10604: rename tutorial-pipeline-workbench.html as tutorial-workbench-workbench.html

diff --git a/doc/_config.yml b/doc/_config.yml
index fdd57c5acb0ca60d40ea8ea7b2e079fe11a15b68..30df754b7af8394e0472c241aebd59abf37bcbb2 100644 (file)
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -30,7 +30,7 @@ navbar:
       - user/getting_started/community.html.textile.liquid
     - Run a workflow using Workbench:
       - user/getting_started/workbench.html.textile.liquid
-      - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+      - user/tutorials/tutorial-workflow-workbench.html.textile.liquid
     - Access an Arvados virtual machine:
       - user/getting_started/vm-login-with-webshell.html.textile.liquid
       - user/getting_started/ssh-access-unix.html.textile.liquid

diff --git a/doc/_includes/_arvados_cwl_runner.liquid b/doc/_includes/_arvados_cwl_runner.liquid
index 72c95ddda18b6b0497a793b200ecf0c573aee9a1..9a10bab5eaf56be8aa4be541ebc2201359aa0de0 100644 (file)
--- a/doc/_includes/_arvados_cwl_runner.liquid
+++ b/doc/_includes/_arvados_cwl_runner.liquid
@@ -26,7 +26,7 @@ arvados-cwl-runner 1.0.20160628195002, arvados-python-client 0.1.20160616015107,
 
 h3. Submit a workflow with no waiting
 
-To submit a workflow and exit immediately, use the @--no-wait@ option.  This will submit the workflow to Arvados, print out the uuid of the job that was submitted to standard output, and exit.
+To submit a workflow and exit immediately, use the @--no-wait@ option.  This will submit the workflow to Arvados, print out the UUID of the job that was submitted to standard output, and exit.
 
 <notextile>
 <pre><code>~/arvados/doc/user/cwl/bwa-mem$ <span class="userinput">arvados-cwl-runner --no-wait bwa-mem.cwl bwa-mem-input.yml</span>

diff --git a/doc/user/cwl/cwl-runner.html.textile.liquid b/doc/user/cwl/cwl-runner.html.textile.liquid
index fc0c6b0fd6c475e13157466d3051a474e7b5241d..ecff47f059e8cc9c7a6ff03aaef7e605d2ba45fc 100644 (file)
--- a/doc/user/cwl/cwl-runner.html.textile.liquid
+++ b/doc/user/cwl/cwl-runner.html.textile.liquid
@@ -8,7 +8,7 @@ title: Using Common Workflow Language
 
 {% include 'tutorial_expectations' %}
 
-h2. Preparing to work with Arvados cwl runner
+h2. Preparing to work with Arvados CWL runner
 
 h3. arvados-cwl-runner
 

diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-workflow-workbench.html.textile.liquid
similarity index 98%
rename from doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
rename to doc/user/tutorials/tutorial-workflow-workbench.html.textile.liquid
index 11746bf732ea4f210fc075e917789742897f8a48..445ce751e9d329930e4adc285bf969a680ff8f2f 100644 (file)
--- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-workflow-workbench.html.textile.liquid
@@ -17,7 +17,7 @@ h3. Steps
 # Start from the *Workbench Dashboard*.  You can access the Dashboard by clicking on *<i class="fa fa-lg fa-fw fa-dashboard"></i> Dashboard* in the upper left corner of any Workbench page.
 # Click on the <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a process...</span> button.  This will open a dialog box titled *Choose a pipeline or workflow to run*.
 # In the search box, type in *Tutorial bwa mem cwl*.
-# Select *<i class="fa fa-fw fa-gear"></i> Tutorial bwa mem cwl* and click the <span class="btn btn-sm btn-primary" >Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span> button.  This will create a new process in your *Home* project and will open it. You can now supply the inputs for the process. Please note that all required inputs are pupulated with default values and you can change them if you prefer.
+# Select *<i class="fa fa-fw fa-gear"></i> Tutorial bwa mem cwl* and click the <span class="btn btn-sm btn-primary" >Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span> button.  This will create a new process in your *Home* project and will open it. You can now supply the inputs for the process. Please note that all required inputs are populated with default values and you can change them if you prefer.
 # For example, let's see how to change *"reference" parameter* for this workflow. Click the <span class="btn btn-sm btn-primary">Choose</span> button beneath the *"reference" parameter* header.  This will open a dialog box titled *Choose a dataset for "reference" parameter for cwl-runner in bwa-mem.cwl component*.
 # Open the *Home <span class="caret"></span>* menu and select *All Projects*. Search for and select *<i class="fa fa-fw fa-archive"></i> Tutorial chromosome 19 reference*. You will then see a list of files. Select *<i class="fa fa-fw fa-file"></i> 19-fasta.bwt* and click the <span class="btn btn-sm btn-primary" >OK</span> button.
 # Repeat the previous two steps to set the *"read_p1" parameter for cwl-runner script in bwa-mem.cwl component* and *"read_p2" parameter for cwl-runner script in bwa-mem.cwl component* parameters.