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Fix sdk/cwl tests after commit 9df4d7da24ef8be639af1ab806cf833ee544fb45
[arvados.git]
/
sdk
/
cwl
/
2016-03-23
Ward Vandewege
Fix sdk/cwl tests after commit 9df4d7da24ef8be639af1ab8...
tree
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commitdiff
2016-03-22
Peter Amstutz
Crunchrunner fix connect os.Stderr to cmd.Stderr &...
tree
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commitdiff
2016-03-18
Peter Amstutz
Fix log scanning for "crunchrunner: $(task.outdir)...
tree
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commitdiff
2016-03-17
Peter Amstutz
Improve exception reporting for arvados-cwl-runner...
tree
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commitdiff
2016-03-16
radhika
Merge branch 'master' into 8554-trash-untrash-unix...
tree
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commitdiff
2016-03-16
Peter Amstutz
Merge branch 'master' into 6518-crunch2-dispatch-slurm
tree
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commitdiff
2016-03-15
Tom Clegg
Merge branch '8491-import-build-tools' refs #8491
tree
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commitdiff
2016-03-14
Peter Amstutz
Really fix cwl-runner tests this time. refs #8673
tree
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commitdiff
2016-03-14
Peter Amstutz
Fix cwl-runner tests. refs #8673
tree
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commitdiff
2016-03-14
Peter Amstutz
Merge branch '8673-cwl-runner-project-uuid' closes...
tree
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commitdiff
2016-03-11
Peter Amstutz
8673: Fix --project-uuid for arv-keepdocker upload.
tree
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commitdiff
2016-03-11
Tom Clegg
8491: Merge branch 'master' into 8491-import-build...
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commitdiff
2016-03-11
Tom Clegg
Add 'build/' from commit '555b039609a3c8700c27767c255fd...
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commitdiff
2016-03-11
Peter Amstutz
8673: Report pipeline instance uuid. Reuse jobs by...
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commitdiff
2016-03-11
radhika
closes #8558
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commitdiff
2016-03-11
radhika
Merge branch 'master' into 8558-cwl-propagate-resource-req
tree
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commitdiff
2016-03-11
Peter Amstutz
8673: Typo fix for --project-uuid. Refactor main loop...
tree
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commitdiff
2016-03-10
radhika
8558: when cores not found in resources, use default.
tree
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commitdiff
2016-03-10
Peter Amstutz
8673: Adding --project-uuid so resources are created...
tree
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commitdiff
2016-03-10
radhika
8558: compacted code
tree
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commitdiff
2016-03-09
Peter Amstutz
8636: Fix ArvPathMapper.reversemap to return a tuple...
tree
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commitdiff
2016-03-09
radhika
8558: update field names and ensure the tests pass
tree
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commitdiff
2016-03-09
radhika
closes #8508
tree
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commitdiff
2016-03-08
Peter Amstutz
8558: Add test case for running ArvadosCommandTool
tree
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commitdiff
2016-03-04
radhika
8558: include min_scratch_mb_per_node in the keys propa...
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commitdiff
2016-03-04
radhika
Merge branch 'master' into 8558-cwl-propagate-resource-req
tree
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commitdiff
2016-03-04
Peter Amstutz
CWL test select config, refs #8558
tree
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commitdiff
2016-03-04
Peter Amstutz
Bugfix for CWL conformance test script, refs #8558
tree
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commitdiff
2016-03-04
Peter Amstutz
Self test script for running CWL conformance tests...
tree
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commitdiff
2016-03-04
radhika
8558: add min_cores_per_node and min_ram_mb_per_node...
tree
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commitdiff
2016-03-03
radhika
Merge branch '8497-datamanager-batchsize-1000' of https...
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commitdiff
2016-03-03
Peter Amstutz
Merge branch '8620-better-README' closes #8620
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commitdiff
2016-03-03
Peter Amstutz
Merge branch '8488-cwl-crunchrunner-collection' closes...
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commitdiff
2016-03-03
Peter Amstutz
8488: Fix reverse mapping for references to input files...
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commitdiff
2016-03-02
Peter Amstutz
8488: Match line beginnings
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commitdiff
2016-03-02
Peter Amstutz
8488: Set docker_outdir to get correct outdir in comman...
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commitdiff
2016-03-02
Peter Amstutz
8488: Determine actual output dir from reading logs...
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commitdiff
2016-03-01
Peter Amstutz
Merge branch '8015-crunch2-mount' closes #8015
tree
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commitdiff
2016-03-01
Peter Amstutz
Add 'tools/arvbox/' from commit 'd3d368758db1f4a9fa5b89...
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commitdiff
2016-03-01
Peter Amstutz
Merge branch '6605-arv-copy-http' closes #6605
tree
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commitdiff
2016-02-29
Tom Clegg
8099: 7263: Merge branch 'hgi/7263-even-better-busy...
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commitdiff
2016-02-29
Peter Amstutz
8488: Use OrderedJsonModel so that pipeline components...
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commitdiff
2016-02-26
Peter Amstutz
8488: Update cwltool pin
tree
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commitdiff
2016-02-25
Peter Amstutz
8488: Fix output collection to accomodate reverse mappi...
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commitdiff
2016-02-23
Peter Amstutz
8488: Update default arvados branch to master
tree
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commitdiff
2016-02-23
Peter Amstutz
8488: crunchrunner brings certificates with it to ensur...
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commitdiff
2016-02-23
Peter Amstutz
8488: Set certificate path.
tree
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commitdiff
2016-02-19
Tom Clegg
Merge branch '8484-sanity-check-collection-count' close...
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commitdiff
2016-02-19
Tom Clegg
Merge branch '8485-datamanager-identical-modifiedat...
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commitdiff
2016-02-19
Peter Amstutz
8488: Use crunchrunner binary instead of git repo
tree
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commitdiff
2016-02-19
Peter Amstutz
Merge branch '8015-crunch2-mount' into 6518-crunch2...
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commitdiff
2016-02-18
radhika
Merge branch 'master' into 8441-project-chooser
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commitdiff
2016-02-18
Tom Clegg
Merge branch '8400-additional-gitignore' of https:...
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commitdiff
2016-02-18
Peter Amstutz
Merge branch '8319-bcbio-cwl' closes #8319
tree
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commitdiff
2016-02-17
Peter Amstutz
8319: Add log message about uploading docker image
tree
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commitdiff
2016-01-29
Peter Amstutz
8319: Fixes to run bcbio-nextgen CWL workflow. Now...
tree
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commitdiff
2016-01-28
Peter Amstutz
8319: Fix arv-cwl-runner file references when referenci...
tree
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commitdiff
2015-12-11
Peter Amstutz
Merge branch 'master' into 7454-azure-custom-data
tree
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commitdiff
2015-11-09
radhika
Merge branch 'master' into 7661-fuse-by-pdh
tree
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commitdiff
2015-11-04
Tom Clegg
Merge branch '7444-dockercleaner-containers' closes...
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commitdiff
2015-11-04
Tom Clegg
Merge branch '5824-keep-web' into 5824-keep-web-workbench
tree
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commitdiff
2015-11-04
Tom Clegg
5824: Merge branch 'master' into 5824-keep-web
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commitdiff
2015-11-03
radhika
Merge branch 'master' into 7534-superuser-token
tree
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commitdiff
2015-11-02
Peter Amstutz
Merge branch '7593-cwl-crunchrunner' closes #7593
tree
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commitdiff
2015-11-02
Peter Amstutz
7593: Add version hint to arvados-python-client. Add...
tree
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commitdiff
2015-10-29
Peter Amstutz
7593: Add arvados-cwl-runner to disambiguate if there...
tree
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commitdiff
2015-10-28
Peter Amstutz
7593: Make peter/crunchrunner the default repository...
tree
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commitdiff
2015-10-28
Peter Amstutz
7593: Generate files replaces $(task.keep)/ with keep...
tree
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commitdiff
2015-10-27
Peter Amstutz
7593: Fixup to use keep: URI scheme globbing for outputs.
tree
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commitdiff
2015-10-27
Peter Amstutz
7593: References to files in keep must have keep: URI...
tree
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commitdiff
2015-10-26
Peter Amstutz
7593: Don't upload the same files more than once. ...
tree
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commitdiff
2015-10-26
Brett Smith
Merge branch 'pr/25'
tree
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commitdiff
2015-10-26
Peter Amstutz
7582: Passes draft-2 conformance tests.
tree
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commitdiff
2015-10-23
Peter Amstutz
7582: Fixup to work with latest cwltool. Runs jobs...
tree
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commitdiff
2015-10-20
Brett Smith
Merge branch 'pr/28'
tree
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commitdiff
2015-10-15
Tom Clegg
Merge branch 'master' into wtsi-hgi-feature/arv-view
tree
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commitdiff
2015-10-09
radhika
Merge branch '7167-keep-rsync-test-setup' into 7167...
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commitdiff
2015-10-09
radhika
Merge branch 'master' into 7167-keep-rsync-test-setup
tree
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commitdiff
2015-10-09
Peter Amstutz
Merge branch 'master' into 7491-go-keepclient-retry
tree
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commitdiff
2015-10-09
Tom Clegg
Merge branch '7491-keepclient-bugs' refs #7491
tree
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commitdiff
2015-10-09
Tom Clegg
Merge branch '7167-blob-sign-sdk' refs #7167
tree
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commitdiff
2015-10-09
Brett Smith
Version the CWL runner's dependency on cwltool.
tree
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commitdiff
2015-09-04
Joshua C. Randall
Merge pull request #2 from wtsi-hgi/feature/arv-view
tree
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commitdiff
2015-08-03
Brett Smith
Merge branch '6221-write-trash-list'
tree
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commitdiff
2015-07-31
Tom Clegg
Merge branch 'git-commit-debug' of https://github.com...
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commitdiff
2015-07-31
Tom Clegg
Merge branch 'crunch-dispatch-docker-bin-env' of https...
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commitdiff
2015-07-24
Peter Amstutz
Merge branch '6705-fix-websockets-replay' closes #6705
tree
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commitdiff
2015-07-22
Brett Smith
Add standard Python .gitignore for CWL SDK.
tree
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commitdiff
2015-07-22
Peter Amstutz
Merge branch '6264-cwl-runner' closes #6264
tree
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commitdiff
2015-07-21
Peter Amstutz
6264: Typo fix.
tree
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commitdiff
2015-07-21
Peter Amstutz
6264: Code cleanup: rename "i" in _match() to "filename...
tree
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commitdiff
2015-07-21
Peter Amstutz
6264: Use mutually exclusive group for enable/disable...
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commitdiff
2015-07-07
Peter Amstutz
6264: Fix bin/cwl-runner to import correct module.
tree
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commitdiff
2015-07-06
Peter Amstutz
6264: Move cwlrunner into its own module.
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commitdiff