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8654: Passes 100% CWL conformance tests using running cwl-runner in a crunch job!
[arvados.git] / sdk / cwl /
2016-03-25 Peter Amstutz8654: Passes 100% CWL conformance tests using running... tree | commitdiff
2016-03-25 Peter Amstutz8654: --version reports versions for arvados-cwl-runner... tree | commitdiff
2016-03-23 Peter AmstutzMerge branch '8766-cwl-collection-project' into 8654... tree | commitdiff
2016-03-23 Peter Amstutz8766: Refactor logic to copy output collection and... tree | commitdiff
2016-03-22 Peter Amstutz8766: Port logic from arv-run-pipeline-instance for... tree | commitdiff
2016-03-22 Peter Amstutz8654: Bump cwltool version tree | commitdiff
2016-03-22 Peter Amstutz8654: Use iterator instead of readlines() when going... tree | commitdiff
2016-03-22 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-22 Peter AmstutzCrunchrunner fix connect os.Stderr to cmd.Stderr &... tree | commitdiff
2016-03-22 Peter Amstutz8654: Remove print statements. tree | commitdiff
2016-03-22 Peter Amstutz8654: Handle error on capturing runner output tree | commitdiff
2016-03-22 Peter Amstutz8654: Support --quiet tree | commitdiff
2016-03-22 Peter Amstutz8654: Support waiting for submitted runner job to complete tree | commitdiff
2016-03-22 Peter Amstutz8654: Upload Docker images tree | commitdiff
2016-03-22 Peter Amstutz8654: Bump arvados-cwl-runner version dependency on... tree | commitdiff
2016-03-21 Peter Amstutz8654: Bump arvados-cwl-runner version dependency on... tree | commitdiff
2016-03-21 Peter Amstutz8654: Add runner job to pipeline instance. tree | commitdiff
2016-03-21 Peter Amstutz8654: Scanning for and uploading dependencies for submi... tree | commitdiff
2016-03-21 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-18 Peter AmstutzFix log scanning for "crunchrunner: $(task.outdir)... tree | commitdiff
2016-03-17 Peter Amstutz8654: Resource upload WIP tree | commitdiff
2016-03-17 Peter AmstutzImprove exception reporting for arvados-cwl-runner... tree | commitdiff
2016-03-16 radhikaMerge branch 'master' into 8554-trash-untrash-unix... tree | commitdiff
2016-03-16 Peter AmstutzMerge branch 'master' into 6518-crunch2-dispatch-slurm tree | commitdiff
2016-03-15 Tom CleggMerge branch '8491-import-build-tools' refs #8491 tree | commitdiff
2016-03-14 Peter AmstutzReally fix cwl-runner tests this time. refs #8673 tree | commitdiff
2016-03-14 Peter AmstutzFix cwl-runner tests. refs #8673 tree | commitdiff
2016-03-14 Peter AmstutzMerge branch '8673-cwl-runner-project-uuid' closes... tree | commitdiff
2016-03-11 Peter Amstutz8654: Collect output files into output collection,... tree | commitdiff
2016-03-11 Peter AmstutzMerge branch '8673-cwl-runner-project-uuid' into 8654... tree | commitdiff
2016-03-11 Peter Amstutz8654: Passes in local testing. tree | commitdiff
2016-03-11 Peter Amstutz8673: Fix --project-uuid for arv-keepdocker upload. tree | commitdiff
2016-03-11 Tom Clegg8491: Merge branch 'master' into 8491-import-build... tree | commitdiff
2016-03-11 Tom CleggAdd 'build/' from commit '555b039609a3c8700c27767c255fd... tree | commitdiff
2016-03-11 Peter Amstutz8673: Report pipeline instance uuid. Reuse jobs by... tree | commitdiff
2016-03-11 radhikacloses #8558 tree | commitdiff
2016-03-11 radhikaMerge branch 'master' into 8558-cwl-propagate-resource-req tree | commitdiff
2016-03-11 Peter Amstutz8673: Typo fix for --project-uuid. Refactor main loop... tree | commitdiff
2016-03-10 radhika8558: when cores not found in resources, use default. tree | commitdiff
2016-03-10 Peter Amstutz8673: Adding --project-uuid so resources are created... tree | commitdiff
2016-03-10 radhika8558: compacted code tree | commitdiff
2016-03-09 Peter Amstutz8636: Fix ArvPathMapper.reversemap to return a tuple... tree | commitdiff
2016-03-09 radhika8558: update field names and ensure the tests pass tree | commitdiff
2016-03-09 radhikacloses #8508 tree | commitdiff
2016-03-08 Peter Amstutz8558: Add test case for running ArvadosCommandTool tree | commitdiff
2016-03-04 radhika8558: include min_scratch_mb_per_node in the keys propa... tree | commitdiff
2016-03-04 radhikaMerge branch 'master' into 8558-cwl-propagate-resource-req tree | commitdiff
2016-03-04 Peter AmstutzCWL test select config, refs #8558 tree | commitdiff
2016-03-04 Peter AmstutzBugfix for CWL conformance test script, refs #8558 tree | commitdiff
2016-03-04 Peter AmstutzSelf test script for running CWL conformance tests... tree | commitdiff
2016-03-04 radhika8558: add min_cores_per_node and min_ram_mb_per_node... tree | commitdiff
2016-03-03 radhikaMerge branch '8497-datamanager-batchsize-1000' of https... tree | commitdiff
2016-03-03 Peter AmstutzMerge branch '8620-better-README' closes #8620 tree | commitdiff
2016-03-03 Peter AmstutzMerge branch '8488-cwl-crunchrunner-collection' closes... tree | commitdiff
2016-03-03 Peter Amstutz8488: Fix reverse mapping for references to input files... tree | commitdiff
2016-03-02 Peter Amstutz8488: Match line beginnings tree | commitdiff
2016-03-02 Peter Amstutz8488: Set docker_outdir to get correct outdir in comman... tree | commitdiff
2016-03-02 Peter Amstutz8488: Determine actual output dir from reading logs... tree | commitdiff
2016-03-01 Peter AmstutzMerge branch '8015-crunch2-mount' closes #8015 tree | commitdiff
2016-03-01 Peter AmstutzAdd 'tools/arvbox/' from commit 'd3d368758db1f4a9fa5b89... tree | commitdiff
2016-03-01 Peter AmstutzMerge branch '6605-arv-copy-http' closes #6605 tree | commitdiff
2016-02-29 Tom Clegg8099: 7263: Merge branch 'hgi/7263-even-better-busy... tree | commitdiff
2016-02-29 Peter Amstutz8488: Use OrderedJsonModel so that pipeline components... tree | commitdiff
2016-02-26 Peter Amstutz8488: Update cwltool pin tree | commitdiff
2016-02-25 Peter Amstutz8488: Fix output collection to accomodate reverse mappi... tree | commitdiff
2016-02-23 Peter Amstutz8488: Update default arvados branch to master tree | commitdiff
2016-02-23 Peter Amstutz8488: crunchrunner brings certificates with it to ensur... tree | commitdiff
2016-02-23 Peter Amstutz8488: Set certificate path. tree | commitdiff
2016-02-19 Tom CleggMerge branch '8484-sanity-check-collection-count' close... tree | commitdiff
2016-02-19 Tom CleggMerge branch '8485-datamanager-identical-modifiedat... tree | commitdiff
2016-02-19 Peter Amstutz8488: Use crunchrunner binary instead of git repo tree | commitdiff
2016-02-19 Peter AmstutzMerge branch '8015-crunch2-mount' into 6518-crunch2... tree | commitdiff
2016-02-18 radhikaMerge branch 'master' into 8441-project-chooser tree | commitdiff
2016-02-18 Tom CleggMerge branch '8400-additional-gitignore' of https:... tree | commitdiff
2016-02-18 Peter AmstutzMerge branch '8319-bcbio-cwl' closes #8319 tree | commitdiff
2016-02-17 Peter Amstutz8319: Add log message about uploading docker image tree | commitdiff
2016-01-29 Peter Amstutz8319: Fixes to run bcbio-nextgen CWL workflow. Now... tree | commitdiff
2016-01-28 Peter Amstutz8319: Fix arv-cwl-runner file references when referenci... tree | commitdiff
2015-12-11 Peter AmstutzMerge branch 'master' into 7454-azure-custom-data tree | commitdiff
2015-11-09 radhikaMerge branch 'master' into 7661-fuse-by-pdh tree | commitdiff
2015-11-04 Tom CleggMerge branch '7444-dockercleaner-containers' closes... tree | commitdiff
2015-11-04 Tom CleggMerge branch '5824-keep-web' into 5824-keep-web-workbench tree | commitdiff
2015-11-04 Tom Clegg5824: Merge branch 'master' into 5824-keep-web tree | commitdiff
2015-11-03 radhikaMerge branch 'master' into 7534-superuser-token tree | commitdiff
2015-11-02 Peter AmstutzMerge branch '7593-cwl-crunchrunner' closes #7593 tree | commitdiff
2015-11-02 Peter Amstutz7593: Add version hint to arvados-python-client. Add... tree | commitdiff
2015-10-29 Peter Amstutz7593: Add arvados-cwl-runner to disambiguate if there... tree | commitdiff
2015-10-28 Peter Amstutz7593: Make peter/crunchrunner the default repository... tree | commitdiff
2015-10-28 Peter Amstutz7593: Generate files replaces $(task.keep)/ with keep... tree | commitdiff
2015-10-27 Peter Amstutz7593: Fixup to use keep: URI scheme globbing for outputs. tree | commitdiff
2015-10-27 Peter Amstutz7593: References to files in keep must have keep: URI... tree | commitdiff
2015-10-26 Peter Amstutz7593: Don't upload the same files more than once. ... tree | commitdiff
2015-10-26 Brett SmithMerge branch 'pr/25' tree | commitdiff
2015-10-26 Peter Amstutz7582: Passes draft-2 conformance tests. tree | commitdiff
2015-10-23 Peter Amstutz7582: Fixup to work with latest cwltool. Runs jobs... tree | commitdiff
2015-10-20 Brett SmithMerge branch 'pr/28' tree | commitdiff
2015-10-15 Tom CleggMerge branch 'master' into wtsi-hgi-feature/arv-view tree | commitdiff
2015-10-09 radhikaMerge branch '7167-keep-rsync-test-setup' into 7167... tree | commitdiff
2015-10-09 radhikaMerge branch 'master' into 7167-keep-rsync-test-setup tree | commitdiff
2015-10-09 Peter AmstutzMerge branch 'master' into 7491-go-keepclient-retry tree | commitdiff
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