dependency to get bugfix (81ff56f239... tree | commitdiff
2016-06-28 Peter AmstutzMerge branch '9442-cwl-runtime-outdir' closes #9442 tree | commitdiff
2016-06-28 Peter Amstutz9442: Incorporate check for correct $(runtime.outdir... tree | commitdiff
2016-06-28 Peter Amstutz9442: Fix runtime.outdir for containers. tree | commitdiff
2016-06-28 Peter Amstutz9442: Override kwargs["outdir"] so that $(runtime.outdi... tree | commitdiff
2016-06-27 Lucas Di PentimaMerge branch '9446-refactor-keep-parallel-write-strategy' tree | commitdiff
2016-06-22 Peter AmstutzMerge branch 'origin-8442-cwl-crunch2' closes #8442 tree | commitdiff
2016-06-22 Peter AmstutzMerge branch 'master' into origin-8442-cwl-crunch2 tree | commitdiff
2016-06-22 Peter Amstutz8442: Code cleanup. Remove dead code. Update comments. tree | commitdiff
2016-06-21 Peter Amstutz8442: Fix error reporting on missing Docker image tree | commitdiff
2016-06-21 Peter Amstutz8442: Make work_api parameter to ArvCwlRunner construct... tree | commitdiff
2016-06-21 Peter Amstutz8442: Bugfixes from end-to-end testing. tree | commitdiff
2016-06-21 Peter Amstutz8442: Fix tests. Update comments. Rename jobs ->... tree | commitdiff
2016-06-20 Peter Amstutz8442: Rename --crunch1 and --crunch2 options to --api... tree | commitdiff
2016-06-15 Peter Amstutz8442: Generatefiles encode utf-8 tree | commitdiff
2016-06-15 Peter Amstutz8442: Submit CommandLineTool containers directly withou... tree | commitdiff
2016-06-15 Peter Amstutz8442: Tweak internal handling of keep: paths, examine... tree | commitdiff
2016-06-15 Peter Amstutz8442: more import fixups, import workflow file correctly. tree | commitdiff
2016-06-15 Peter Amstutz8442: import fixups tree | commitdiff
2016-06-15 Peter Amstutz8442: Debugging container --submit with crunch2 tree | commitdiff
2016-06-15 Peter Amstutz8442: Adding --submit support with --crunch2. General... tree | commitdiff
2016-06-15 Peter Amstutz8442: Fix message tree | commitdiff
2016-06-15 Peter Amstutz8442: raise UnsupportedRequirement for unsupported... tree | commitdiff
2016-06-15 Peter Amstutz8442: Setting up mount points works. Capturing output... tree | commitdiff
2016-06-15 Peter Amstutz8442: Return PDH for Docker container. Working on... tree | commitdiff
2016-06-15 Peter Amstutz8442: Submit containers Work in progess. tree | commitdiff
2016-06-15 Peter Amstutz8442: Add --crunch1/--crunch2 switch tree | commitdiff
2016-06-15 Peter Amstutz8442: CWL create crunch2 containers WIP tree | commitdiff
2016-06-08 radhikaMerge branch 'master' into 8650-container-work-unit tree | commitdiff
2016-06-08 radhikaMerge branch 'master' into wtsi-hgi-8087-arv-cli-reques... tree | commitdiff
2016-06-08 radhikaMerge branch '8087-arv-cli-request-body-from-file'... tree | commitdiff
2016-06-07 radhikaMerge branch 'master' into 9318-dashboard-uses-work... tree | commitdiff
2016-06-07 radhikacloses #8876 tree | commitdiff
2016-06-07 Peter AmstutzBugfix submitting cwl jobs with arvados-cwl-runner... tree | commitdiff
2016-06-07 Peter AmstutzMerge branch '9275-cwl-runner-creates-jobs' closes... tree | commitdiff
2016-06-07 Peter Amstutz9275: Initial pipeline/job component update from response tree | commitdiff
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