raise UnsupportedRequirement("Check log for details.")
if self.final_output is None:
- raise cwltool.workflow.WorkflowException("Workflow did not return a result.")
+ raise WorkflowException("Workflow did not return a result.")
return self.final_output
import logging
+import sys
+
import cwltool.docker
+from cwltool.errors import WorkflowException
import arvados.commands.keepdocker
-import sys
+
logger = logging.getLogger('arvados.cwl-runner')
if image_tag:
args.append(image_tag)
logger.info("Uploading Docker image %s", ":".join(args[1:]))
- arvados.commands.keepdocker.main(args, stdout=sys.stderr)
+ try:
+ arvados.commands.keepdocker.main(args, stdout=sys.stderr)
+ except SystemExit:
+ raise WorkflowException()
images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3,
image_name=image_name,
+from cwltool.errors import WorkflowException
+
def done(self, record, tmpdir, outdir, keepdir):
colname = "Output %s of %s" % (record["output"][0:7], self.name)