git.arvados.org - arvados.git/history - sdk/cwl/arvados_cwl/__init_

[arvados.git] / sdk / cwl / arvados_cwl / __init__.py

2016-06-27	Lucas Di Pentima	Merge branch '9446-refactor-keep-parallel-write-strategy'	blob \| commitdiff \| raw
2016-06-22	Peter Amstutz	Merge branch 'origin-8442-cwl-crunch2' closes #8442	blob \| commitdiff \| raw
2016-06-22	Peter Amstutz	Merge branch 'master' into origin-8442-cwl-crunch2	blob \| commitdiff \| raw
2016-06-21	Peter Amstutz	8442: Fix error reporting on missing Docker image	blob \| commitdiff \| raw
2016-06-21	Peter Amstutz	8442: Make work_api parameter to ArvCwlRunner construct...	blob \| commitdiff \| raw \| diff to current
2016-06-21	Peter Amstutz	8442: Fix tests. Update comments. Rename jobs ->...	blob \| commitdiff \| raw \| diff to current
2016-06-20	Peter Amstutz	8442: Rename --crunch1 and --crunch2 options to --api...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Submit CommandLineTool containers directly withou...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Tweak internal handling of keep: paths, examine...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Debugging container --submit with crunch2	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Adding --submit support with --crunch2. General...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: raise UnsupportedRequirement for unsupported...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Setting up mount points works. Capturing output...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Return PDH for Docker container. Working on...	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Submit containers Work in progess.	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: Add --crunch1/--crunch2 switch	blob \| commitdiff \| raw \| diff to current
2016-06-15	Peter Amstutz	8442: CWL create crunch2 containers WIP	blob \| commitdiff \| raw \| diff to current
2016-06-08	radhika	Merge branch 'master' into 8650-container-work-unit	blob \| commitdiff \| raw \| diff to current
2016-06-08	radhika	Merge branch 'master' into wtsi-hgi-8087-arv-cli-reques...	blob \| commitdiff \| raw \| diff to current
2016-06-08	radhika	Merge branch '8087-arv-cli-request-body-from-file'...	blob \| commitdiff \| raw \| diff to current
2016-06-07	radhika	Merge branch 'master' into 9318-dashboard-uses-work...	blob \| commitdiff \| raw \| diff to current
2016-06-07	radhika	closes #8876	blob \| commitdiff \| raw \| diff to current
2016-06-07	Peter Amstutz	Bugfix submitting cwl jobs with arvados-cwl-runner...	blob \| commitdiff \| raw \| diff to current
2016-06-07	Peter Amstutz	Merge branch '9275-cwl-runner-creates-jobs' closes...	blob \| commitdiff \| raw \| diff to current
2016-06-07	Peter Amstutz	9275: Initial pipeline/job component update from response	blob \| commitdiff \| raw \| diff to current
2016-06-07	radhika	9275: Update the update_pipeline_component method to...	blob \| commitdiff \| raw \| diff to current
2016-06-06	radhika	9275: add record to cwl_runner_job as components	blob \| commitdiff \| raw \| diff to current
2016-06-03	radhika	9275: create pipeline_instance in submit mode as well...	blob \| commitdiff \| raw \| diff to current
2016-05-31	radhika	Merge branch 'master' into 8876-work-unit	blob \| commitdiff \| raw \| diff to current
2016-05-20	Tom Clegg	Merge branch 'wtsi-hgi-9231-rename-redunancy-to-replica...	blob \| commitdiff \| raw \| diff to current
2016-05-19	Peter Amstutz	Merge branch '8653-cwl-runner-handle-files' closes...	blob \| commitdiff \| raw \| diff to current
2016-05-19	Peter Amstutz	8653: Fix tests.	blob \| commitdiff \| raw \| diff to current
2016-05-19	Peter Amstutz	8653: Use load_tool.fetch_document() instead of Loader...	blob \| commitdiff \| raw \| diff to current
2016-05-19	Peter Amstutz	8653: Fix pathmapper API	blob \| commitdiff \| raw \| diff to current
2016-05-19	Peter Amstutz	8653: Set basedir for CollectionFsAccess	blob \| commitdiff \| raw \| diff to current
2016-05-18	Peter Amstutz	8653: cwl-runner crunch script rewrites keep file paths...	blob \| commitdiff \| raw \| diff to current
2016-05-03	Peter Amstutz	Merge branch '8998-optimize-decode-www-form-component...	blob \| commitdiff \| raw \| diff to current
2016-05-02	Tom Clegg	Merge branch '8653-cwl-to-template'	blob \| commitdiff \| raw \| diff to current
2016-05-02	Tom Clegg	8653: Add arvados-cwl-runner --create-template flag	blob \| commitdiff \| raw \| diff to current
2016-04-12	radhika	Merge branch 'master' into 8724-keep-block-check-script	blob \| commitdiff \| raw \| diff to current
2016-04-10	Peter Amstutz	Merge branch '8799-make-drained-nodes-idle' closes...	blob \| commitdiff \| raw \| diff to current
2016-04-07	radhika	Merge branch 'master' into 7658-websockets-reconnect...	blob \| commitdiff \| raw \| diff to current
2016-04-06	Brett Smith	Merge branch '8879-cwl-runner-job-owner-wip'	blob \| commitdiff \| raw \| diff to current
2016-04-06	Brett Smith	8879: cwl-runner --submit respects --project-uuid.	blob \| commitdiff \| raw \| diff to current
2016-04-01	Peter Amstutz	Merge branch '8816-compute-node-update-exception' close...	blob \| commitdiff \| raw \| diff to current
2016-04-01	Brett Smith	Merge branch '8782-reapchildren-after-signal-wip'	blob \| commitdiff \| raw \| diff to current
2016-04-01	Peter Amstutz	Merge branch '8857-cwl-job-reuse' closes #8857	blob \| commitdiff \| raw \| diff to current
2016-04-01	Peter Amstutz	Merge branch 'master' into 8857-cwl-job-reuse	blob \| commitdiff \| raw \| diff to current
2016-03-31	Peter Amstutz	Merge branch '8840-lock-job-record' closes #8840	blob \| commitdiff \| raw \| diff to current
2016-03-31	Peter Amstutz	Merge branch '8654-arv-jobs-cwl-runner' closes #8654	blob \| commitdiff \| raw \| diff to current
2016-03-31	Peter Amstutz	8654: Fix versionstring(). Improve help text / comment...	blob \| commitdiff \| raw \| diff to current
2016-03-31	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-31	Peter Amstutz	8857: Add --ignore-docker-for-reuse option to assist...	blob \| commitdiff \| raw \| diff to current
2016-03-30	Peter Amstutz	8654: Add comments	blob \| commitdiff \| raw \| diff to current
2016-03-30	Peter Amstutz	8654: Print uuid of uploaded docker image on stderr...	blob \| commitdiff \| raw \| diff to current
2016-03-30	radhika	Merge branch 'master' into 8703-job-components	blob \| commitdiff \| raw \| diff to current
2016-03-30	Peter Amstutz	8654: Update test_with_arvbox.sh	blob \| commitdiff \| raw \| diff to current
2016-03-29	Peter Amstutz	8654: Fix version string produced by arvados-cwl-runner.	blob \| commitdiff \| raw \| diff to current
2016-03-29	Peter Amstutz	Merge branch '8815-crunchrunner-everywhere' closes...	blob \| commitdiff \| raw \| diff to current
2016-03-29	Peter Amstutz	Merge branch '8815-crunchrunner-everywhere' into 8654...	blob \| commitdiff \| raw \| diff to current
2016-03-29	Peter Amstutz	8654: Make --submit --wait the default mode.	blob \| commitdiff \| raw \| diff to current
2016-03-29	Peter Amstutz	8815: Rely on system-provided crunchrunner. Also use...	blob \| commitdiff \| raw \| diff to current
2016-03-28	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-25	Peter Amstutz	8654: Passes 100% CWL conformance tests using running...	blob \| commitdiff \| raw \| diff to current
2016-03-25	Peter Amstutz	8654: --version reports versions for arvados-cwl-runner...	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch '8766-cwl-collection-project'	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch 'master' into 8766-cwl-collection-project	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	Merge branch '8766-cwl-collection-project' into 8654...	blob \| commitdiff \| raw \| diff to current
2016-03-23	Peter Amstutz	8766: Refactor logic to copy output collection and...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8766: Port logic from arv-run-pipeline-instance for...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Use iterator instead of readlines() when going...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	Crunchrunner fix connect os.Stderr to cmd.Stderr &...	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Remove print statements.	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Handle error on capturing runner output	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Support --quiet	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Support waiting for submitted runner job to complete	blob \| commitdiff \| raw \| diff to current
2016-03-22	Peter Amstutz	8654: Upload Docker images	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	8654: Add runner job to pipeline instance.	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	8654: Scanning for and uploading dependencies for submi...	blob \| commitdiff \| raw \| diff to current
2016-03-21	Peter Amstutz	Merge branch 'master' into 8654-arv-jobs-cwl-runner	blob \| commitdiff \| raw \| diff to current
2016-03-18	Peter Amstutz	Fix log scanning for "crunchrunner: $(task.outdir)...	blob \| commitdiff \| raw \| diff to current
2016-03-17	Peter Amstutz	8654: Resource upload WIP	blob \| commitdiff \| raw \| diff to current
2016-03-17	Peter Amstutz	Improve exception reporting for arvados-cwl-runner...	blob \| commitdiff \| raw \| diff to current
2016-03-17	radhika	Merge branch '8087-arv-cli-request-body-from-file'...	blob \| commitdiff \| raw \| diff to current
2016-03-16	radhika	Merge branch 'master' into 8554-trash-untrash-unix...	blob \| commitdiff \| raw \| diff to current
2016-03-16	Peter Amstutz	Merge branch 'master' into 6518-crunch2-dispatch-slurm	blob \| commitdiff \| raw \| diff to current
2016-03-15	Tom Clegg	Merge branch '8491-import-build-tools' refs #8491	blob \| commitdiff \| raw \| diff to current
2016-03-14	Peter Amstutz	Merge branch '8673-cwl-runner-project-uuid' closes...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8654: Collect output files into output collection,...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	Merge branch '8673-cwl-runner-project-uuid' into 8654...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8654: Passes in local testing.	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Fix --project-uuid for arv-keepdocker upload.	blob \| commitdiff \| raw \| diff to current
2016-03-11	Tom Clegg	8491: Merge branch 'master' into 8491-import-build...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Tom Clegg	Add 'build/' from commit '555b039609a3c8700c27767c255fd...	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Report pipeline instance uuid. Reuse jobs by...	blob \| commitdiff \| raw \| diff to current
2016-03-11	radhika	closes #8558	blob \| commitdiff \| raw \| diff to current
2016-03-11	radhika	Merge branch 'master' into 8558-cwl-propagate-resource-req	blob \| commitdiff \| raw \| diff to current
2016-03-11	Peter Amstutz	8673: Typo fix for --project-uuid. Refactor main loop...	blob \| commitdiff \| raw \| diff to current
2016-03-10	radhika	8558: when cores not found in resources, use default.	blob \| commitdiff \| raw \| diff to current
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