13348: Don't submit child jobs/containers with submit=True.

Fixes infinite recursion.

see a82b39e1849a67854cb3399a4660b77548edd580

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index c2f43fe368b47c1c75447195feb2ed96d27b39d6..be093d74505edebbe0c430fcfc00b2e8bc28b559 100644 (file)
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -507,7 +507,9 @@ class ArvCwlRunner(object):
             logger.info("Pipeline instance %s", self.pipeline["uuid"])
 
         if runnerjob and not kwargs.get("wait"):
-            runnerjob.run(**kwargs)
+            submitargs = kwargs.copy()
+            submitargs['submit'] = False
+            runnerjob.run(**submitargs)
             return (runnerjob.uuid, "success")
 
         self.poll_api = arvados.api('v1')