Put in quickstart sections on docs homepage for both 1) public pipeline 2) pipeline developers
Revert changes made in #5090 (home title back to "Arvados Docs", topnav link to "arvados.org")
Refactor /user/index.html, removing references to /start and directing new users to homepage quickstart section
exclude: ["Rakefile", "tmp", "vendor"]
navbar:
- start:
- - Getting Started:
- - start/index.html.textile.liquid
- - Quickstart:
- - start/getting_started/publicproject.html.textile.liquid
- - start/getting_started/firstpipeline.html.textile.liquid
- - Common Use Cases:
- - start/getting_started/sharedata.html.textile.liquid
- - Next Steps:
- - start/getting_started/nextsteps.html.textile.liquid
+ #start:
+ #- Getting Started:
+ #- start/index.html.textile.liquid
+ #- Quickstart:
+ #- start/getting_started/publicproject.html.textile.liquid
+ #- start/getting_started/firstpipeline.html.textile.liquid
+ #- Common Use Cases:
+ #- start/getting_started/sharedata.html.textile.liquid
+ #- Next Steps:
+ #- start/getting_started/nextsteps.html.textile.liquid
userguide:
- Welcome:
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
- <a class="navbar-brand" href="{{ site.baseurl }}/">Arvados</a>
+ <a class="navbar-brand" href="{{ site.baseurl }}/">Arvados Docs</a>
</div>
<div class="collapse navbar-collapse" id="bs-navbar-collapse">
<ul class="nav navbar-nav">
- <li {% if page.navsection == 'start' %} class="active" {% endif %}><a href="{{ site.baseurl }}/start/index.html">Getting Started</a></li>
+ <!--<li {% if page.navsection == 'start' %} class="active" {% endif %}><a href="{{ site.baseurl }}/start/index.html">Getting Started</a></li>-->
<li {% if page.navsection == 'userguide' %} class="active" {% endif %}><a href="{{ site.baseurl }}/user/index.html">User Guide</a></li>
<li {% if page.navsection == 'sdk' %} class="active" {% endif %}><a href="{{ site.baseurl }}/sdk/index.html">SDKs</a></li>
<li {% if page.navsection == 'api' %} class="active" {% endif %}><a href="{{ site.baseurl }}/api/index.html">API</a></li>
<li {% if page.navsection == 'installguide' %} class="active" {% endif %}><a href="{{ site.baseurl }}/install/index.html">Install</a></li>
- <li><a href="https://arvados.org/projects/arvados/" style="padding-left: 2em">Developer Site »</a></li>
+ <li><a href="https://arvados.org/projects/arvados/" style="padding-left: 2em">arvados.org »</a></li>
</ul>
<div class="pull-right" style="padding-top: 6px">
<html>
<head>
<meta charset="utf-8">
- <title>{% unless page.title == "Arvados" %} Arvados | Documentation | {% endunless %}{{ page.title }}</title>
+ <title>{% unless page.title == "Arvados | Documentation" %} Arvados | Documentation | {% endunless %}{{ page.title }}</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
layout: default
no_nav_left: true
navsection: top
-title: Arvados
+title: Arvados | Documentation
...
<div class="jumbotron">
<div class="col-sm-5">
<p><a href="https://arvados.org/">Arvados</a> enables you to quickly begin using cloud computing resources in your data science work. It allows you to track your methods and datasets, share them securely, and easily re-run analyses.
</p>
- <p><strong>Quickstart</strong>: Check out our <a href="{{ site.baseurl }}/start/index.html">key features</a>, complete with screenshots, and then follow our tutorial to <a href="{{ site.baseurl }}/start/getting_started/firstpipeline.html">run your first pipeline</a> using our <a href="http://lp.curoverse.com/beta-signup/">public beta</a>.
- </p>
<p><strong>News</strong>: Read our <a href="https://arvados.org/projects/arvados/blogs">blog updates</a> or look through our <a href="https://arvados.org/projects/arvados/activity">recent developer activity</a>.
</p>
<p><strong>Questions?</strong> Email <a href="http://lists.arvados.org/mailman/listinfo/arvados">the mailing list</a>, or chat with us on IRC: <a href="irc://irc.oftc.net:6667/#arvados">#arvados</a> @ OFTC (you can <a href="https://webchat.oftc.net/?channels=arvados">join in your browser</a>).
</div>
<div class="col-sm-7" style="border-left: solid; border-width: 1px">
- <p>Below you can also find more in-depth guides for using Arvados.
- </p>
- <br>
+ <p><strong>Quickstart</strong>
+ <p>
+ Run any pipeline from the <a href="https://arvados.org/projects/arvados/wiki/Public_Pipelines_and_Datasets">list of public pipelines</a> using Curoverse's <a href="http://lp.curoverse.com/beta-signup/">public Arvados instance</a>.
+ For instance, try the <a href="http://curover.se/pathomap">Pathomap Pipeline</a>.
+ <!--<p>-->
+ <!--<ol>-->
+ <!--<li>-->
+ <!--Go to <a href="https://{{ site.arvados_workbench_host }}/" target="_blank">https://{{ site.arvados_workbench_host }}/</a>-->
+ <!--</li><li>-->
+ <!--Register with any Google account-->
+ <!--</li><li>-->
+ <!--Follow the Getting Started guide-->
+ <!--<br>-->
+ <!--<em>Tip: Don't see the guide? You can find it by clicking (in the upper-right corner) <span class="fa fa-lg fa-question-circle"></span> > Getting Started)</em>-->
+ <!--</li>-->
+ <!--</ol>-->
+ <!--</p>-->
+ <p><strong>
+ Pipeline Developer Quickstart
+ </strong></p>
<p>
- <a href="{{ site.baseurl }}/start/index.html">Getting Started</a> — Start here if you're new to Arvados.
+ Want to port your pipeline to Arvados? Check out the step-by-step <a href="https://arvados.org/projects/arvados/wiki/Port_a_Pipeline">Port-a-Pipeline</a> guide on the Arvados wiki.
</p>
+ <p><strong>Below you can also find more in-depth guides for using Arvados.
+ </strong></p>
+ <!--<p>-->
+ <!--<a href="{{ site.baseurl }}/start/index.html">Getting Started</a> — Start here if you're new to Arvados.-->
+ <!--</p>-->
<p>
<a href="{{ site.baseurl }}/user/index.html">User Guide</a> — How to manage data and do analysis with Arvados.
</p>
title: Welcome to Arvados!
...
-_If you are new to Arvados, please read the "Getting Started":{{site.baseurl}}/start/index.html guide for a quick introduction to working with Arvados._
+_If you are new to Arvados, please try the Quickstart on <a href="http://{{ site.baseurl }}">the documentation homepage</a> instead of this detailed User Guide._
This guide provides a reference for using Arvados to solve big data bioinformatics problems, including:
* Storing and querying metadata about genome sequence files, such as human subjects and their phenotypic traits using the "Arvados Metadata Database.":{{site.baseurl}}/user/topics/tutorial-trait-search.html
* Accessing, organizing, and sharing data, pipelines and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application.
-This User Guide goes into more depth than the "Getting Started guide":{{site.baseurl}}/start/index.html, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order.
-
The examples in this guide use the Arvados instance located at <a href="https://{{ site.arvados_workbench_host }}/" target="_blank">https://{{ site.arvados_workbench_host }}</a>. If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide.
Curoverse maintains a public Arvados instance located at <a href="https://workbench.qr1hi.arvadosapi.com/" target="_blank">https://workbench.qr1hi.arvadosapi.com/</a>. You must have an account in order to use this service. If you would like to request an account, please send an email to "arvados@curoverse.com":mailto:arvados@curoverse.com.
projects / arvados.git / commitdiff