git.arvados.org - arvados.git/history - sdk/cwl/arvados_cwl/__init_

[arvados.git] / sdk / cwl / arvados_cwl / __init__.py

2016-03-29	Peter Amstutz	8654: Make --submit --wait the default mode.	blob \| commitdiff \| raw
2016-03-29	Peter Amstutz	8815: Rely on system-provided crunchrunner. Also use...	blob \| commitdiff \| raw \| diff to current
2016-03-28	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-25	Peter Amstutz	8654: Passes 100% CWL conformance tests using running...	blob \| commitdiff \| raw \| diff to current
2016-03-25	Peter Amstutz	8654: --version reports versions for arvados-cwl-runner...	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch '8766-cwl-collection-project'	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch 'master' into 8766-cwl-collection-project	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch '8766-cwl-collection-project' into 8654...	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	8766: Refactor logic to copy output collection and...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8766: Port logic from arv-run-pipeline-instance for...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Use iterator instead of readlines() when going...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	Crunchrunner fix connect os.Stderr to cmd.Stderr &...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Remove print statements.	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Handle error on capturing runner output	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Support --quiet	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Support waiting for submitted runner job to complete	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Upload Docker images	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	8654: Add runner job to pipeline instance.	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	8654: Scanning for and uploading dependencies for submi...	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-18	Peter Amstutz	Fix log scanning for "crunchrunner: $(task.outdir)...	blob \| commitdiff \| raw \| diff to current
2016-03-17	Peter Amstutz	8654: Resource upload WIP	blob \| commitdiff \| raw \| diff to current
2016-03-17	Peter Amstutz	Improve exception reporting for arvados-cwl-runner...	blob \| commitdiff \| raw \| diff to current
2016-03-17	radhika	Merge branch '8087-arv-cli-request-body-from-file'...	blob \| commitdiff \| raw \| diff to current
2016-03-16	radhika	Merge branch 'master' into 8554-trash-untrash-unix...	blob \| commitdiff \| raw \| diff to current
2016-03-16	Peter Amstutz	Merge branch 'master' into 6518-crunch2-dispatch-slurm	blob \| commitdiff \| raw \| diff to current
2016-03-15	Tom Clegg	Merge branch '8491-import-build-tools' refs #8491	blob \| commitdiff \| raw \| diff to current
2016-03-14	Peter Amstutz	Merge branch '8673-cwl-runner-project-uuid' closes...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8654: Collect output files into output collection,...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	Merge branch '8673-cwl-runner-project-uuid' into 8654...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8654: Passes in local testing.	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Fix --project-uuid for arv-keepdocker upload.	blob \| commitdiff \| raw \| diff to current
2016-03-11	Tom Clegg	8491: Merge branch 'master' into 8491-import-build...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Tom Clegg	Add 'build/' from commit '555b039609a3c8700c27767c255fd...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Report pipeline instance uuid. Reuse jobs by...	blob \| commitdiff \| raw \| diff to current
2016-03-11	radhika	closes #8558	blob \| commitdiff \| raw \| diff to current
2016-03-11	radhika	Merge branch 'master' into 8558-cwl-propagate-resource-req	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Typo fix for --project-uuid. Refactor main loop...	blob \| commitdiff \| raw \| diff to current
2016-03-10	radhika	8558: when cores not found in resources, use default.	blob \| commitdiff \| raw \| diff to current
2016-03-10	Peter Amstutz	8673: Adding --project-uuid so resources are created...	blob \| commitdiff \| raw \| diff to current
2016-03-10	radhika	8558: compacted code	blob \| commitdiff \| raw \| diff to current
2016-03-09	Peter Amstutz	8636: Fix ArvPathMapper.reversemap to return a tuple...	blob \| commitdiff \| raw \| diff to current
2016-03-09	radhika	8558: update field names and ensure the tests pass	blob \| commitdiff \| raw \| diff to current
2016-03-09	radhika	closes #8508	blob \| commitdiff \| raw \| diff to current
2016-03-08	Peter Amstutz	8558: Add test case for running ArvadosCommandTool	blob \| commitdiff \| raw \| diff to current
2016-03-04	radhika	8558: include min_scratch_mb_per_node in the keys propa...	blob \| commitdiff \| raw \| diff to current
2016-03-04	radhika	Merge branch 'master' into 8558-cwl-propagate-resource-req	blob \| commitdiff \| raw \| diff to current
2016-03-04	radhika	8558: add min_cores_per_node and min_ram_mb_per_node...	blob \| commitdiff \| raw \| diff to current
2016-03-03	radhika	Merge branch '8497-datamanager-batchsize-1000' of https...	blob \| commitdiff \| raw \| diff to current
2016-03-03	Peter Amstutz	Merge branch '8620-better-README' closes #8620	blob \| commitdiff \| raw \| diff to current
2016-03-03	Peter Amstutz	Merge branch '8488-cwl-crunchrunner-collection' closes...	blob \| commitdiff \| raw \| diff to current
2016-03-03	Peter Amstutz	8488: Fix reverse mapping for references to input files...	blob \| commitdiff \| raw \| diff to current
2016-03-02	Peter Amstutz	8488: Match line beginnings	blob \| commitdiff \| raw \| diff to current
2016-03-02	Peter Amstutz	8488: Set docker_outdir to get correct outdir in comman...	blob \| commitdiff \| raw \| diff to current
2016-03-02	Peter Amstutz	8488: Determine actual output dir from reading logs...	blob \| commitdiff \| raw \| diff to current
2016-03-01	Peter Amstutz	Merge branch '8015-crunch2-mount' closes #8015	blob \| commitdiff \| raw \| diff to current
2016-03-01	Peter Amstutz	Add 'tools/arvbox/' from commit 'd3d368758db1f4a9fa5b89...	blob \| commitdiff \| raw \| diff to current
2016-03-01	Peter Amstutz	Merge branch '6605-arv-copy-http' closes #6605	blob \| commitdiff \| raw \| diff to current
2016-02-29	Tom Clegg	8099: 7263: Merge branch 'hgi/7263-even-better-busy...	blob \| commitdiff \| raw \| diff to current
2016-02-29	Peter Amstutz	8488: Use OrderedJsonModel so that pipeline components...	blob \| commitdiff \| raw \| diff to current
2016-02-25	Peter Amstutz	8488: Fix output collection to accomodate reverse mappi...	blob \| commitdiff \| raw \| diff to current
2016-02-23	Peter Amstutz	8488: Update default arvados branch to master	blob \| commitdiff \| raw \| diff to current
2016-02-23	Peter Amstutz	8488: crunchrunner brings certificates with it to ensur...	blob \| commitdiff \| raw \| diff to current
2016-02-23	Peter Amstutz	8488: Set certificate path.	blob \| commitdiff \| raw \| diff to current
2016-02-19	Tom Clegg	Merge branch '8484-sanity-check-collection-count' close...	blob \| commitdiff \| raw \| diff to current
2016-02-19	Tom Clegg	Merge branch '8485-datamanager-identical-modifiedat...	blob \| commitdiff \| raw \| diff to current
2016-02-19	Peter Amstutz	8488: Use crunchrunner binary instead of git repo	blob \| commitdiff \| raw \| diff to current
2016-02-19	Peter Amstutz	Merge branch '8015-crunch2-mount' into 6518-crunch2...	blob \| commitdiff \| raw \| diff to current
2016-02-18	radhika	Merge branch 'master' into 8441-project-chooser	blob \| commitdiff \| raw \| diff to current
2016-02-18	Tom Clegg	Merge branch '8400-additional-gitignore' of https:...	blob \| commitdiff \| raw \| diff to current
2016-02-18	Peter Amstutz	Merge branch '8319-bcbio-cwl' closes #8319	blob \| commitdiff \| raw \| diff to current
2016-02-17	Peter Amstutz	8319: Add log message about uploading docker image	blob \| commitdiff \| raw \| diff to current
2016-01-29	Peter Amstutz	8319: Fixes to run bcbio-nextgen CWL workflow. Now...	blob \| commitdiff \| raw \| diff to current
2016-01-28	Peter Amstutz	8319: Fix arv-cwl-runner file references when referenci...	blob \| commitdiff \| raw \| diff to current
2015-12-11	Peter Amstutz	Merge branch 'master' into 7454-azure-custom-data	blob \| commitdiff \| raw \| diff to current
2015-11-09	radhika	Merge branch 'master' into 7661-fuse-by-pdh	blob \| commitdiff \| raw \| diff to current
2015-11-04	Tom Clegg	Merge branch '7444-dockercleaner-containers' closes...	blob \| commitdiff \| raw \| diff to current
2015-11-04	Tom Clegg	Merge branch '5824-keep-web' into 5824-keep-web-workbench	blob \| commitdiff \| raw \| diff to current
2015-11-04	Tom Clegg	5824: Merge branch 'master' into 5824-keep-web	blob \| commitdiff \| raw \| diff to current
2015-11-03	radhika	Merge branch 'master' into 7534-superuser-token	blob \| commitdiff \| raw \| diff to current
2015-11-02	Peter Amstutz	Merge branch '7593-cwl-crunchrunner' closes #7593	blob \| commitdiff \| raw \| diff to current
2015-11-02	Peter Amstutz	7593: Add version hint to arvados-python-client. Add...	blob \| commitdiff \| raw \| diff to current
2015-10-28	Peter Amstutz	7593: Make peter/crunchrunner the default repository...	blob \| commitdiff \| raw \| diff to current
2015-10-28	Peter Amstutz	7593: Generate files replaces $(task.keep)/ with keep...	blob \| commitdiff \| raw \| diff to current
2015-10-27	Peter Amstutz	7593: Fixup to use keep: URI scheme globbing for outputs.	blob \| commitdiff \| raw \| diff to current
2015-10-27	Peter Amstutz	7593: References to files in keep must have keep: URI...	blob \| commitdiff \| raw \| diff to current
2015-10-26	Peter Amstutz	7593: Don't upload the same files more than once. ...	blob \| commitdiff \| raw \| diff to current
2015-10-26	Peter Amstutz	7582: Passes draft-2 conformance tests.	blob \| commitdiff \| raw \| diff to current
2015-10-23	Peter Amstutz	7582: Fixup to work with latest cwltool. Runs jobs...	blob \| commitdiff \| raw \| diff to current
2015-09-04	Joshua C. Randall	Merge pull request #2 from wtsi-hgi/feature/arv-view	blob \| commitdiff \| raw \| diff to current
2015-08-03	Brett Smith	Merge branch '6221-write-trash-list'	blob \| commitdiff \| raw \| diff to current
2015-07-31	Tom Clegg	Merge branch 'git-commit-debug' of https://github.com...	blob \| commitdiff \| raw \| diff to current
2015-07-31	Tom Clegg	Merge branch 'crunch-dispatch-docker-bin-env' of https...	blob \| commitdiff \| raw \| diff to current
2015-07-22	Peter Amstutz	Merge branch '6264-cwl-runner' closes #6264	blob \| commitdiff \| raw \| diff to current
2015-07-21	Peter Amstutz	6264: Code cleanup: rename "i" in _match() to "filename...	blob \| commitdiff \| raw \| diff to current
2015-07-21	Peter Amstutz	6264: Use mutually exclusive group for enable/disable...	blob \| commitdiff \| raw \| diff to current
2015-07-07	Peter Amstutz	6264: Fix bin/cwl-runner to import correct module.	blob \| commitdiff \| raw \| diff to current

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